genome.fa.s9.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  140  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45325847--45325900	24	2.3	23	90	6	90	29	14	3	51	1.60
45325853--45325900	24	2.0	24	100	0	96	29	12	4	54	1.56
45328004--45328071	16	4.2	16	79	17	63	44	2	1	51	1.25
45330940--45330993	20	2.8	18	73	15	54	64	5	7	22	1.40
45331886--45331927	19	2.2	20	82	4	50	52	2	2	42	1.27
45332804--45332847	21	2.0	22	86	4	63	9	18	0	72	1.10
45336744--45336776	17	2.0	17	94	5	59	27	0	6	66	1.15
45339759--45339826	33	2.0	34	88	2	102	35	20	10	33	1.87
45339759--45339828	34	2.1	34	86	5	97	35	20	11	32	1.88
45346286--45346337	21	2.3	23	80	9	63	1	34	0	63	1.06
45346610--45346651	17	2.5	17	100	0	84	16	11	14	57	1.66
45351316--45351389	34	2.2	34	95	2	132	52	0	9	37	1.34
45358102--45358158	28	2.0	28	86	0	78	40	14	3	42	1.62
45358318--45358344	6	4.5	6	100	0	54	48	14	18	18	1.82
45359639--45359725	3	30.3	3	68	21	53	63	4	1	31	1.22
45359659--45359725	19	3.5	19	72	25	52	65	4	1	28	1.21
45361321--45361368	24	2.0	24	91	4	78	31	16	6	45	1.72
45374602--45374689	44	2.0	46	82	8	110	37	22	4	35	1.75
45376153--45376182	15	1.9	16	93	6	53	56	0	0	43	0.99
45376181--45376225	19	2.4	19	88	0	72	33	0	6	60	1.23
45376850--45376982	70	1.9	70	87	4	200	30	11	14	43	1.80
45384703--45384928	40	5.7	40	88	4	280	26	22	26	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45394276--45394380	20	5.0	21	78	13	101	49	20	16	13	1.79
45395564--45395601	18	2.1	19	90	5	60	71	2	7	18	1.23
45398842--45398950	22	5.0	22	82	4	94	21	24	12	41	1.88
45404339--45404389	19	2.7	19	84	0	66	21	13	29	35	1.92
45406532--45406602	35	2.0	35	97	0	133	18	14	25	42	1.87
45409608--45409640	17	1.9	17	93	0	57	15	15	12	57	1.65
45415091--45415269	92	1.9	92	91	0	295	20	22	13	43	1.86
45415086--45415265	46	3.9	46	87	0	252	20	23	13	42	1.87
45417676--45417743	30	2.3	30	82	5	75	27	17	4	50	1.65
45421108--45421164	29	2.0	29	92	0	96	26	10	28	35	1.89
45422188--45422228	20	2.0	20	86	9	57	53	0	2	43	1.13
45422908--45422948	20	2.0	20	86	9	57	53	0	2	43	1.13
45421813--45423258	720	2.0	720	99	0	2883	43	8	8	40	1.65
45423740--45423782	20	2.2	20	86	0	59	58	2	4	34	1.32
45428470--45428661	93	2.1	93	97	0	366	27	7	18	45	1.77
45430368--45430450	43	1.9	43	82	4	105	26	24	24	25	2.00
45450091--45450138	15	3.2	15	74	8	53	75	2	22	0	0.91
45450234--45450260	6	4.5	6	100	0	54	33	0	33	33	1.58
45450223--45450272	18	2.8	18	71	0	55	52	0	26	22	1.48
45452103--45452149	23	2.0	23	100	0	94	21	23	17	38	1.93
45453069--45453288	48	4.6	48	75	5	185	26	17	27	29	1.97
45453069--45453287	96	2.3	96	79	3	226	26	16	27	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45462661--45462911	79	3.2	79	82	7	269	26	20	26	26	1.99
45462657--45462878	40	5.6	40	85	5	281	24	21	27	26	1.99
45462661--45462911	119	2.1	119	81	7	278	26	20	26	26	1.99
45465758--45465806	21	2.4	20	83	12	64	42	8	26	22	1.81
45472751--45472820	19	3.5	20	90	7	108	11	24	21	42	1.85
45472992--45473039	21	2.4	19	89	6	69	43	8	25	22	1.81
45475447--45475621	46	3.8	46	77	10	194	29	28	20	22	1.98
45475454--45475626	93	1.9	93	93	0	301	28	28	20	22	1.98
45475682--45475754	38	1.9	38	94	0	128	26	23	13	36	1.92
45482369--45482430	25	2.5	25	97	0	115	61	3	1	33	1.22
45485497--45485533	9	4.1	9	92	0	65	45	13	10	29	1.77
45485917--45485954	19	2.0	20	84	5	51	26	26	0	47	1.52
45497757--45497841	41	2.1	41	90	0	134	24	20	20	35	1.96
45502014--45502039	3	8.7	3	100	0	52	69	0	0	30	0.89
45503873--45504821	493	1.9	493	91	0	1531	38	20	14	26	1.91
45504942--45505040	40	2.5	39	77	3	110	33	34	13	19	1.90
