genome.fa.s9.2.7.7.80.10.50.1000.225.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  225  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69342864--69342888	6	4.2	6	100	0	50	48	0	0	52	1.00
69358240--69358278	16	2.5	16	83	4	53	20	5	7	66	1.36
69358326--69358350	13	1.9	13	100	0	50	56	0	0	44	0.99
69358473--69358544	30	2.4	30	97	0	135	58	12	12	16	1.63
69360915--69360946	12	2.7	12	95	0	55	50	6	9	34	1.60
69362123--69362236	47	2.3	49	72	17	119	18	22	23	35	1.96
69362260--69362424	50	3.3	50	77	4	147	23	30	16	29	1.96
69365461--69365637	50	3.5	50	86	3	248	35	16	22	25	1.94
69365615--69365698	42	2.0	42	97	0	159	28	14	29	27	1.95
69365657--69365764	31	3.5	31	96	0	189	27	19	27	25	1.99
69366419--69366650	46	5.0	46	88	2	297	23	24	14	38	1.91
69369261--69369363	46	2.2	46	79	6	109	27	14	26	32	1.95
69369337--69369449	42	2.7	43	86	4	149	31	12	26	29	1.93
69371484--69371527	21	2.1	21	95	0	79	52	18	25	4	1.64
69389711--69389778	10	7.2	9	73	15	57	36	0	1	61	1.05
69389708--69389807	39	2.6	37	79	14	103	37	0	2	61	1.08
69389711--69389803	49	1.9	49	83	14	122	35	0	2	62	1.07
69394965--69395011	25	1.9	24	82	4	58	25	4	4	65	1.29
69413353--69413403	3	17.3	3	77	18	54	66	0	33	0	0.92
69413354--69413403	20	2.5	20	93	6	84	68	0	32	0	0.90
69413907--69413949	17	2.6	16	89	7	68	76	2	6	13	1.08
69413986--69414395	137	3.1	136	89	3	602	57	6	7	28	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69414786--69414843	16	3.6	16	74	6	55	48	1	0	50	1.11
69414784--69414880	38	2.5	38	78	8	108	43	1	4	51	1.27
69421792--69421824	17	1.9	17	100	0	66	18	9	0	72	1.10
69422266--69422349	38	2.2	36	78	12	87	3	35	5	54	1.42
69422345--69422411	3	23.0	3	74	17	61	0	34	0	65	0.93
69422493--69422587	27	3.5	28	78	9	81	10	40	29	20	1.85
69422589--69422626	20	2.0	20	94	5	69	5	13	10	71	1.30
69422755--69423325	238	2.4	238	83	2	734	28	15	23	32	1.95
69423158--69423534	209	1.8	208	85	5	537	27	14	24	32	1.95
69431718--69431772	25	2.2	24	78	9	56	56	9	20	14	1.65
69432195--69432250	23	2.4	23	81	0	58	37	26	25	10	1.88
69434931--69434969	19	2.0	20	90	5	62	20	0	7	71	1.10
69434950--69434995	25	1.9	23	86	8	65	28	0	8	63	1.24
69438157--69438216	3	20.3	3	72	3	50	28	3	5	63	1.31
69438278--69438429	26	5.7	26	67	17	71	26	7	5	61	1.44
69438389--69438451	3	20.3	3	82	6	72	30	3	0	66	1.07
69438387--69438451	34	1.9	34	93	0	112	29	3	0	67	1.05
69441158--69441196	20	1.9	21	85	15	55	43	7	10	38	1.67
69443049--69443146	49	2.0	49	100	0	196	14	44	12	28	1.81
69453579--69453603	6	4.2	6	100	0	50	16	16	52	16	1.76
69461328--69461416	43	2.1	43	97	0	169	33	3	14	48	1.61
69462639--69462682	22	2.0	22	90	0	70	63	0	4	31	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69462728--69462792	31	2.2	31	83	5	80	30	30	4	33	1.78
69473504--69473528	13	1.9	13	100	0	50	48	0	0	52	1.00
69473560--69473601	13	2.9	14	80	13	50	54	0	0	45	0.99
69473564--69473600	16	2.3	16	86	13	58	59	0	0	40	0.97
69473634--69473690	15	3.5	15	71	17	51	50	0	1	47	1.11
69477054--69477126	20	3.4	22	80	16	66	39	0	6	53	1.28
69478898--69478946	24	2.0	24	100	0	98	28	34	12	24	1.91
69480087--69480126	20	2.0	20	95	0	71	20	32	20	27	1.97
69480374--69480514	3	47.0	3	73	13	87	65	0	3	29	1.14
69480870--69480950	30	2.7	30	86	5	112	23	2	44	29	1.66
69483422--69483491	34	2.0	35	86	2	97	35	10	0	54	1.34
69490548--69490673	3	42.3	3	72	15	84	29	3	1	65	1.20
69490769--69490808	14	2.7	16	77	18	50	25	10	10	55	1.64
69490901--69490940	20	2.0	20	95	0	71	27	20	32	20	1.97
69492812--69493017	79	2.6	78	85	2	277	33	22	13	31	1.93
69492993--69493130	40	3.5	40	81	0	141	34	19	13	31	1.91
