genome.fa.s9.2.7.7.80.10.50.1000.166.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  166  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53404220--53404289	27	2.6	27	74	0	68	12	31	37	18	1.89
53410390--53410437	19	2.6	19	93	3	80	41	4	8	45	1.53
53419002--53419026	11	2.3	11	100	0	50	84	0	0	16	0.63
53419013--53419056	22	2.0	22	86	0	61	59	2	0	38	1.10
53423604--53423639	7	5.0	7	86	6	54	66	0	2	30	1.06
53423604--53423639	15	2.5	14	86	8	54	66	0	2	30	1.06
53423624--53423729	10	10.2	10	70	21	58	60	0	8	31	1.27
53423784--53423836	26	2.1	25	82	3	61	58	5	1	33	1.32
53423913--53423965	18	2.9	18	81	13	56	66	0	1	32	1.03
53425569--53426229	44	15.5	44	82	6	781	28	28	14	29	1.95
53425782--53425848	33	2.0	33	97	0	125	25	29	17	26	1.98
53425658--53426127	165	2.8	165	91	0	753	28	28	15	27	1.96
53438121--53438158	7	5.3	7	87	6	58	68	0	2	28	1.03
53438290--53438362	26	2.8	26	78	12	69	64	4	1	30	1.20
53438428--53438480	18	2.9	18	81	13	56	66	0	1	32	1.03
53440736--53440848	43	2.6	44	83	5	124	23	19	27	29	1.98
53445092--53445460	46	8.0	46	92	0	558	38	14	24	22	1.92
53449232--53449275	22	2.0	22	90	0	70	54	2	2	40	1.25
53451145--53451184	10	3.9	10	93	6	71	32	17	20	30	1.95
53451144--53451184	21	2.0	21	100	0	82	34	17	19	29	1.94
53451230--53451299	25	2.8	25	97	0	131	25	27	22	24	2.00
53451230--53451324	50	1.9	50	82	8	122	26	25	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53451520--53451586	31	2.2	31	94	0	116	38	13	25	22	1.90
53458988--53459038	25	2.0	25	92	0	84	31	23	17	27	1.97
53459078--53459117	10	3.9	10	93	6	71	32	17	20	30	1.95
53459077--53459117	21	2.0	21	100	0	82	34	17	19	29	1.94
53459403--53459472	31	2.3	31	94	0	122	38	15	22	22	1.92
53460820--53460876	23	2.5	24	78	16	66	50	3	0	45	1.18
53461108--53461134	3	9.0	3	100	0	54	33	0	0	66	0.92
53467414--53467607	100	1.9	100	85	2	264	14	24	18	42	1.88
53471610--53471687	24	3.2	24	87	0	120	37	3	39	19	1.70
53479608--53479780	46	3.7	46	77	10	199	23	20	26	29	1.99
53479605--53479775	93	1.8	93	93	0	297	23	21	26	28	1.99
53490918--53490959	19	2.2	19	87	8	59	2	21	0	76	0.90
53494642--53494819	27	6.6	27	83	3	196	29	29	15	26	1.96
53494642--53494819	54	3.3	54	86	3	232	29	29	15	26	1.96
53494663--53494818	81	1.9	82	88	1	233	28	29	15	26	1.96
53502711--53502888	27	6.6	27	82	3	178	29	29	14	26	1.95
53502711--53502888	54	3.3	54	85	3	223	29	29	14	26	1.95
53502740--53502910	54	3.2	53	85	5	218	28	28	14	28	1.95
53515310--53515360	25	2.0	25	88	0	75	31	21	21	25	1.98
53515400--53515439	10	3.9	10	93	6	71	32	17	20	30	1.95
53515399--53515439	21	2.0	21	100	0	82	34	17	19	29	1.94
53515484--53515554	25	2.9	24	91	6	115	26	28	21	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53515485--53515579	50	1.9	50	82	8	122	28	25	22	24	1.99
53515775--53515856	31	2.7	31	81	10	107	36	15	21	25	1.94
53517870--53518084	46	4.6	48	82	8	246	22	28	19	29	1.98
53517870--53518084	94	2.3	94	86	1	306	22	28	19	29	1.98
53518733--53518783	20	2.7	18	82	14	59	37	21	0	41	1.54
53519923--53519966	21	2.1	21	95	0	79	29	9	22	38	1.85
53528963--53529002	17	2.4	17	100	0	80	32	10	27	30	1.89
53534385--53534452	34	2.0	34	83	11	86	32	19	23	25	1.97
53536079--53536141	21	3.2	21	63	28	57	28	22	1	47	1.60
53536067--53536141	37	2.0	37	97	0	141	29	21	1	48	1.59
53539083--53539210	43	3.0	43	79	4	150	25	17	26	29	1.98
53546611--53546818	38	5.4	38	82	3	202	31	25	20	22	1.98
53546611--53546769	76	2.1	78	86	2	223	33	25	20	20	1.97
53551351--53551482	43	3.1	43	78	12	171	23	16	28	31	1.96
53559108--53559150	16	2.8	15	75	6	50	39	18	0	41	1.51
