genome.fa.s9.2.7.7.80.10.50.1000.123.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  123  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39498053--39498259	40	5.2	40	85	6	269	21	22	27	29	1.99
39501832--39501911	31	2.6	30	78	13	83	41	3	7	47	1.50
39501885--39501928	19	2.3	20	81	18	58	47	0	4	47	1.22
39504410--39504587	38	4.6	39	75	12	154	25	29	20	24	1.99
39506191--39506224	16	2.1	17	94	5	61	64	0	11	23	1.26
39507141--39507191	16	3.2	16	97	0	93	21	11	13	52	1.72
39509812--39509922	16	6.8	17	70	18	67	62	0	1	36	1.06
39509809--39509922	25	4.6	25	76	13	103	62	0	1	35	1.06
39509801--39509925	60	2.1	60	81	14	143	63	0	1	35	1.04
39509802--39509926	17	8.1	16	70	24	76	63	0	1	35	1.04
39509803--39509954	38	4.0	36	77	17	132	61	0	2	35	1.10
39509827--39509946	21	5.6	22	71	18	78	61	0	2	35	1.09
39510334--39510361	13	2.2	13	100	0	56	46	0	7	46	1.30
39510517--39510556	21	1.9	21	90	10	64	35	2	0	62	1.09
39510513--39510574	9	6.6	9	77	17	54	33	3	0	62	1.11
39510515--39510569	17	3.1	18	79	20	62	36	1	0	61	1.06
39510633--39510671	17	2.3	17	86	8	53	23	2	5	69	1.21
39512510--39512617	51	2.1	51	96	1	200	30	11	15	42	1.82
39517202--39517262	18	3.4	18	93	0	104	36	26	9	27	1.88
39517202--39517277	18	4.4	17	90	4	84	36	25	9	28	1.87
39519898--39519965	20	3.3	21	83	6	86	54	8	25	11	1.65
39521440--39521748	155	2.0	154	99	0	609	28	27	14	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39523796--39523824	14	2.1	14	100	0	58	51	6	13	27	1.66
39537944--39538038	40	2.4	40	96	0	172	30	30	18	20	1.96
39543000--39543059	27	2.3	26	82	2	66	35	18	23	23	1.96
39543102--39543152	27	1.9	26	84	4	66	35	13	27	23	1.93
39545158--39545356	27	7.4	27	83	1	220	37	20	14	27	1.91
39547499--39547523	10	2.5	10	100	0	50	32	28	0	40	1.57
39552622--39552726	47	2.2	47	94	0	183	35	7	29	27	1.85
39562742--39562868	45	2.8	45	89	2	175	18	21	16	43	1.88
39562880--39562986	45	2.4	45	80	9	112	25	21	14	38	1.92
39562922--39563028	45	2.4	45	84	6	128	25	21	15	37	1.93
39562922--39563049	45	2.8	45	80	4	125	25	21	14	38	1.92
39564321--39564476	77	2.0	77	93	2	269	32	25	7	35	1.84
39573079--39573188	31	3.5	31	91	0	184	28	25	16	30	1.97
39573210--39573303	42	2.2	42	90	0	143	36	20	14	28	1.92
39573449--39573596	26	5.8	26	95	0	248	25	23	25	25	2.00
39573646--39573712	20	3.3	20	93	4	109	31	19	10	38	1.85
39574420--39574483	27	2.4	27	81	5	76	21	25	17	35	1.95
39574534--39574620	27	3.2	27	72	6	86	34	8	17	40	1.79
39574517--39574647	54	2.4	54	87	0	172	31	8	19	40	1.82
39574571--39574666	27	3.6	26	81	4	120	28	8	21	41	1.82
39574698--39574979	27	10.4	27	79	5	147	36	7	22	33	1.81
39574555--39574735	80	2.3	81	75	6	190	30	9	20	38	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39574782--39574884	28	3.7	28	88	6	131	29	6	22	41	1.79
39574766--39574896	28	4.8	28	77	12	112	31	6	22	40	1.78
39576248--39576360	45	2.5	45	86	0	145	22	26	13	38	1.91
39580882--39581026	46	3.1	48	77	4	159	27	22	26	23	1.99
39589570--39589594	7	3.6	7	100	0	50	56	0	16	28	1.41
39590220--39590300	25	3.2	26	86	8	98	32	0	1	66	0.99
39590238--39590300	25	2.5	25	92	2	108	31	0	0	68	0.90
39590247--39590281	17	2.1	17	89	5	54	31	0	0	68	0.90
39590365--39590403	19	2.1	19	85	9	53	28	2	2	66	1.18
39590238--39590419	26	6.9	26	69	19	78	31	1	4	62	1.24
39593146--39593272	49	2.6	49	85	5	159	29	21	28	21	1.98
39594491--39594772	50	5.7	50	84	3	327	24	18	26	29	1.98
39596047--39596314	49	5.5	49	74	13	216	29	18	27	24	1.98
39596047--39596294	96	2.6	96	90	2	381	29	18	28	24	1.98
39596480--39596608	62	2.1	62	97	0	240	32	8	23	35	1.85
39602394--39602661	46	5.7	47	76	13	232	22	29	19	27	1.98