69505129--69505190	28	2.2	29	82	2	72	41	0	1	56	1.09
69506524--69506563	21	2.0	20	85	14	55	35	5	5	55	1.44
69514750--69514786	19	1.9	20	88	5	58	48	0	0	51	1.00
69517291--69517343	24	2.2	24	100	0	106	15	15	13	56	1.67
69520794--69520821	5	5.6	5	100	0	56	39	0	0	60	0.97
69521374--69521484	38	2.8	40	75	8	111	23	20	26	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69521374--69521508	39	3.4	39	71	11	98	24	20	26	28	1.99
69527552--69527584	5	6.6	5	100	0	66	39	0	0	60	0.97
69527624--69527684	30	2.0	30	81	9	70	59	6	34	0	1.24
69528138--69528247	38	2.8	40	75	8	109	23	20	25	30	1.99
69538054--69538120	33	2.0	33	100	0	134	26	2	32	37	1.72
69542618--69542657	21	1.9	21	100	0	80	45	32	10	12	1.75
69549080--69549109	6	5.0	6	100	0	60	16	0	0	83	0.65
69549793--69549851	31	1.9	31	89	0	91	47	6	6	38	1.57
69551491--69551533	21	2.0	21	100	0	86	18	18	18	44	1.87
69555775--69555822	15	3.4	14	83	13	55	31	0	4	64	1.12
69556046--69556105	21	2.9	21	84	0	75	35	31	6	26	1.82
69558125--69558373	50	4.8	50	85	4	284	20	29	24	26	1.99
69558124--69558373	100	2.4	104	88	6	357	20	29	24	26	1.99
69558468--69558499	13	2.5	13	94	0	55	56	12	0	31	1.37
69558711--69558768	30	1.9	30	89	0	89	31	24	3	41	1.71
69626760--69627335	44	13.2	45	79	6	571	27	16	25	30	1.97
69626755--69627168	132	3.1	132	96	0	765	27	15	25	30	1.96
69626755--69627330	132	4.4	132	90	2	756	27	16	25	30	1.96
69627061--69627315	81	3.0	82	76	10	230	26	16	25	30	1.97
69626917--69627335	170	2.4	173	90	3	641	27	16	26	30	1.97
69628907--69628957	3	17.3	3	75	4	50	33	1	3	60	1.26
69629079--69629114	3	12.0	3	100	0	72	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69630907--69630948	21	2.0	20	82	13	50	21	35	0	42	1.53
69632818--69632860	17	2.5	17	78	14	52	39	6	4	48	1.51
69642789--69642867	37	2.1	37	100	0	158	30	18	10	40	1.84
69650104--69650144	21	2.0	21	95	0	73	39	24	17	19	1.92
69655160--69655231	30	2.4	31	83	2	83	51	6	8	33	1.59
69657227--69657264	19	2.0	20	84	5	51	60	2	0	36	1.11
69665186--69665215	15	1.9	15	93	6	51	66	0	0	33	0.92
69665412--69665439	6	4.7	6	100	0	56	53	0	0	46	1.00
69671654--69671704	22	2.3	22	86	10	68	54	0	0	45	0.99
69671681--69671720	18	2.2	18	86	0	53	62	0	0	37	0.95
69672056--69672081	11	2.4	11	100	0	52	7	30	7	53	1.57
69679619--69679684	31	2.1	31	81	15	75	45	1	1	51	1.19
69679804--69679876	30	2.4	30	83	0	101	35	2	4	57	1.32
69691617--69691767	53	2.8	53	88	4	205	29	28	16	25	1.97
69694438--69694476	20	1.9	21	89	5	62	46	12	5	35	1.65
69694440--69694500	32	1.9	32	86	0	86	44	13	8	34	1.73
69694645--69694693	20	2.5	20	79	0	53	38	12	6	42	1.67
69694760--69694955	20	9.9	20	71	7	114	40	15	7	36	1.75
69694767--69694861	38	2.4	38	81	10	95	40	14	7	37	1.74
69694839--69694870	10	3.1	11	82	17	50	50	12	0	37	1.41
69694809--69694992	80	2.3	79	77	7	185	40	16	4	38	1.70
69695131--69695209	20	4.0	20	71	12	63	50	8	3	36	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69701443--69701481	20	2.0	20	84	0	51	15	25	33	25	1.95
69702309--69702443	52	2.6	52	84	3	155	30	25	17	26	1.97
69720841--69720912	29	2.4	29	88	6	101	48	0	0	51	1.00
69727704--69727817	42	2.7	41	90	2	165	28	26	14	30	1.95
69727788--69727911	47	2.7	46	85	5	160	29	26	16	28	1.97
69727934--69728114	31	5.8	31	93	0	281	23	28	19	28	1.98
69728095--69728217	50	2.4	51	90	5	196	26	22	15	35	1.94
69733336--69733393	30	1.9	30	89	0	89	24	22	20	32	1.98
69733472--69733566	43	2.2	45	81	11	108	29	23	13	33	1.93
69733913--69734009	44	2.2	45	80	14	112	29	23	15	30	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250