genome.fa.s9.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  146  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47349876--47349916	21	2.0	21	85	4	57	70	0	2	26	0.99
47359427--47359456	12	2.5	12	94	0	51	43	13	16	26	1.85
47359681--47359714	17	1.9	18	94	5	61	23	20	5	50	1.70
47360407--47360456	20	2.5	21	80	6	59	36	0	6	58	1.23
47360542--47360580	9	4.3	9	86	0	51	33	2	12	51	1.54
47361399--47361437	19	2.0	19	85	14	53	48	7	10	33	1.66
47361666--47361831	82	2.0	82	92	0	278	24	12	22	40	1.88
47362544--47362607	29	2.2	29	94	0	110	32	3	15	48	1.61
47368305--47368340	17	2.1	17	94	0	63	27	19	30	22	1.98
47369798--47369840	23	1.9	22	95	4	77	23	9	30	37	1.86
47369926--47370002	16	4.7	16	78	10	75	27	7	16	48	1.74
47373032--47373073	18	2.4	17	84	4	57	11	28	42	16	1.84
47374448--47374492	16	2.8	16	79	0	54	48	8	13	28	1.72
47380963--47381027	34	1.9	34	81	6	78	26	1	12	60	1.41
47384309--47384346	19	2.0	19	100	0	76	36	15	26	21	1.93
47403496--47403527	11	3.0	11	95	4	57	18	9	0	71	1.12
47408696--47409005	47	6.6	47	89	2	460	29	29	8	32	1.87
47408696--47409005	96	3.3	96	89	4	481	29	29	8	32	1.87
47408696--47409006	143	2.2	141	88	2	462	29	29	8	32	1.87
47411609--47411888	40	7.1	40	89	1	411	25	28	22	24	1.99
47411609--47411888	119	2.3	120	88	1	411	25	28	22	24	1.99
47411941--47412015	38	2.0	38	86	5	107	24	26	18	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47414147--47414456	47	6.6	47	90	1	467	29	30	8	32	1.86
47414147--47414456	96	3.3	96	90	3	488	29	30	8	32	1.86
47414147--47414456	143	2.2	141	89	1	422	29	30	8	32	1.86
47416758--47416798	7	5.9	7	91	8	66	87	0	12	0	0.53
47416758--47416799	15	2.9	15	89	3	68	88	0	11	0	0.53
47440250--47440315	23	3.0	23	80	6	91	40	24	19	15	1.90
47440697--47440743	15	3.1	15	81	0	67	48	12	2	36	1.53
47442839--47442868	11	2.7	11	94	0	51	26	26	3	43	1.70
47443966--47444073	40	2.7	40	81	8	119	37	22	18	21	1.94
47444458--47444491	17	1.9	18	88	5	52	11	32	32	23	1.91
47446415--47446513	47	2.1	47	92	0	162	29	10	13	47	1.75
47448274--47448326	24	2.3	23	81	12	63	45	3	3	47	1.39
47450798--47450833	19	1.9	19	94	5	65	36	0	38	25	1.56
47458715--47458979	40	6.6	40	89	5	360	26	27	23	23	2.00
47461887--47462057	50	3.6	48	84	7	197	24	28	19	27	1.98
47467728--47467779	24	2.2	24	92	0	86	51	9	1	36	1.46
47468964--47469002	13	2.9	13	84	3	51	25	5	2	66	1.25
47468918--47469731	406	2.0	405	95	0	1468	31	12	12	44	1.78
47469871--47470023	77	2.0	77	96	0	279	41	4	20	32	1.73
47478664--47478775	34	3.3	34	85	3	129	40	16	16	26	1.90
47485539--47485575	16	2.5	14	84	16	56	5	27	0	67	1.12
47488308--47488576	94	2.8	93	81	8	301	25	18	30	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47488445--47488575	49	2.6	50	81	8	160	25	17	29	27	1.97
47490782--47490833	23	2.3	23	89	0	86	26	26	15	30	1.96
47492304--47492366	25	2.5	25	79	5	74	41	15	9	33	1.80
47494335--47494379	11	3.9	11	80	11	54	35	0	2	62	1.08
47496564--47496636	38	1.9	38	100	0	146	32	17	26	23	1.97
47496519--47496680	84	1.9	83	90	3	254	37	16	24	21	1.94
47498477--47498655	40	4.6	40	88	4	258	25	22	26	25	2.00
47498477--47498655	79	2.3	80	88	4	258	25	22	26	25	2.00
47506445--47506668	40	5.6	40	85	3	279	24	22	26	26	2.00
47506452--47506668	83	2.7	80	86	5	278	24	23	26	25	2.00
47514317--47514347	16	1.9	16	93	0	53	22	0	6	70	1.09
47514314--47514363	26	2.0	25	84	4	64	28	0	6	66	1.15
47515535--47515573	17	2.2	18	86	9	53	66	2	2	28	1.18
47515687--47515815	19	6.6	19	68	19	70	32	1	6	59	1.31
47515686--47515829	9	14.8	10	70	13	70	34	1	6	57	1.32
47515752--47515829	30	2.6	30	78	6	79	33	1	7	57	1.35
