genome.fa.s9.2.7.7.80.10.50.1000.130.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  130  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42008039--42008257	47	4.7	47	93	0	384	32	10	28	27	1.90
42010068--42010250	40	4.6	40	81	9	196	24	22	28	25	1.99
42010068--42010283	79	2.7	78	77	13	217	25	21	27	25	1.99
42011634--42011896	47	5.6	47	92	0	436	33	8	30	27	1.87
42013855--42013967	38	3.0	38	86	0	154	28	16	30	24	1.97
42013855--42013997	38	3.8	38	83	1	126	27	15	29	27	1.96
42014025--42014215	40	4.8	40	93	0	301	20	23	29	26	1.99
42014384--42014436	25	2.1	25	86	6	72	30	13	30	26	1.94
42014421--42014519	28	3.5	28	72	10	103	18	19	35	27	1.95
42017577--42017943	47	7.8	47	93	0	626	32	10	29	27	1.89
42017577--42017943	94	3.9	94	97	0	698	32	10	29	27	1.89
42018826--42019088	47	5.6	47	91	0	427	33	9	30	27	1.88
42028956--42029001	20	2.5	19	83	13	60	69	4	4	21	1.24
42036670--42036818	48	3.1	48	88	0	217	26	18	26	28	1.98
42036670--42036903	96	2.5	94	80	7	246	26	20	25	27	1.99
42040089--42040146	25	2.2	26	84	6	73	34	17	12	36	1.87
42040089--42040511	27	15.7	27	78	4	282	38	20	9	30	1.85
42041874--42041981	43	2.5	43	89	0	162	29	19	25	25	1.98
42042309--42042342	17	2.0	17	100	0	68	52	11	5	29	1.61
42043608--42043719	41	2.7	41	90	0	170	25	22	27	25	2.00
42046944--42047015	27	2.7	27	82	8	85	41	18	8	31	1.80
42046997--42047395	27	14.7	27	76	6	274	41	20	8	29	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42048498--42048699	41	4.9	41	86	0	296	22	20	29	28	1.98
42049111--42049158	22	2.2	22	84	0	60	10	22	22	43	1.84
42065258--42065299	20	2.1	20	82	8	50	69	2	0	28	1.01
42066839--42067006	47	3.6	47	87	3	243	29	28	17	24	1.97
42069796--42069837	20	2.1	20	82	8	50	69	2	0	28	1.01
42071373--42071540	47	3.6	47	87	3	243	29	28	17	24	1.97
42074330--42074371	20	2.1	20	82	8	50	69	2	0	28	1.01
42075910--42076077	47	3.6	47	87	3	243	29	28	17	24	1.97
42078874--42078915	20	2.1	20	82	8	50	69	2	0	28	1.01
42080456--42080623	47	3.6	47	87	3	243	29	28	17	24	1.97
42083412--42083453	20	2.1	20	82	8	50	69	2	0	28	1.01
42084988--42085155	47	3.6	47	87	3	243	29	28	17	24	1.97
42091949--42092138	48	4.0	48	93	0	308	25	20	26	27	1.99
42091956--42092162	48	4.3	48	86	2	182	28	19	25	26	1.99
42096075--42096172	26	3.8	26	93	1	162	26	22	24	26	2.00
42096222--42096278	20	2.9	21	87	10	77	31	19	8	40	1.82
42097651--42097683	16	2.0	17	88	5	50	75	0	24	0	0.80
42104355--42104426	26	2.8	26	95	2	128	23	23	25	27	2.00
42104476--42104550	20	3.8	20	87	6	102	33	18	10	37	1.86
42104578--42104625	25	1.9	25	86	0	69	27	14	22	35	1.93
42107020--42107132	54	2.1	53	80	9	122	26	23	30	20	1.98
42107382--42107425	17	2.6	17	78	3	54	54	13	11	20	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42115715--42115923	40	5.5	40	77	14	210	23	22	28	24	1.99
