genome.fa.s9.2.7.7.80.10.50.1000.235.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  235  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72540031--72540111	22	3.6	23	77	8	78	55	2	0	41	1.13
72540043--72540126	23	3.8	22	74	13	75	55	1	0	42	1.07
72547598--72547681	38	2.2	38	86	0	114	22	22	25	29	1.99
72547674--72547828	43	3.6	43	95	0	274	10	23	34	30	1.90
72547818--72548727	443	2.1	443	95	1	1655	32	11	23	32	1.91
72548601--72548712	45	2.5	45	83	8	124	26	22	25	25	2.00
72550154--72550192	18	2.2	18	85	0	51	58	5	0	35	1.20
72558201--72558272	29	2.5	29	72	20	69	51	13	1	33	1.50
72558584--72558675	47	1.9	47	84	2	121	45	13	11	29	1.79
72568454--72568508	5	11.8	5	98	1	82	65	12	0	21	1.26
72584775--72584837	30	2.1	30	93	0	108	38	20	15	25	1.92
72587508--72587770	89	3.0	88	92	1	431	38	18	16	26	1.92
72589846--72589980	59	2.3	59	85	7	170	30	5	12	51	1.64
72591608--72591783	46	3.8	46	79	12	216	20	21	29	28	1.98
72591605--72591776	93	1.8	93	96	0	317	20	21	29	27	1.98
72598261--72598300	6	6.7	6	91	0	53	10	0	35	55	1.34
72604433--72604608	46	3.8	46	79	12	216	20	21	29	28	1.98
72604430--72604601	93	1.8	93	96	0	317	20	21	29	27	1.98
72606616--72606704	44	2.0	44	100	0	178	26	13	13	46	1.80
72608484--72608531	20	2.4	21	86	10	73	22	0	6	70	1.09
72608686--72608828	43	3.3	43	88	0	214	23	19	27	29	1.98
72610253--72610310	30	1.9	30	89	3	89	56	6	20	15	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72617367--72617424	30	1.9	30	89	3	89	56	6	20	15	1.62
72620106--72620146	13	2.9	14	82	17	50	21	0	17	60	1.35
72622449--72622570	50	2.4	51	91	2	201	36	14	22	26	1.93
72622553--72622670	31	3.8	31	88	2	166	26	17	27	27	1.98
72622669--72622695	7	3.9	7	100	0	54	44	14	25	14	1.84
72622701--72622865	47	3.6	47	84	7	173	28	15	26	29	1.96
72622888--72622971	42	2.0	42	88	4	125	32	13	23	30	1.93
72634903--72634989	21	4.0	23	80	10	92	37	25	21	14	1.92
72635360--72635417	15	3.8	15	83	2	80	50	13	0	36	1.42
72638192--72638253	23	2.7	23	80	9	65	41	14	6	37	1.72
72640196--72640278	35	2.4	35	100	0	166	30	19	2	48	1.62
72642399--72642450	18	2.9	18	88	0	77	30	17	34	17	1.93
72642544--72642671	44	2.9	44	77	7	136	35	20	28	14	1.92
72645277--72645306	7	4.3	7	95	0	51	36	3	30	30	1.74
72645233--72645347	51	2.3	51	92	0	185	32	14	23	29	1.94
72650166--72650209	23	2.0	21	82	8	52	52	6	0	40	1.28
72663541--72663674	67	2.0	67	98	0	259	14	15	22	47	1.82
72677450--72677489	16	2.5	16	88	8	55	45	5	0	50	1.23
72678792--72678825	17	2.0	17	100	0	68	11	11	17	58	1.62
72681368--72681451	39	2.2	39	80	8	91	55	3	1	39	1.25
72681393--72681456	21	2.9	22	78	17	71	56	3	3	37	1.31
72683401--72683429	14	2.0	15	93	6	51	72	0	0	27	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72686615--72686661	15	3.1	15	78	9	51	48	0	0	51	1.00
72687347--72687416	11	6.4	11	79	0	50	67	10	5	17	1.39
72692997--72693069	36	2.0	36	91	0	119	34	24	10	30	1.90
72695520--72695569	18	2.8	18	81	3	57	34	0	0	66	0.92
72695518--72695569	25	2.0	26	85	10	72	36	0	0	63	0.95
72695527--72695572	17	2.6	18	82	3	58	36	0	0	63	0.95
72698878--72698911	10	3.6	10	84	15	54	44	0	8	47	1.34
72703550--72703676	46	2.8	46	97	0	236	36	12	25	25	1.91
72709044--72709095	23	2.2	24	86	10	72	63	1	0	34	1.06
72709106--72709171	14	4.5	14	76	17	55	66	1	1	30	1.10
72719535--72719559	11	2.3	11	100	0	50	72	8	0	20	1.10
72726448--72726485	20	1.9	20	89	10	60	60	10	5	23	1.50
72726470--72726511	15	2.9	15	75	3	50	61	9	0	28	1.27
72726628--72726656	3	9.7	3	100	0	58	68	0	0	31	0.89
72727517--72727556	17	2.3	18	80	20	50	57	5	2	35	1.34
