genome.fa.s9.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  134  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43242174--43242257	26	3.4	26	67	11	77	38	1	20	40	1.60
43250573--43250635	24	2.7	24	80	2	74	25	12	17	44	1.84
43250573--43250642	23	3.0	23	78	2	77	27	11	17	44	1.82
43256835--43256934	35	2.9	34	83	7	130	39	0	13	48	1.42
43256835--43256934	34	2.9	34	85	7	121	39	0	13	48	1.42
43257017--43257396	124	3.1	124	85	4	472	39	16	15	28	1.89
43262316--43262372	28	2.0	28	83	6	71	52	0	3	43	1.18
43262421--43262456	17	2.1	17	94	0	63	75	0	19	5	1.00
43262422--43262494	11	6.6	10	76	17	56	71	1	23	4	1.11
43263409--43263497	41	2.2	41	89	2	135	32	19	25	22	1.97
43263421--43263498	41	1.9	40	94	2	138	34	19	24	21	1.96
43263596--43263687	37	2.5	37	85	1	121	50	31	0	18	1.48
43263818--43263861	15	3.0	15	83	3	54	20	2	29	47	1.62
43264851--43264891	3	13.7	3	94	0	73	65	2	0	31	1.05
43270912--43270936	3	8.3	3	100	0	50	32	0	36	32	1.58
43273834--43273872	19	2.1	19	85	0	51	25	2	7	64	1.33
43273845--43273887	19	2.3	18	80	11	50	20	2	6	69	1.23
43279855--43279940	43	2.0	43	86	0	118	56	6	6	29	1.52
43280039--43280068	12	2.5	12	94	0	51	36	40	0	23	1.55
43281117--43281160	17	2.5	17	82	17	54	70	0	0	29	0.88
43288143--43288181	17	2.3	17	86	0	51	71	2	23	2	1.10
43289920--43290094	46	3.8	45	79	7	199	28	29	20	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43289928--43290099	93	1.8	93	93	0	299	27	30	20	20	1.98
43289925--43290114	46	4.1	44	70	18	118	28	28	20	21	1.98
43298969--43299044	27	2.8	26	84	5	98	35	18	23	22	1.96
43299152--43299225	26	2.8	26	85	4	85	31	10	22	35	1.89
43300667--43300773	26	4.2	26	92	1	180	36	23	7	32	1.83
43305999--43306103	27	3.9	27	87	7	142	33	21	25	19	1.97
43306207--43306282	26	2.8	27	84	4	91	31	13	19	35	1.90
43307724--43307831	26	4.2	26	93	0	189	36	24	7	32	1.83
43314057--43314130	23	3.1	22	83	11	85	45	16	6	31	1.73
43319444--43319499	3	18.7	3	100	0	112	67	0	32	0	0.91
43320036--43320106	31	2.3	31	85	7	92	21	7	19	52	1.70
43322179--43322339	76	2.1	76	86	2	216	34	13	26	25	1.92
43323400--43323429	15	1.9	16	93	6	53	26	0	33	40	1.57
43326739--43326831	33	2.8	34	79	12	122	33	23	10	32	1.89
43328460--43328486	10	2.7	10	100	0	54	37	0	33	29	1.58
43330142--43330187	22	2.1	21	84	4	56	13	4	2	80	0.95
43333698--43333777	38	2.1	38	95	0	142	32	13	3	50	1.60
43339062--43339093	16	2.1	16	88	11	50	59	18	0	21	1.38
43339145--43339191	21	2.2	21	85	7	60	65	8	2	23	1.31
43343626--43343872	41	6.0	41	83	0	271	34	22	23	19	1.96
43343647--43343871	82	2.8	82	85	0	299	35	23	23	18	1.95
43344759--43344827	8	9.0	8	84	9	90	66	1	0	31	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43344754--43344816	14	4.4	14	86	7	90	71	0	0	28	0.86
43344753--43344829	30	2.6	29	85	4	100	70	1	0	28	0.96
43344759--43344834	37	2.0	38	87	2	109	64	1	0	34	1.02
43344753--43344829	8	10.3	7	84	8	82	70	1	0	28	0.96
43346064--43346096	17	1.9	17	93	0	57	33	9	24	33	1.87
43347531--43347568	18	2.2	18	85	4	51	26	0	2	71	1.00
43347670--43347723	28	2.0	28	85	3	74	27	3	3	64	1.27
43348042--43348090	21	2.4	21	82	3	55	10	8	4	77	1.10
43352228--43352256	4	7.5	4	92	7	51	48	0	0	51	1.00
43366274--43366316	18	2.4	18	80	0	50	25	6	9	58	1.54
43366556--43366608	12	4.4	12	82	0	52	30	11	0	58	1.33
43366546--43366601	3	19.0	3	77	3	60	32	8	0	58	1.29
43378727--43378972	44	5.7	44	69	13	188	37	21	21	18	1.94
43378693--43379187	86	5.7	86	81	7	477	37	21	21	20	1.95
43378944--43379238	89	3.4	89	79	7	257	36	22	20	20	1.95
43379296--43379424	45	2.9	45	86	5	138	31	20	24	22	1.98
