genome.fa.s9.2.7.7.80.10.50.1000.145.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  145  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46994699--46994891	68	2.9	68	86	4	261	27	21	22	28	1.99
46994912--46995850	87	10.8	86	70	12	438	21	22	20	35	1.96
46994995--46995857	258	3.3	260	90	3	1258	20	22	21	35	1.96
46994912--46995846	43	21.6	43	73	10	534	21	22	20	35	1.96
46995910--46996036	66	1.9	66	95	0	227	35	11	19	33	1.87
46999957--47000003	19	2.5	20	89	6	71	42	8	21	27	1.81
47002533--47002583	10	4.9	10	77	15	50	56	3	0	39	1.18
47002536--47002585	26	1.9	26	88	8	75	58	4	0	38	1.17
47002787--47002864	3	26.3	3	70	23	51	65	1	3	29	1.18
47002785--47002861	12	6.5	12	76	7	77	64	1	3	29	1.19
47003193--47003289	21	4.5	22	78	14	94	59	31	1	7	1.31
47003189--47003271	22	3.7	22	78	9	87	60	30	1	8	1.34
47003200--47003610	205	2.0	207	98	0	790	37	20	22	19	1.94
47003421--47003467	23	2.2	23	88	11	73	55	31	2	10	1.46
47007251--47007304	20	2.7	20	75	11	56	57	16	18	7	1.62
47007274--47007331	30	1.9	30	82	0	71	53	18	20	6	1.67
47008769--47008810	20	2.1	20	86	8	59	57	21	19	2	1.52
47006587--47011912	733	7.2	733	82	4	6109	40	17	16	25	1.90
47009455--47009533	20	4.0	20	66	9	54	54	15	20	10	1.69
47009491--47009520	10	3.0	10	95	0	51	66	20	10	3	1.35
47022930--47023052	48	2.6	48	85	1	158	31	13	22	31	1.93
47022932--47023143	47	4.7	47	76	13	210	31	12	23	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47023027--47023188	38	4.0	38	74	16	155	30	12	25	32	1.92
47022975--47023181	85	2.4	85	93	0	369	29	13	25	31	1.93
47025582--47025772	62	3.1	61	83	1	193	26	26	21	25	2.00
47025617--47025780	61	2.7	62	86	5	226	28	24	21	25	1.99
47028409--47028462	24	2.3	24	84	6	67	42	0	0	57	0.98
47028934--47028963	15	2.0	15	93	0	51	36	0	0	63	0.95
47029212--47029262	26	2.0	26	88	7	77	35	3	5	54	1.43
47035265--47035338	33	2.3	33	86	6	98	22	24	14	37	1.92
47040444--47040591	51	2.9	50	87	4	215	28	25	14	32	1.94
47040627--47040726	24	4.0	24	76	14	103	25	23	13	39	1.90
47046737--47047264	47	11.4	47	92	3	838	31	9	30	29	1.88
47047383--47047461	37	2.1	37	88	4	115	25	18	30	25	1.98
47054036--47054203	46	3.7	44	78	11	180	30	29	19	20	1.97
47054044--47054214	92	1.8	93	91	6	285	28	29	20	21	1.98
47057314--47057483	46	3.8	45	76	18	176	28	28	21	21	1.98
47059853--47059901	14	3.4	15	80	8	57	59	12	18	10	1.60
47062811--47062982	45	3.8	45	78	7	197	28	28	21	21	1.99
47062819--47062985	90	1.8	91	89	6	268	27	28	22	21	1.99
47067327--47067443	42	2.7	43	78	8	123	24	17	25	32	1.96
47068219--47068294	34	2.2	34	83	4	100	25	19	26	28	1.99
47073487--47073541	25	2.2	24	96	3	101	32	10	20	36	1.87
47079952--47080150	51	3.9	51	91	3	303	29	24	13	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47091133--47091158	13	2.0	13	100	0	52	15	15	38	30	1.88
47102701--47102727	9	3.0	9	100	0	54	11	33	0	55	1.35
47107310--47107455	43	3.4	43	85	1	186	28	15	22	32	1.95
47110035--47110086	26	2.0	26	100	0	104	19	3	23	53	1.61
47112799--47112904	53	2.0	53	83	7	135	46	22	3	27	1.69
47113362--47113433	36	2.0	36	94	0	126	40	4	20	34	1.72
47115309--47115409	29	3.5	29	89	1	150	26	14	28	29	1.95
47121259--47121298	16	2.5	16	100	0	80	30	5	12	52	1.60
47127186--47127335	6	24.3	6	67	15	65	46	13	18	22	1.83
47127186--47127335	19	8.1	18	67	15	65	46	13	18	22	1.83
47127186--47127276	25	3.7	25	79	7	96	45	13	19	21	1.85
47127238--47127335	31	3.2	31	88	0	142	46	13	17	22	1.82
47127467--47127540	27	2.8	27	87	2	105	37	21	22	17	1.94
47128160--47128330	27	6.3	27	86	2	236	24	22	19	33	1.97
47128315--47128386	27	2.7	26	79	12	83	26	4	26	43	1.73
