genome.fa.s9.2.7.7.80.10.50.1000.163.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  163  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52476915--52476977	31	2.0	31	96	0	117	49	0	25	25	1.51
52476918--52476972	18	3.3	18	65	29	50	50	0	25	23	1.49
52477487--52477525	19	2.1	19	85	4	53	38	0	15	46	1.46
52481061--52481399	183	1.9	183	96	0	633	35	13	10	41	1.78
52482988--52483326	183	1.9	183	97	0	642	40	10	13	35	1.79
52489809--52489868	30	2.0	30	90	6	95	33	15	25	26	1.95
52495135--52495186	27	1.9	27	84	0	68	15	26	26	30	1.96
52501848--52501906	21	2.8	20	73	16	57	57	1	3	37	1.25
52504231--52504270	17	2.4	17	100	0	80	65	0	5	30	1.14
52504239--52504280	17	2.4	17	88	4	57	59	2	2	35	1.23
52504578--52504627	26	1.9	26	88	8	75	64	2	0	34	1.05
52504577--52504629	22	2.3	23	78	15	65	64	1	0	33	1.05
52504583--52504640	28	2.1	28	83	6	73	63	1	0	34	1.04
52506091--52506635	204	2.7	206	90	1	860	28	22	18	30	1.97
52518624--52518697	30	2.7	27	73	17	71	58	1	5	35	1.30
52518700--52518749	26	1.9	26	92	8	84	62	2	0	36	1.07
52518699--52518760	22	2.8	23	72	13	58	66	1	0	32	1.02
52518701--52518755	26	2.1	26	83	10	67	65	1	0	32	1.03
52524429--52524467	18	2.1	19	85	4	53	43	15	12	28	1.83
52526841--52527055	27	8.0	27	85	0	295	38	21	8	31	1.84
52526841--52527134	81	3.6	81	84	2	306	37	21	9	30	1.86
52526841--52527134	27	10.9	27	79	5	274	37	21	9	30	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52527166--52527361	27	7.3	27	86	0	248	34	18	20	26	1.96
52527166--52527361	81	2.4	80	87	1	275	34	18	20	26	1.96
52527560--52527642	27	3.1	26	89	5	121	19	22	21	36	1.95
52527729--52527787	22	2.7	22	81	0	64	20	25	22	32	1.98
52527960--52528025	27	2.5	27	83	11	75	18	21	22	37	1.94
52528143--52528303	6	26.5	6	72	16	109	22	17	13	47	1.82
52528147--52528308	85	1.9	85	87	5	238	21	16	13	48	1.81
52545436--52545476	20	2.0	20	100	0	82	51	4	29	14	1.63
52546319--52546400	28	2.9	28	94	0	137	25	8	29	36	1.86
52561952--52562066	56	2.1	56	91	4	189	45	13	13	26	1.82
52563428--52563502	29	2.6	29	76	14	82	50	6	12	30	1.65
52564502--52564563	29	2.1	30	84	6	81	40	3	9	46	1.53
52569671--52569742	32	2.3	31	95	4	135	37	6	25	30	1.82
52570681--52570771	36	2.5	37	89	5	148	27	16	3	52	1.59
52584489--52584544	22	2.6	22	86	5	71	46	0	0	53	1.00
52584552--52584590	13	2.9	14	85	14	55	53	0	0	46	1.00
52585107--52585144	13	2.8	14	88	8	60	34	21	7	36	1.82
52586530--52586775	27	9.1	27	80	4	264	27	21	9	41	1.84
52586530--52586770	54	4.5	54	86	2	313	27	21	9	41	1.84
52586530--52586775	81	3.0	81	84	5	309	27	21	9	41	1.84
52586780--52586974	27	7.2	27	83	2	221	36	17	19	26	1.94
52586780--52586975	54	3.6	54	84	2	250	36	18	19	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52587174--52587256	27	3.1	26	86	5	103	19	20	21	38	1.93
52587344--52587402	22	2.7	22	81	0	64	20	25	22	32	1.98
52587567--52587640	27	2.8	27	85	6	89	17	24	21	36	1.95
52587787--52587975	6	31.2	6	72	16	140	20	17	13	49	1.79
52587758--52587975	116	1.9	116	94	0	382	21	17	12	49	1.79
52591053--52591081	11	2.6	11	100	0	58	37	6	6	48	1.57
52598468--52598660	27	7.1	27	82	0	224	35	19	20	24	1.95
52608433--52608517	32	2.7	32	84	0	116	29	25	18	25	1.98
52609573--52609684	18	6.2	18	73	6	84	36	15	11	36	1.83
52609567--52609684	36	3.3	35	79	4	119	35	15	11	38	1.83
52609567--52609684	54	2.2	54	76	0	128	35	15	11	38	1.83
52610017--52610049	17	1.9	17	88	11	50	30	18	0	51	1.46
52610597--52610629	13	2.3	15	90	10	52	54	0	0	45	0.99
52610722--52610760	4	9.2	4	83	10	51	43	2	0	53	1.14
52615281--52615314	17	2.0	17	88	0	50	55	14	0	29	1.40
