genome.fa.s9.2.7.7.80.10.50.1000.91.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  91  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29481439--29481676	27	8.9	27	82	3	144	22	17	18	41	1.90
29481438--29481676	81	3.0	81	80	6	218	22	17	18	41	1.90
29481466--29481679	54	4.0	54	81	4	227	21	17	18	41	1.90
29481465--29481683	27	8.1	27	84	1	206	21	17	19	41	1.91
29482548--29482915	27	13.7	27	86	0	477	24	13	21	41	1.88
29483270--29483329	18	3.3	18	83	0	84	23	18	16	41	1.90
29492644--29493017	79	4.7	80	90	3	537	22	22	28	25	1.99
29492644--29493017	39	9.5	40	89	3	537	22	22	28	25	1.99
29492644--29492982	118	2.9	118	95	1	581	22	22	29	26	1.99
29500266--29500434	47	3.6	47	91	0	248	36	8	28	26	1.86
29500266--29500864	141	4.3	140	85	7	814	34	11	28	25	1.90
29500400--29500466	32	2.1	32	97	0	125	35	11	25	26	1.91
29500432--29500864	47	9.2	47	93	0	679	33	11	29	25	1.91
29500464--29500539	22	3.3	22	67	22	66	32	13	28	25	1.93
29500464--29500586	22	5.3	22	64	24	65	32	12	29	26	1.92
29500700--29500774	22	3.3	22	67	17	62	34	13	28	24	1.93
29500838--29500956	46	2.6	46	91	0	202	33	10	31	24	1.88
29504632--29504859	46	5.0	46	91	1	323	39	14	23	21	1.91
29505120--29505166	25	2.0	25	83	8	62	53	4	14	27	1.60
29505505--29505548	22	2.0	22	95	0	79	25	9	40	25	1.84
29512521--29512549	8	3.6	8	100	0	58	27	0	34	37	1.57
29527807--29527831	13	1.9	13	100	0	50	40	24	4	32	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29535124--29535262	40	3.5	40	85	2	147	25	28	20	25	1.99
29535159--29535258	39	2.5	40	85	1	130	27	29	19	25	1.98
29540364--29540463	39	2.5	40	81	1	121	26	27	21	26	1.99
29540336--29540523	40	4.7	41	74	10	165	25	25	22	26	2.00
29555633--29555670	16	2.4	15	91	8	58	47	13	21	18	1.82
29555641--29555683	16	2.7	16	92	0	68	46	16	23	13	1.83
29555898--29556038	28	5.0	29	85	1	171	26	14	29	29	1.95
29555898--29556033	57	2.4	58	87	3	197	25	14	30	28	1.95
29560797--29561000	42	4.8	42	86	1	264	30	22	14	32	1.94
29566407--29566436	10	3.0	10	95	0	51	26	40	13	20	1.89
29567234--29567391	42	3.7	42	82	0	172	29	21	16	32	1.95
29569339--29569422	42	2.0	42	92	0	141	23	19	32	25	1.97
29569694--29569775	28	2.9	29	85	5	114	25	15	31	26	1.96
29577140--29577178	16	2.4	16	91	0	60	43	17	20	17	1.88
29577382--29577463	28	2.9	29	81	5	96	23	15	34	26	1.95
29581089--29581251	39	4.2	39	94	2	283	28	24	17	28	1.98
29587573--29587617	22	2.0	22	83	8	56	40	24	6	28	1.80
29590848--29590988	40	3.5	40	89	2	214	26	26	22	24	2.00
29592867--29592985	43	2.8	42	79	2	139	28	25	15	30	1.96
29595549--29595580	16	2.0	16	93	0	55	28	6	15	50	1.68
29597578--29597738	38	4.0	38	72	15	117	29	24	14	31	1.95
29598150--29598203	28	1.9	29	85	14	78	24	18	11	46	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29599983--29600024	15	2.8	15	88	0	66	52	14	16	16	1.75
29603230--29603321	47	2.0	47	88	0	139	34	23	14	27	1.93
29612430--29612601	93	1.8	93	93	2	301	29	30	19	20	1.97
29612426--29612596	46	3.7	45	80	10	202	29	29	19	21	1.98
29612427--29612616	46	4.1	44	71	21	122	30	28	19	21	1.98
29617003--29617138	44	3.1	44	100	0	272	34	16	0	49	1.46
29623156--29623213	29	2.0	29	96	0	107	31	18	13	36	1.90
29623160--29623228	29	2.4	28	88	9	95	28	17	13	40	1.87
29628447--29628620	46	3.8	45	81	12	210	28	28	21	21	1.98
29628455--29628625	92	1.8	93	92	1	290	28	29	21	21	1.98
29631005--29631093	30	3.0	30	80	8	101	57	15	16	10	1.65
29631005--29631084	15	5.4	15	80	7	92	58	13	17	10	1.62
29631016--29631093	15	5.2	15	78	9	79	56	15	16	11	1.67
29637595--29637631	19	1.9	19	88	0	56	45	0	2	51	1.15
29637604--29637643	19	2.1	19	85	4	53	42	0	5	52	1.23