43379332--43379424	45	2.1	45	95	0	168	31	23	24	20	1.98
43379340--43379446	45	2.4	45	88	0	151	30	22	22	24	1.99
43383512--43383570	27	2.1	29	90	6	95	61	0	0	38	0.96
43383763--43383817	27	2.0	27	100	0	110	32	3	18	45	1.67
43387102--43387176	24	3.0	25	76	9	82	44	1	2	52	1.23
43387158--43387197	20	2.0	20	85	14	55	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43387165--43387206	20	2.2	20	83	12	52	47	2	0	50	1.14
43387138--43387406	129	2.1	128	80	7	312	38	2	4	55	1.32
43387301--43387343	18	2.4	18	85	11	54	34	0	0	65	0.93
43387412--43387461	12	3.7	13	76	23	50	48	0	0	52	1.00
43387397--43387467	30	2.4	29	77	17	74	45	0	0	54	0.99
43390725--43390820	30	3.2	28	78	14	95	28	20	25	26	1.99
43393044--43393113	17	4.1	16	80	10	77	44	1	1	52	1.18
43393045--43393115	9	8.1	9	74	16	51	45	1	1	52	1.18
43393179--43393322	71	2.0	71	90	0	225	43	3	3	49	1.36
43393421--43393459	17	2.3	17	86	0	51	46	5	5	43	1.48
43393461--43393500	20	2.0	21	85	5	55	37	5	0	57	1.21
43398008--43398084	3	25.7	3	70	10	50	59	5	6	28	1.44
43399072--43399118	18	2.7	17	84	12	60	80	4	2	12	0.94
43399070--43399118	25	2.0	25	84	8	64	81	4	2	12	0.91
43399117--43399150	7	4.9	7	100	0	68	58	26	14	0	1.36
43399942--43400253	44	7.2	44	68	10	237	16	24	23	35	1.95
43399913--43400251	87	3.9	86	93	1	561	17	23	23	35	1.95
43399895--43400230	43	7.7	43	70	12	247	18	22	23	35	1.96
43408312--43408353	19	2.2	20	86	4	59	47	7	19	26	1.74
43413091--43413178	3	29.3	3	71	8	63	61	4	5	28	1.39
43414173--43414224	19	2.8	17	74	25	52	82	3	3	9	0.91
43414173--43414221	24	2.0	23	85	14	64	83	4	2	10	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43415348--43415428	26	3.1	26	96	0	144	33	4	24	37	1.77
43418512--43418571	32	1.9	32	83	6	79	46	16	1	35	1.57
43421505--43421620	53	2.2	54	81	7	130	27	29	22	20	1.99
43427237--43427374	73	1.9	73	92	0	231	40	13	16	28	1.87
43434662--43435548	444	2.0	444	99	0	1738	31	13	20	34	1.91
43439760--43439797	20	1.9	19	89	5	58	15	7	2	73	1.17
43452661--43452756	45	2.1	45	84	3	122	22	20	13	42	1.87
43452767--43452838	37	1.9	37	88	0	108	25	18	13	43	1.86
43454040--43454193	77	2.0	77	98	0	299	50	18	11	19	1.78
43475681--43475719	12	3.2	12	88	3	51	23	0	5	71	1.05
43479834--43480008	60	2.9	58	81	10	185	24	20	29	26	1.99
43480514--43480549	14	2.6	14	90	0	54	27	22	8	41	1.82
43487473--43487528	22	2.6	20	78	13	58	33	17	14	33	1.90
43490268--43490347	36	2.2	36	97	0	151	31	1	13	53	1.48
43490288--43490354	19	3.6	19	72	22	70	26	1	14	56	1.47
43497083--43497139	24	2.4	24	79	5	62	26	10	47	15	1.78
43497100--43497146	24	2.0	24	86	0	67	17	10	48	23	1.77
43497168--43497214	24	2.0	24	87	8	69	34	14	12	38	1.85
43502679--43502755	20	3.8	20	71	6	66	36	19	31	12	1.90
43505292--43505359	34	2.0	35	94	2	120	27	35	7	29	1.84
43506839--43506863	13	1.9	13	100	0	50	48	16	4	32	1.64
43506886--43507118	9	26.3	9	67	20	75	56	15	2	25	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43506886--43507048	13	12.0	13	70	20	68	57	15	1	25	1.46
43506936--43507000	19	3.4	20	81	14	75	58	9	3	29	1.44
43506950--43507134	38	5.0	38	72	18	113	57	14	3	25	1.52
43506892--43507190	69	4.4	68	85	3	354	56	15	2	26	1.50
43506993--43507099	31	3.3	31	71	19	99	54	18	2	24	1.57
43506914--43507199	15	19.3	15	66	23	83	56	14	2	26	1.51
43506892--43507190	137	2.2	136	84	3	388	56	15	2	26	1.50
43507232--43507390	13	12.4	13	67	17	73	51	21	6	20	1.70
43507224--43507345	54	2.3	54	85	2	165	50	22	4	22	1.67
43507491--43507555	30	2.2	30	83	5	78	63	6	9	21	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250