52615672--52615720	24	2.0	24	100	0	98	20	12	18	48	1.79
52623027--52623074	24	2.0	25	91	4	80	22	22	18	35	1.96
52628092--52628124	17	1.9	17	100	0	66	12	42	27	18	1.85
52630944--52631051	26	4.2	26	91	0	180	35	24	8	32	1.85
52632610--52632651	22	2.1	19	86	13	57	45	0	0	54	0.99
52632610--52632648	16	2.5	15	83	8	51	46	0	0	53	1.00
52634263--52634299	9	4.1	9	89	0	56	29	8	13	48	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52634352--52634384	9	3.7	9	91	0	57	39	24	12	24	1.89
52634352--52634386	18	1.9	18	100	0	70	37	22	11	28	1.89
52634634--52634691	25	2.3	26	82	11	68	37	3	3	55	1.34
52640633--52640895	131	2.0	131	100	0	526	30	9	24	36	1.86
52641439--52641489	14	3.6	14	79	10	59	37	23	11	27	1.90
52641434--52641496	28	2.3	28	80	2	83	39	22	9	28	1.85
52647847--52648131	41	7.0	41	82	5	292	31	20	24	22	1.98
52647847--52648131	82	3.5	82	82	1	322	31	20	24	22	1.98
52647847--52648131	123	2.3	123	84	4	353	31	20	24	22	1.98
52648387--52648437	15	3.5	15	75	2	50	23	1	27	47	1.63
52649018--52649088	7	10.3	7	73	14	58	77	2	0	19	0.89
52649021--52649096	14	5.4	14	84	3	91	75	3	0	21	0.97
52649041--52649108	20	3.1	21	79	10	75	70	1	0	27	0.96
52649035--52649105	7	10.0	7	79	8	72	73	1	0	25	0.92
52649171--52649208	18	2.2	16	90	9	58	73	0	2	23	0.95
52655511--52655551	19	2.2	19	86	4	57	21	2	4	70	1.18
52661896--52662045	67	2.2	67	81	8	171	32	17	28	21	1.96
52661920--52662103	67	2.8	64	77	8	194	29	17	29	22	1.97
52663949--52664183	50	4.7	50	82	4	303	25	17	27	29	1.97
52669877--52669918	2	21.0	2	85	0	57	0	42	0	57	0.99
52669872--52669918	10	4.9	10	78	19	55	0	40	0	59	0.97
52669873--52669918	12	4.0	12	88	5	69	0	41	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52669877--52669909	16	2.1	16	100	0	66	0	42	0	57	0.98
52687631--52687676	25	1.9	23	86	8	65	28	0	8	63	1.24
52690988--52691353	180	2.0	180	95	0	651	41	13	11	34	1.80
52700452--52700559	44	2.4	44	85	3	135	30	22	13	33	1.93
52707808--52707915	44	2.4	44	85	3	135	29	23	12	34	1.92
52709835--52709861	14	1.9	14	100	0	54	22	7	7	62	1.46
52714930--52715064	43	3.1	43	65	21	118	10	33	6	49	1.63
52714945--52715081	44	3.1	44	66	14	129	8	32	8	50	1.63
52714925--52715101	87	2.0	87	100	0	354	9	33	6	50	1.60
52720258--52720392	55	2.5	55	80	2	146	16	25	30	28	1.96
52722209--52722302	46	2.1	45	86	4	127	28	29	21	20	1.98
52729670--52729757	46	1.9	46	90	0	131	27	27	22	22	1.99
52750419--52750876	142	3.2	141	80	4	510	24	16	22	36	1.94
52750422--52750881	213	2.2	213	80	2	503	23	16	23	36	1.94
52750422--52750881	71	6.5	71	79	1	445	23	16	23	36	1.94
52755570--52755609	12	3.2	12	89	3	53	12	5	2	80	0.98
52758616--52758896	48	5.9	48	96	0	508	34	6	28	30	1.83
52759037--52759139	37	2.8	37	96	0	188	23	20	32	24	1.98
52760733--52760766	17	2.0	17	88	0	50	32	5	0	61	1.20
52761057--52761112	26	2.1	27	86	3	78	30	5	0	64	1.16
52761365--52761427	25	2.5	24	84	10	72	30	1	7	60	1.35
52761389--52761441	25	2.2	24	82	3	61	30	7	5	56	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52764668--52764718	25	2.0	25	92	0	84	37	17	5	39	1.74
52769336--52769386	25	2.0	25	92	0	84	37	17	5	39	1.74
52781707--52781758	27	2.0	27	85	7	72	63	5	0	30	1.18
52781736--52781787	22	2.4	22	84	9	63	71	9	0	19	1.13
52781740--52781787	21	2.3	20	82	10	53	72	10	0	16	1.10
52783999--52784102	52	2.0	52	100	0	208	44	13	17	25	1.85
52792972--52793031	29	2.1	29	81	12	70	60	1	1	36	1.17
52803060--52803124	14	4.4	14	74	18	51	56	9	7	26	1.57
52808276--52808317	20	2.2	19	87	12	59	38	0	4	57	1.20
52809431--52809517	40	2.2	40	81	4	95	35	8	13	42	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250