47518228--47518268	18	2.3	18	80	20	50	58	0	2	39	1.11
47518685--47518721	15	2.4	16	86	8	51	62	2	0	35	1.10
47520339--47520391	26	2.1	25	82	10	63	56	7	3	32	1.45
47533519--47533548	14	2.1	15	93	6	53	20	16	6	56	1.62
47533496--47533552	23	2.4	23	88	2	78	24	15	8	50	1.72
47536305--47536407	29	3.6	29	81	0	116	15	21	36	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47542138--47542355	40	5.5	40	88	2	307	24	23	26	25	2.00
47543833--47543931	34	2.9	34	83	0	126	19	22	22	36	1.95
47545111--47545151	21	2.0	20	85	4	55	53	0	26	19	1.45
47545401--47545501	50	2.0	50	100	0	202	41	15	16	25	1.88
47553735--47553781	23	2.0	23	95	0	85	46	21	8	23	1.78
47555061--47555111	23	2.3	23	82	3	59	39	3	23	33	1.73
47556246--47556390	37	3.9	37	90	0	218	26	29	18	25	1.98
47556509--47556967	47	9.7	47	93	1	760	29	29	8	32	1.87
47560565--47560655	45	2.0	45	100	0	182	30	21	10	36	1.88
47565793--47566188	47	8.4	47	94	1	650	33	8	29	29	1.87
47565793--47566188	143	2.8	141	93	1	668	33	8	29	29	1.87
47566307--47566385	37	2.1	37	86	4	106	25	17	30	26	1.97
47568971--47569076	50	2.1	50	80	3	124	42	21	7	28	1.80
47578046--47578131	39	2.2	39	85	2	120	24	32	23	19	1.98
47578057--47578139	39	2.1	39	90	0	130	24	32	21	21	1.98
47578785--47578825	21	2.0	21	95	0	73	41	14	2	41	1.59
47585669--47585695	13	2.1	13	100	0	54	14	37	33	14	1.88
47588363--47588397	15	2.3	15	90	0	52	25	0	0	74	0.82
47591099--47591188	45	2.0	45	100	0	180	31	6	24	37	1.81
47591837--47591905	21	3.3	20	78	9	75	36	1	10	52	1.44
47594675--47594714	21	1.9	21	85	10	55	30	5	20	45	1.72
47596006--47596044	20	1.9	20	84	5	51	38	0	17	43	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47599461--47599515	24	2.3	24	81	3	58	20	0	25	54	1.44
47600689--47600729	19	2.1	19	86	4	55	60	14	9	14	1.57
47601731--47601763	16	2.1	16	100	0	66	12	51	18	18	1.76
47616481--47616506	12	2.2	12	100	0	52	30	53	7	7	1.57
47619775--47619806	12	2.6	13	90	9	50	50	25	6	18	1.70
47620334--47620441	44	2.5	42	76	10	103	30	25	20	24	1.98
47626902--47626933	12	2.6	13	90	9	50	50	25	6	18	1.70
47627465--47627612	42	3.4	42	77	14	140	30	25	17	26	1.97
47627438--47627605	42	3.9	42	75	12	137	30	26	18	25	1.98
47629802--47629827	13	2.0	13	100	0	52	15	38	30	15	1.88
47631914--47632067	42	3.8	41	86	8	215	27	27	14	29	1.96
47631914--47632067	81	1.9	84	87	6	235	27	27	14	29	1.96
47632024--47632156	47	2.8	46	84	6	160	30	26	14	28	1.95
47632179--47632327	31	4.8	31	85	6	212	24	27	19	28	1.99
47632303--47632431	50	2.5	51	90	5	199	25	22	16	35	1.94
47646762--47646796	17	2.0	17	88	5	52	20	40	22	17	1.92
47649247--47649287	19	2.2	19	86	4	57	51	4	4	39	1.45
47649243--47649282	19	2.1	19	95	0	71	45	2	5	47	1.38
47655987--47656163	48	3.7	48	83	3	196	34	27	16	22	1.95
47655987--47656160	96	1.8	96	81	7	219	33	27	16	22	1.95
47662958--47662985	13	2.2	13	100	0	56	50	14	14	21	1.78
47663241--47663369	48	2.7	48	81	2	152	36	27	16	19	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47663848--47663909	29	2.2	27	82	5	70	29	25	3	41	1.71
47668487--47668742	40	6.4	40	87	3	331	26	28	22	23	1.99
47676718--47676942	40	5.6	40	87	3	276	26	26	23	24	2.00
47678814--47678958	40	3.7	40	82	2	168	24	22	24	28	1.99
47678806--47678957	80	1.9	79	82	4	189	23	21	24	30	1.99
47683731--47684233	46	11.0	46	90	0	686	41	12	23	21	1.88
47684514--47684546	17	2.0	17	94	5	59	48	0	15	36	1.45
47688983--47689019	17	2.1	18	90	5	58	16	37	35	10	1.83
47691402--47691520	60	2.0	61	85	5	161	26	26	20	26	1.99
47696593--47696623	16	1.9	16	93	0	53	35	0	22	41	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250