39602392--39602661	94	2.9	91	76	13	300	22	29	19	28	1.98
39604044--39604129	44	2.0	44	90	0	136	31	26	19	22	1.98
39604858--39604896	20	2.0	20	85	10	53	35	20	0	43	1.52
39606815--39606868	24	2.2	24	96	0	99	53	3	5	37	1.42
39607350--39607467	63	1.9	59	84	6	155	42	2	4	50	1.35
39626706--39626769	32	2.0	32	100	0	128	21	18	12	46	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39637539--39637734	51	3.9	51	85	2	261	30	23	19	26	1.98
39637983--39638036	27	2.0	27	85	0	72	38	14	7	38	1.75
39648713--39648790	39	2.0	39	92	0	129	41	6	2	50	1.42
39651023--39651074	22	2.4	22	83	6	61	46	5	1	46	1.38
39651034--39651076	10	4.1	10	82	11	50	44	2	2	51	1.27
39651032--39651075	22	2.0	22	90	0	70	45	4	2	47	1.35
39669032--39669128	33	2.8	33	84	7	106	37	22	10	29	1.87
39669342--39669494	41	3.7	43	90	6	228	28	21	20	29	1.98
39673064--39673248	79	2.3	81	81	10	220	25	27	22	24	2.00
39673045--39673248	40	5.1	40	81	8	229	25	27	22	25	2.00
39675809--39676009	27	7.4	27	86	3	251	30	27	14	27	1.95
39683937--39684136	27	7.4	27	86	2	249	30	27	15	27	1.96
39687083--39687242	26	6.2	26	85	7	200	33	7	24	35	1.83
39687083--39687242	52	3.1	52	93	0	266	33	7	24	35	1.83
39687093--39687237	78	1.9	78	92	2	247	33	8	23	35	1.85
39701505--39701709	27	7.6	27	86	3	259	30	27	15	26	1.96
39706139--39706177	18	2.2	18	90	0	60	41	20	5	33	1.74
39706722--39706850	48	2.6	50	80	8	158	24	29	17	28	1.97
39706722--39707036	46	6.7	46	75	10	194	24	29	17	28	1.97
39706722--39707036	94	3.3	93	75	12	270	24	29	17	28	1.97
39717833--39717913	27	3.0	27	96	0	153	35	25	16	22	1.94
39719935--39720009	37	2.0	38	94	2	134	53	5	12	29	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39722396--39722467	36	2.0	36	88	0	108	20	29	12	37	1.90
39730722--39730749	14	2.0	14	100	0	56	57	0	14	28	1.38
39730778--39730909	43	3.1	43	100	0	264	47	9	9	32	1.70
39732121--39732149	4	7.2	4	100	0	58	75	0	0	24	0.80
39733214--39733258	18	2.4	18	92	7	72	28	0	0	71	0.87
39733296--39733360	24	2.5	26	83	13	82	23	3	4	69	1.21
39733328--39733367	20	2.1	18	90	9	62	27	0	2	70	1.01
39733409--39733439	11	2.8	11	95	0	53	58	0	0	41	0.98
39733956--39734027	16	4.5	16	69	19	51	27	5	4	62	1.36
39733937--39734034	48	2.0	48	98	0	187	29	5	4	61	1.36
39734451--39734494	3	14.7	3	100	0	88	31	0	0	68	0.90
39738560--39738678	46	2.6	44	85	7	141	28	19	28	23	1.98
39738598--39738868	49	5.7	49	72	8	179	28	19	28	23	1.99
39740833--39740872	21	1.9	21	94	0	71	7	35	35	22	1.82
39742021--39742053	14	2.5	13	95	5	57	18	6	0	75	1.00
39748265--39748306	22	1.9	22	85	0	57	26	7	50	16	1.71
39748347--39748385	20	2.0	20	89	0	60	30	17	23	28	1.97
39748475--39748527	28	1.9	28	84	3	72	30	18	24	26	1.98
39748406--39748550	61	2.4	61	83	8	170	26	19	25	28	1.99
39752793--39752837	20	2.3	20	92	3	74	31	17	24	26	1.97
39752927--39752979	28	1.9	28	84	3	72	30	18	24	26	1.98
39752858--39753002	61	2.4	61	82	8	161	26	19	26	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39770163--39770395	40	5.9	39	86	3	297	24	28	23	24	2.00
39770170--39770393	120	1.9	119	87	4	335	24	28	23	23	2.00
39783024--39783099	26	2.9	26	92	0	116	30	17	10	42	1.82
39788007--39788045	19	2.1	19	95	0	69	28	23	7	41	1.82
39789830--39789933	39	2.7	39	92	0	172	23	21	27	27	1.99
39789830--39789991	39	4.2	39	82	4	159	22	22	27	27	1.99
39795217--39795259	15	2.9	15	78	0	59	18	25	13	41	1.88
39799836--39799902	31	2.1	32	94	2	118	44	13	17	23	1.85
39805984--39806024	15	2.7	15	92	0	73	26	26	4	41	1.76
39809285--39809381	25	3.8	25	83	4	113	24	21	23	29	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250