47128369--47128572	27	7.5	26	79	7	183	29	9	21	39	1.85
47128350--47128566	81	2.7	81	81	3	222	29	8	21	40	1.83
47128369--47128568	54	3.7	53	84	5	213	29	9	21	39	1.85
47128422--47128572	81	1.9	81	87	2	223	31	8	20	39	1.83
47130550--47130592	20	2.2	20	91	8	70	67	4	6	20	1.33
47160671--47160836	46	3.6	45	76	8	165	28	29	20	21	1.98
47160676--47160845	93	1.8	92	88	1	259	27	29	21	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47168200--47168308	28	3.9	28	80	7	114	25	30	17	26	1.97
47168524--47168566	16	2.7	16	89	7	61	6	23	18	51	1.70
47169803--47169836	16	2.1	17	94	5	61	11	2	38	47	1.55
47175963--47176070	28	3.9	27	86	7	112	25	31	16	26	1.97
47176297--47176334	16	2.4	16	86	8	51	18	18	18	44	1.87
47177564--47177595	16	2.0	16	100	0	64	6	6	37	50	1.53
47183981--47184007	14	1.9	14	100	0	54	29	11	14	44	1.80
47187860--47187911	26	2.0	26	96	0	95	13	23	34	28	1.92
47187782--47188253	103	4.6	104	94	2	778	20	19	29	30	1.97
47187962--47188013	26	2.0	26	92	0	86	13	21	34	30	1.92
47198612--47198770	43	3.7	43	70	10	119	25	17	24	32	1.97
47205708--47205786	25	3.3	25	61	10	65	32	5	29	32	1.79
47205578--47206320	47	15.5	47	93	3	1229	32	8	29	29	1.87
47206439--47206517	37	2.1	37	88	0	113	24	17	31	26	1.97
47210316--47210466	44	3.5	44	82	3	164	24	19	25	30	1.98
47217306--47217830	262	2.0	262	97	0	996	38	16	15	30	1.89
47218380--47218466	22	4.0	22	78	3	86	34	21	25	18	1.96
47220358--47220403	24	1.9	24	81	0	56	17	36	4	41	1.69
47222239--47222305	30	2.2	29	89	5	89	35	20	22	20	1.96
47222239--47222313	32	2.4	31	88	4	107	37	20	22	20	1.94
47222371--47222496	43	2.9	43	89	0	180	24	30	21	23	1.99
47222779--47222865	27	3.2	28	80	6	74	32	12	16	39	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47222799--47222902	52	2.0	54	90	3	167	31	10	20	37	1.86
47230911--47231074	23	6.9	22	71	14	80	31	17	23	27	1.97
47235560--47235739	48	3.7	48	88	0	270	22	17	33	27	1.96
47238205--47238396	50	3.9	49	81	9	221	30	27	17	23	1.97
47249630--47249807	48	3.7	48	90	2	257	24	16	32	26	1.96
47253570--47253691	42	2.8	42	76	13	113	32	24	16	26	1.96
47254831--47254855	13	1.9	13	100	0	50	40	24	4	32	1.73
47257148--47257278	64	2.0	64	100	0	262	34	27	12	25	1.92
47267113--47267178	26	2.5	26	82	2	78	36	37	15	10	1.82
47270637--47270771	51	2.7	51	97	1	254	41	15	9	33	1.80
47272762--47272790	15	1.9	15	100	0	58	6	24	6	62	1.45
47280423--47280513	42	2.2	41	78	9	94	32	15	23	28	1.95
47281446--47281491	24	1.9	24	95	0	83	28	2	26	43	1.66
47293744--47293798	16	3.5	15	73	26	51	18	23	0	58	1.39
47299089--47299126	20	1.9	20	94	0	67	42	23	28	5	1.76
47303139--47303176	6	6.0	6	93	6	58	63	34	0	2	1.09
47303988--47304191	102	2.0	101	95	0	363	37	11	6	43	1.68
47311031--47311089	29	2.0	29	93	0	100	23	23	11	40	1.88
47312379--47312641	145	1.8	145	85	3	377	41	9	8	40	1.68
47314013--47314190	27	6.6	27	84	3	205	29	28	15	26	1.96
47314034--47314189	82	1.9	81	88	3	233	29	28	15	26	1.96
47320829--47321109	141	2.0	142	98	0	546	32	25	14	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47322326--47322503	27	6.6	27	84	3	205	29	28	15	26	1.96
47322347--47322502	82	1.9	81	88	3	233	29	28	15	26	1.96
47334198--47334229	13	2.5	13	100	0	64	31	40	21	6	1.78
47335111--47335295	47	3.9	47	70	9	142	22	29	20	27	1.98
47335681--47335740	30	2.0	29	93	3	102	33	26	8	31	1.86
47337763--47337984	45	4.8	46	80	3	232	25	29	18	27	1.98
47344312--47344450	48	2.9	48	81	2	165	22	30	20	27	1.98
47344667--47344704	19	2.0	19	94	0	67	28	15	13	42	1.85
47347529--47347562	16	2.1	16	88	0	50	44	26	8	20	1.81
47347713--47347764	20	2.5	20	87	3	77	26	9	9	53	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250