genome.fa.s9.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  132  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42674313--42674707	100	4.1	100	81	9	433	25	16	18	39	1.91
42674614--42675067	73	6.2	72	83	5	520	30	14	20	35	1.92
42675146--42675178	14	2.4	14	94	0	57	18	12	6	63	1.48
42675000--42675334	182	1.9	180	83	6	444	28	17	19	34	1.95
42674980--42675534	91	6.0	91	75	11	395	27	16	17	38	1.91
42675246--42675436	102	1.8	103	87	5	287	28	15	16	38	1.90
42675374--42675602	87	2.6	88	80	4	230	31	15	18	34	1.93
42676216--42676314	30	3.3	30	92	0	171	26	49	6	18	1.70
42676833--42676910	23	3.3	25	77	10	74	35	7	5	51	1.53
42676935--42677000	22	2.9	23	82	6	80	30	6	6	57	1.47
42676940--42677001	24	2.7	23	85	5	81	30	4	6	58	1.44
42676864--42677036	78	2.2	79	80	10	192	31	7	4	56	1.48
42677063--42677118	25	2.3	24	79	14	62	37	16	3	42	1.65
42682469--42682527	30	1.9	31	90	10	95	42	23	13	20	1.88
42683011--42683035	5	5.0	5	100	0	50	20	0	0	80	0.72
42683003--42683098	19	5.3	18	74	13	72	28	2	1	68	1.07
42683043--42683089	20	2.3	20	82	17	62	29	2	0	68	1.02
42683003--42683107	21	5.1	19	66	27	54	27	1	0	69	1.05
42683119--42683159	13	3.1	13	82	6	55	60	7	0	31	1.24
42688830--42688881	15	3.3	15	80	15	61	19	26	0	53	1.45
42688830--42688869	16	2.5	15	84	11	53	20	27	0	52	1.46
42693740--42693854	44	2.6	44	85	2	149	35	13	22	27	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42693740--42693873	46	3.0	45	82	4	153	35	14	23	26	1.93
42701068--42701182	44	2.6	44	85	2	149	35	13	22	27	1.92
42701068--42701201	46	3.0	45	82	4	153	35	14	23	26	1.93
42703134--42703191	15	3.8	15	88	2	89	51	12	0	36	1.39
42704446--42704487	5	8.2	5	97	2	75	57	0	0	42	0.99
42704510--42704538	8	3.6	8	100	0	58	62	0	0	37	0.96
42711722--42711871	75	2.0	75	89	0	228	36	12	12	39	1.80
42715438--42715696	131	2.0	130	88	0	383	28	18	17	35	1.94
42719127--42719179	21	2.6	20	77	16	56	35	1	13	49	1.53
42719143--42719180	20	1.9	20	89	10	60	34	0	15	50	1.45
42719438--42719498	31	2.0	31	90	0	95	54	4	13	27	1.59
42732490--42732557	14	4.6	14	70	20	57	4	11	11	72	1.27
42732491--42732578	15	5.8	15	73	11	54	6	10	11	71	1.30
42732489--42732582	46	2.0	46	100	0	188	6	10	10	72	1.28
42734602--42734972	187	2.0	182	95	2	661	28	17	15	38	1.91
42736141--42736190	20	2.4	22	86	6	68	74	0	2	24	0.93
42736160--42736189	16	1.9	15	93	6	51	73	0	0	26	0.84
42736141--42736202	20	3.0	20	79	9	54	70	1	4	22	1.14
42741555--42741587	17	1.9	17	93	0	57	30	0	3	66	1.06
42742686--42742756	34	2.1	34	94	0	124	30	23	4	40	1.74
42742883--42742925	18	2.2	20	84	8	54	44	16	9	30	1.79
42745179--42745297	35	3.4	34	68	13	96	45	14	12	27	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42748753--42748853	50	2.0	50	98	0	193	29	25	18	25	1.98
42748826--42749138	47	6.7	47	72	12	211	21	30	20	27	1.98
42748826--42749138	94	3.4	93	77	9	336	21	30	20	27	1.98
42755514--42755636	43	2.9	43	87	6	169	33	26	15	25	1.95
42761932--42762190	46	5.6	46	90	0	358	20	23	13	42	1.88
42764910--42765133	70	3.2	70	85	1	270	32	11	18	38	1.86
42768303--42768437	43	3.2	43	84	7	168	18	12	23	45	1.84
42769856--42769894	20	2.0	20	100	0	78	15	28	10	46	1.78
42775760--42775943	40	4.6	40	84	2	244	24	25	23	26	2.00
42779291--42779362	25	2.8	26	75	21	80	22	4	4	69	1.23
42779542--42779566	3	8.3	3	100	0	50	32	0	0	68	0.90
42781673--42781802	42	3.1	42	93	0	215	30	21	22	25	1.99
42783937--42783984	6	8.3	6	88	2	64	16	0	4	79	0.89
42786456--42786579	62	2.0	62	93	1	212	35	9	20	34	1.85
42788834--42788924	42	2.2	40	90	5	139	27	14	25	32	1.94
42789270--42789307	15	2.5	15	91	0	58	21	2	34	42	1.67