72737033--72737104	37	1.9	37	97	0	135	38	19	13	27	1.90
72737476--72737769	146	2.0	146	100	0	588	37	21	16	25	1.93
72743209--72743319	38	2.8	40	75	8	111	23	20	26	29	1.99
72743209--72743339	39	3.3	39	71	12	99	24	21	25	28	1.99
72747812--72747875	13	4.9	13	81	7	67	34	7	23	34	1.84
72759043--72759203	51	3.2	51	91	1	270	31	22	12	34	1.91
72764282--72764492	51	4.2	51	92	1	334	29	22	13	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72764279--72764492	101	2.1	102	92	0	349	29	22	13	34	1.93
72771268--72771351	42	2.0	42	100	0	168	26	4	23	45	1.73
72783566--72783647	29	2.7	31	81	9	96	54	2	1	41	1.21
72785173--72785289	20	5.4	20	68	17	65	60	2	3	33	1.27
72785173--72785288	29	3.9	29	70	13	85	60	2	3	33	1.27
72785217--72785279	21	3.2	19	79	16	58	63	3	1	31	1.19
72785858--72785901	18	2.4	18	85	11	54	31	0	4	63	1.14
72785858--72785926	10	7.6	9	76	10	61	33	1	4	60	1.25
72785858--72785909	18	2.8	18	77	13	52	32	0	5	61	1.20
72790604--72790644	20	2.1	20	86	4	57	43	4	9	41	1.59
72805780--72805844	29	2.4	26	78	14	76	47	3	1	47	1.27
72805786--72805843	29	2.0	29	89	0	89	46	3	1	48	1.29
72805945--72805984	17	2.4	17	83	4	55	55	0	0	45	0.99
72807519--72807697	47	3.8	50	78	15	175	29	26	20	22	1.99
72817066--72817165	31	3.3	29	78	9	83	50	5	3	42	1.39
72818333--72818375	12	3.5	13	84	9	54	4	18	0	76	0.95
72837635--72837803	82	2.1	82	96	0	311	29	2	6	60	1.36
72846316--72846367	25	2.0	27	85	11	72	28	19	1	50	1.58
72847142--72847285	70	2.0	71	82	6	177	30	19	22	27	1.98
72858294--72858319	13	2.0	13	100	0	52	23	23	7	46	1.78
72858880--72858910	4	7.8	4	92	0	53	29	0	19	51	1.47
72858877--72858910	12	2.8	12	90	0	59	32	0	17	50	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72858877--72858912	8	4.5	8	92	0	54	33	0	16	50	1.46
72862368--72862448	31	2.6	31	80	3	92	58	13	4	23	1.55
72881596--72881658	28	2.2	28	91	0	99	30	7	31	30	1.86
72883308--72883442	39	3.4	39	76	8	123	23	20	27	28	1.99
72892703--72892727	5	5.0	5	100	0	50	60	0	0	40	0.97
72897154--72897212	30	2.0	30	96	0	109	25	6	13	54	1.64
72903833--72903905	35	2.1	35	100	0	146	35	30	10	23	1.89
72916771--72916822	25	2.1	25	96	0	95	53	17	15	13	1.72
72919989--72920033	23	2.0	23	81	0	54	44	2	0	53	1.13
72924619--72924644	4	6.5	4	100	0	52	26	23	23	26	2.00
72924818--72924908	44	2.1	44	97	0	173	40	8	14	36	1.77
72933410--72933461	24	2.1	26	85	7	72	63	0	0	36	0.95
72933595--72933657	30	2.1	30	82	2	74	44	6	6	42	1.55
72936482--72936612	61	2.2	60	83	1	154	42	4	12	39	1.64
72940488--72940560	31	2.3	31	85	2	92	38	13	9	38	1.78
72940994--72941032	11	3.4	11	85	7	51	43	0	0	56	0.99
72947695--72947823	50	2.5	51	89	2	206	34	16	23	25	1.95
72947798--72947978	31	5.8	31	88	2	247	29	18	25	25	1.98
72947996--72948119	47	2.7	46	83	2	158	28	14	27	29	1.95
72948078--72948211	49	2.9	48	82	8	154	30	12	26	30	1.93
72951246--72951295	23	2.1	24	82	10	59	48	4	8	40	1.51
72955821--72955867	21	2.2	22	88	3	69	38	17	17	27	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72957709--72957775	20	3.3	20	74	14	57	55	4	2	37	1.36
72958205--72958246	22	1.9	22	85	9	59	35	4	0	59	1.19
72960389--72960441	3	17.3	3	80	3	52	30	9	0	60	1.28
72963370--72963788	132	3.2	132	89	2	590	26	18	17	36	1.94
72963370--72963836	132	3.5	132	87	2	562	28	17	18	35	1.94
72965988--72966150	39	4.2	39	91	0	254	12	26	23	36	1.91
72966105--72966168	18	3.4	18	69	12	56	18	25	21	34	1.96
72970349--72970378	11	2.7	11	94	0	51	40	0	0	60	0.97
72972428--72972470	18	2.2	20	80	8	54	60	2	4	32	1.30
72974633--72975444	56	14.3	56	78	9	654	38	16	14	29	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250