29638696--29638735	7	5.7	7	90	0	62	30	35	0	35	1.58
29638692--29638742	21	2.4	21	80	0	66	29	29	0	41	1.57
29638695--29638742	14	3.4	14	77	11	53	29	31	0	39	1.57
29638765--29638803	20	2.0	20	85	10	53	17	12	2	66	1.35
29642392--29642485	48	2.0	48	87	8	138	40	26	11	21	1.87
29644906--29644999	48	2.0	48	85	12	131	40	27	11	20	1.87
29647555--29647652	27	3.5	28	87	2	126	31	27	13	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29675964--29676117	47	3.3	47	93	0	272	29	29	7	33	1.84
29677968--29677992	13	1.9	13	100	0	50	36	16	16	32	1.90
29682982--29683137	68	2.2	69	77	13	151	20	26	16	36	1.94
29689998--29690037	13	3.1	13	88	0	62	15	30	32	22	1.94
29701220--29701284	20	3.2	20	68	8	60	18	24	16	40	1.91
29701223--29701384	80	2.0	80	85	0	216	17	27	17	37	1.93
29701229--29701391	40	4.1	40	84	0	191	17	26	17	37	1.93
29701323--29701388	20	3.3	20	70	8	53	18	34	16	30	1.93
29716264--29716487	104	2.2	104	93	1	378	17	19	31	31	1.95
29716406--29716557	71	2.1	72	92	1	252	23	17	29	30	1.97
29723816--29724039	104	2.2	104	93	1	378	17	19	31	31	1.95
29723958--29724109	71	2.1	72	92	1	252	23	17	29	30	1.97
29730038--29730221	40	4.6	40	84	3	219	18	30	16	34	1.93
29730038--29730179	20	7.1	20	63	9	65	19	31	16	32	1.94
29732007--29732163	27	5.8	27	93	0	224	30	24	7	38	1.82
29732007--29732163	81	1.9	81	92	0	260	30	24	7	38	1.82
29732151--29732394	27	9.0	27	77	7	154	40	18	9	32	1.82
29731994--29732171	81	2.2	81	85	0	257	34	23	6	35	1.81
29731994--29732298	81	3.8	81	75	2	218	36	21	7	34	1.82
29732156--29732386	54	4.2	55	74	10	197	41	17	9	32	1.81
29732424--29732484	27	2.3	27	88	0	86	37	19	24	18	1.94
29732436--29732511	27	2.8	27	88	4	100	32	21	22	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29733319--29733467	52	2.9	52	92	2	248	27	24	22	26	2.00
29733319--29733467	26	5.8	26	87	0	212	27	24	22	26	2.00
29733611--29733691	42	1.9	42	85	5	110	30	13	20	34	1.92
29733726--29733800	31	2.4	31	90	0	123	30	17	24	28	1.97
29734622--29734670	6	8.0	6	84	13	64	16	0	2	81	0.78
29738311--29738337	13	2.1	13	100	0	54	48	22	0	29	1.51
29741084--29741124	21	2.0	21	85	9	57	36	17	0	46	1.48
29746679--29746765	44	2.0	44	86	0	120	32	17	9	41	1.81
29747684--29747710	11	2.5	11	100	0	54	66	0	7	25	1.17
29750495--29750535	19	2.2	19	90	0	64	65	2	0	31	1.05
29753434--29753534	45	2.2	45	85	0	139	26	18	8	45	1.79
29755503--29755718	108	2.0	108	99	0	423	41	17	17	23	1.90
29763762--29764100	39	8.6	39	86	1	453	20	23	28	28	1.99
29763756--29764123	157	2.3	157	86	0	504	20	22	27	29	1.99
29763774--29764125	118	3.0	118	91	0	569	20	23	27	28	1.99
29766311--29766589	48	5.8	48	84	0	335	23	16	30	28	1.96
29768954--29769124	46	3.7	46	79	13	172	22	28	20	29	1.98
29768916--29769127	94	2.3	92	82	10	247	23	28	19	27	1.98
29776864--29777154	48	6.1	48	83	4	365	25	16	28	29	1.96
29776864--29777131	144	1.9	144	88	1	403	25	16	28	29	1.97
29776864--29777187	96	3.4	93	79	8	339	25	16	28	29	1.96
29776873--29777187	144	2.2	142	82	4	382	26	15	28	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29779917--29779956	21	2.0	20	90	5	62	35	0	22	42	1.54
29779922--29779964	21	2.1	21	83	12	54	32	2	20	44	1.65
29781705--29781743	21	1.9	20	89	5	60	15	23	41	20	1.90
29782758--29782799	21	2.0	21	100	0	84	38	14	9	38	1.78
29795365--29795485	44	2.7	44	84	6	147	18	15	30	35	1.92
29796211--29796291	40	2.0	40	95	0	144	25	19	22	32	1.98
29798206--29798376	93	1.8	93	88	2	263	29	28	19	22	1.98
29798197--29798372	46	3.8	46	73	15	173	30	27	19	22	1.98
29802192--29802275	15	5.6	15	85	0	105	14	16	14	54	1.71
29805438--29805498	30	2.0	30	87	6	88	36	8	26	29	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250