42789341--42789426	7	11.4	7	74	14	73	24	0	41	33	1.55
42789341--42789438	15	6.4	15	80	9	76	24	0	39	35	1.56
42789344--42789403	22	2.6	22	92	5	93	23	0	38	38	1.55
42789339--42789429	8	11.9	8	70	11	66	24	0	41	34	1.55
42789395--42789443	24	2.1	23	88	3	71	24	0	44	30	1.54
42789339--42789437	7	12.8	8	74	12	64	24	0	40	35	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42789458--42789503	22	2.1	22	84	8	58	28	0	17	54	1.43
42789723--42789816	26	3.6	26	89	2	145	44	6	4	44	1.49
42792124--42792193	34	2.1	34	81	10	81	27	2	1	68	1.12
42792770--42792907	67	2.1	67	98	0	267	39	20	17	22	1.92
42793757--42793811	15	3.7	15	75	22	62	45	0	0	54	0.99
42793755--42793820	29	2.3	29	92	5	107	43	0	0	56	0.99
42793734--42793793	20	3.0	20	70	4	59	40	0	3	56	1.16
42794092--42794160	9	7.7	9	90	0	102	44	23	1	30	1.62
42799202--42799230	14	2.1	14	93	6	51	34	0	10	55	1.34
42799644--42799714	21	3.4	21	84	0	97	30	15	47	5	1.68
42800114--42800476	43	8.5	43	88	0	476	26	30	15	26	1.96
42800114--42800481	129	2.9	129	90	0	540	26	29	16	26	1.97
42801634--42801660	11	2.5	11	100	0	54	51	0	7	40	1.30
42803972--42804008	18	2.1	18	100	0	74	43	5	16	35	1.71
42806742--42806777	16	2.2	17	95	5	65	38	11	0	50	1.38
42808144--42808205	28	2.2	28	85	0	79	33	17	16	32	1.92
42808144--42808278	14	9.6	14	65	3	56	36	17	15	30	1.91
42808364--42808448	28	3.0	28	87	3	118	31	21	17	29	1.96
42811949--42811984	17	2.1	18	89	5	56	47	5	5	41	1.50
42814766--42814922	43	3.7	42	74	8	140	26	17	28	28	1.97
42815319--42816619	645	2.0	648	96	0	2419	28	8	21	41	1.83
42845157--42845257	43	2.3	43	86	3	141	28	15	21	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42847391--42847482	45	2.0	45	95	0	166	42	17	10	29	1.83
42850813--42850979	50	3.4	49	73	8	167	34	19	22	23	1.97
42850768--42850894	25	5.2	24	75	9	105	33	20	22	23	1.97
42850768--42850980	99	2.2	99	86	0	291	34	19	21	24	1.96
42855131--42855495	41	8.9	40	85	5	423	35	24	20	19	1.96
42855131--42855495	81	4.5	82	85	3	434	35	24	20	19	1.96
42855195--42855495	122	2.5	122	89	3	453	35	25	20	18	1.96
42855675--42855750	36	2.0	39	85	7	104	30	5	23	40	1.77
42855909--42855960	25	2.1	25	100	0	104	28	7	23	40	1.82
42856320--42856353	17	2.0	17	94	0	59	55	0	8	35	1.31
42856331--42856388	22	2.6	21	76	10	62	55	0	5	39	1.22
42858550--42858596	23	2.0	23	95	0	85	21	19	10	48	1.78
42860568--42861814	468	2.7	466	98	0	2401	36	11	11	41	1.77
42867608--42867655	21	2.3	21	96	0	87	22	16	58	2	1.49
42867954--42868328	43	8.7	43	87	1	484	24	20	24	30	1.99
42869738--42869859	55	2.2	55	92	1	201	20	22	30	26	1.98
42878819--42878860	13	3.1	13	86	10	57	71	2	21	4	1.16
42880338--42880513	46	3.8	46	78	10	196	21	21	28	28	1.98
42880335--42880506	93	1.8	93	92	0	290	21	21	29	27	1.99
42883437--42883486	15	3.4	15	86	2	66	10	18	12	60	1.59
42885870--42886039	47	3.8	45	78	12	179	21	20	29	28	1.98
42895868--42895943	34	2.2	36	81	9	95	55	1	2	40	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42903733--42904016	142	2.0	142	97	0	541	25	14	19	40	1.89
42906530--42906562	12	2.8	12	90	4	50	24	3	6	66	1.28
42914565--42914649	41	2.1	41	91	4	136	36	8	11	43	1.71
42915066--42915143	40	1.9	41	82	7	97	38	10	11	39	1.76
42914441--42916203	498	3.6	494	84	5	2132	38	12	11	37	1.80
42918022--42918093	28	2.7	26	82	6	74	29	16	22	31	1.96
42918039--42918093	26	2.1	27	83	10	69	32	18	20	29	1.96
42918078--42918137	23	2.6	24	84	7	72	31	15	16	36	1.90
42918174--42918220	22	2.1	22	84	0	58	21	23	25	29	1.99
42918485--42918535	18	2.9	17	75	18	59	31	17	17	33	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250