53568265--53568427	39	4.2	39	95	0	290	30	26	16	26	1.97
53568225--53568402	78	2.3	78	88	0	248	30	27	16	24	1.97
53568940--53568985	6	8.5	6	86	13	57	15	0	0	84	0.62
53568940--53568983	16	2.8	15	90	10	70	15	0	0	84	0.63
53568940--53568984	10	4.3	10	81	10	54	15	0	0	84	0.62
53576845--53576968	39	3.2	39	96	0	230	29	25	17	27	1.98
53576802--53576968	78	2.1	78	86	2	228	29	26	19	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53578758--53578883	28	4.5	28	95	1	209	31	28	13	26	1.94
53578758--53578908	28	5.4	28	91	1	205	32	28	13	25	1.93
53579357--53579384	14	2.0	14	100	0	56	42	0	7	50	1.30
53586896--53587046	28	5.4	28	91	1	205	32	28	13	25	1.93
53588969--53589011	6	7.5	6	87	7	63	13	0	0	86	0.58
53588966--53589011	11	4.1	11	86	5	65	15	0	0	84	0.62
53590435--53590540	55	1.9	55	82	0	131	27	23	29	19	1.98
53609571--53609675	24	4.5	23	73	7	86	37	15	21	25	1.93
53611936--53611991	22	2.5	23	72	16	55	30	17	14	37	1.90
53629680--53629716	17	2.2	17	90	0	56	59	10	5	24	1.52
53647270--53647324	27	2.0	27	92	0	92	40	25	10	23	1.87
53651840--53651919	6	13.3	6	86	0	97	17	3	3	75	1.11
53655574--53655637	7	8.7	7	74	17	51	26	1	3	68	1.13
53655587--53655637	18	2.8	19	88	8	72	23	1	3	70	1.14
53658631--53658691	6	10.8	5	81	16	59	18	1	4	75	1.06
53658631--53658691	18	3.6	16	80	10	68	18	1	4	75	1.06
53664356--53664398	6	6.5	6	82	17	50	79	0	0	20	0.74
53664357--53664397	21	2.0	22	90	9	68	78	0	0	21	0.76
53681426--53681472	21	2.2	22	92	3	78	21	38	19	21	1.94
53685180--53685213	15	2.3	15	90	10	52	23	5	2	67	1.26
53689996--53690033	20	2.0	20	94	5	69	0	28	0	71	0.87
53689994--53690026	16	2.0	17	88	5	50	0	30	0	69	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53690086--53690139	19	2.8	19	80	0	63	38	3	0	57	1.17
53696012--53696044	6	5.5	6	100	0	66	84	0	0	15	0.61
53696064--53696113	9	5.6	9	87	0	73	28	8	16	48	1.74
53697087--53697136	20	2.5	20	96	0	91	34	24	14	28	1.93
53697464--53697501	20	2.0	20	94	5	69	0	26	2	71	1.00
53700690--53700717	5	5.6	5	100	0	56	17	0	0	82	0.68
53701100--53701152	27	2.0	27	92	0	88	18	30	32	18	1.96
53702368--53702426	26	2.2	27	78	3	66	25	1	1	71	1.05
53722113--53722197	43	2.0	43	95	4	154	30	18	17	32	1.95
53722487--53722526	15	2.5	17	84	12	57	70	0	15	15	1.18
53722489--53722528	16	2.6	16	92	4	64	67	0	12	20	1.22
53722501--53722534	16	2.1	16	88	0	50	73	2	8	14	1.19
53722927--53722963	17	2.2	16	90	4	56	21	0	2	75	0.92
53722928--53722989	6	10.5	6	77	16	58	17	0	3	79	0.87
53722928--53722989	24	2.7	22	85	7	70	17	0	3	79	0.87
53722928--53722989	30	2.1	30	87	3	90	17	0	3	79	0.87
53735032--53735069	8	4.3	9	84	15	53	78	2	0	18	0.86
53735259--53735310	25	2.1	25	85	0	68	48	28	7	15	1.73
53736843--53737072	40	5.8	40	90	1	318	24	27	21	26	1.99
53740388--53740451	26	2.3	29	81	10	80	32	12	4	50	1.61
53745272--53745596	169	1.9	169	93	2	564	41	18	10	30	1.83
53746630--53746765	61	2.2	61	82	3	166	19	28	30	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53748274--53748314	19	2.2	18	86	4	55	34	19	0	46	1.50
53765465--53765530	34	1.9	34	84	0	87	45	15	6	33	1.70
53767504--53767533	15	2.0	15	100	0	60	0	20	0	80	0.72
53768049--53768206	63	2.5	64	88	4	232	29	19	22	27	1.98
53769025--53769084	26	2.3	26	91	0	93	30	13	18	38	1.89
53770525--53770580	21	2.7	21	100	0	112	32	12	25	30	1.92
53771868--53772022	40	3.9	40	87	1	222	14	16	27	42	1.86
53772557--53772593	5	7.6	5	88	11	51	18	0	0	81	0.70
53772565--53772599	17	2.0	17	88	5	52	22	0	0	77	0.78
53777523--53777547	12	2.1	12	100	0	50	52	8	8	32	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250