45512990--45513050	30	2.0	30	87	0	86	31	22	6	39	1.80
45522351--45522398	24	2.0	25	91	4	80	52	2	25	20	1.58
45531286--45531321	18	2.0	18	88	0	54	52	0	22	25	1.47
45541912--45542009	44	2.3	42	86	8	135	23	19	25	31	1.98
45548827--45548860	17	1.9	18	94	5	61	23	44	20	11	1.84
45556926--45557087	47	3.5	47	87	4	177	49	12	9	29	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45556978--45557068	27	3.6	27	67	24	81	48	12	9	29	1.73
45558423--45558469	14	3.1	15	75	9	51	70	4	2	23	1.16
45559168--45559385	88	2.4	88	80	7	226	36	22	8	33	1.85
45559388--45559476	10	9.6	9	70	11	63	61	1	1	35	1.11
45559394--45559451	19	3.0	19	87	2	80	60	0	0	39	0.97
45559389--45559469	28	2.9	27	80	5	81	61	0	1	37	1.04
45559417--45559476	28	2.2	28	84	3	77	61	1	1	35	1.16
45559659--45559764	30	3.7	27	73	14	86	30	3	3	62	1.30
45559676--45559780	10	10.6	10	73	9	54	29	2	2	64	1.22
45559638--45559764	58	2.2	60	85	5	170	28	4	3	62	1.33
45559695--45559787	19	4.8	20	75	15	79	23	3	3	69	1.17
45559693--45559804	10	11.5	10	71	12	72	25	3	2	68	1.18
45559704--45559804	40	2.5	40	82	6	116	24	3	2	68	1.21
45559696--45559804	19	5.6	19	71	9	69	24	3	2	68	1.19
45563683--45563727	23	2.0	23	86	4	65	31	15	4	48	1.65
45564087--45564134	15	3.2	15	87	0	69	62	2	6	29	1.31
45565417--45565488	34	2.1	34	97	0	135	23	27	20	27	1.99
45572607--45572706	35	2.9	34	89	3	137	16	14	28	42	1.86
45572621--45572713	35	2.7	35	91	0	141	18	13	26	40	1.88
45572818--45572892	36	2.1	36	92	0	123	29	2	22	45	1.66
45573032--45573148	35	3.3	35	86	3	155	17	11	28	43	1.83
45575770--45575803	17	1.9	18	94	5	61	14	0	29	55	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45579265--45579358	36	2.6	36	88	5	129	18	13	27	40	1.88
45579251--45579367	36	3.3	35	84	5	128	17	11	28	42	1.84
45579464--45579538	36	2.1	36	92	0	123	29	2	22	45	1.66
45579677--45579792	35	3.3	34	86	3	151	17	11	28	43	1.83
45585929--45586028	35	2.9	34	89	3	137	16	14	28	42	1.86
45585943--45586035	35	2.7	35	91	0	141	18	13	26	40	1.88
45586140--45586214	36	2.1	36	92	0	123	29	2	22	45	1.66
45586354--45586470	35	3.3	35	86	3	155	17	11	28	43	1.83
45589090--45589123	17	1.9	18	94	5	61	14	0	29	55	1.40
45594015--45594113	23	4.3	23	93	0	162	29	27	21	22	1.99
45600373--45600471	23	4.3	23	93	0	162	29	27	21	22	1.99
45603303--45603342	19	2.0	21	85	9	57	25	30	5	40	1.77
45619972--45620137	43	3.9	43	81	5	167	25	15	26	31	1.96
45622476--45622510	18	1.9	19	88	11	56	31	25	2	40	1.70
45629269--45629401	49	2.7	50	82	4	162	29	20	27	22	1.98
45636860--45637028	48	3.6	48	79	4	173	28	19	27	24	1.99
45637049--45637167	49	2.4	49	83	4	141	31	19	26	22	1.98
45640296--45640419	43	2.9	43	80	4	144	22	16	28	33	1.95
45647621--45647742	43	2.9	42	80	2	154	31	14	24	29	1.95
45647828--45647865	20	1.9	20	88	0	58	28	2	34	34	1.71
45651851--45651912	19	3.2	19	68	20	56	20	16	12	50	1.78
45652283--45652323	17	2.4	17	95	0	73	51	0	9	39	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45652624--45653025	91	4.4	91	87	5	583	30	9	10	49	1.70
45652637--45653030	188	2.1	188	91	2	634	30	9	10	48	1.70
45655641--45655704	32	2.0	31	82	11	76	20	3	17	59	1.51
45658834--45659016	40	4.6	39	81	10	194	23	22	28	25	1.99
45668473--45668551	25	3.3	25	61	10	65	32	5	29	32	1.79
45668458--45668882	47	9.1	47	95	0	737	31	9	30	28	1.88
45669001--45669079	37	2.1	37	88	4	115	25	18	30	25	1.98
45671137--45671321	40	4.6	39	84	5	212	23	22	28	25	2.00
45671137--45671319	79	2.3	81	84	7	232	24	22	27	25	2.00
45671138--45671344	79	2.6	79	78	12	228	25	22	27	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250