42115709--42115923	71	2.9	73	83	9	251	24	22	28	24	1.99
42126361--42126405	22	2.0	22	91	8	74	28	0	20	51	1.48
42127736--42127773	17	2.3	17	83	16	53	5	7	2	84	0.86
42127972--42128076	50	2.1	50	94	0	192	48	15	15	20	1.81
42128191--42128237	13	3.6	13	80	8	51	70	2	2	25	1.10
42130090--42130210	60	2.0	60	98	0	233	33	24	21	19	1.97
42132480--42132698	46	4.7	46	82	7	273	23	19	26	30	1.98
42132480--42132696	93	2.4	91	84	6	267	23	19	27	29	1.98
42138498--42138669	46	3.7	46	79	11	208	22	20	27	29	1.99
42138495--42138664	93	1.8	92	93	1	295	21	21	28	28	1.99
42160911--42160961	26	2.0	26	100	0	102	19	21	7	50	1.72
42162625--42162658	10	3.4	10	88	11	52	82	0	2	14	0.79
42167848--42168005	68	2.3	68	76	11	151	22	27	14	36	1.93
42175328--42175485	68	2.3	68	77	13	153	20	27	15	35	1.94
42187344--42187381	14	2.9	13	81	11	51	18	13	10	57	1.63
42206189--42206294	40	2.6	40	81	10	117	24	20	27	27	1.99
42214431--42214590	41	3.9	40	77	11	155	21	23	28	26	1.99
42219741--42219778	18	2.1	18	100	0	76	31	15	10	42	1.81
42220093--42220119	13	2.1	13	100	0	54	37	0	14	48	1.45
42220308--42220349	21	2.0	21	85	0	57	35	4	4	54	1.42
42220933--42220988	7	8.3	7	75	13	55	28	12	1	57	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42221679--42221918	132	1.8	132	87	0	354	36	20	17	24	1.94
42222219--42222263	3	14.7	3	86	4	63	66	2	0	31	1.04
42222899--42222923	3	8.3	3	100	0	50	68	0	0	32	0.90
42223823--42223892	26	2.6	27	90	6	115	17	28	0	54	1.43
42225134--42225308	89	2.0	89	94	2	307	24	20	22	33	1.97
42225313--42225498	90	2.1	87	79	9	203	30	21	15	32	1.94
42229132--42229299	47	3.6	47	90	0	255	27	30	8	33	1.86
42229524--42229615	39	2.3	39	85	5	114	26	27	21	25	2.00
42229524--42229668	40	3.7	40	78	10	118	26	26	21	24	1.99
42243015--42243232	40	5.5	40	88	2	298	24	28	24	22	1.99
42245129--42245370	132	1.8	132	83	3	326	35	21	16	26	1.94
42245642--42245689	15	3.2	15	91	5	62	66	10	0	22	1.22
42245654--42245699	3	15.0	3	86	4	65	65	4	0	30	1.12
42247265--42247335	26	2.6	27	86	8	108	15	26	0	57	1.38
42247272--42247330	26	2.2	27	96	3	111	16	28	0	54	1.43
42248681--42248737	30	2.0	30	86	6	82	28	3	5	63	1.33
42249560--42249620	30	2.0	30	87	0	86	16	3	21	59	1.51
42249762--42249794	13	2.6	13	90	4	50	78	0	18	3	0.87
42251955--42251981	3	9.0	3	100	0	54	66	0	0	33	0.92
42256345--42256522	27	6.6	27	84	3	205	29	28	15	26	1.96
42256366--42256521	82	1.9	81	88	3	233	29	28	15	26	1.96
42264555--42264817	40	6.6	40	87	3	316	26	28	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42284524--42284698	46	3.8	46	78	13	205	29	29	21	20	1.98
42284531--42284702	93	1.8	93	94	0	308	28	29	21	20	1.98
42296242--42296269	4	7.0	4	100	0	56	25	0	0	75	0.81
42298055--42298226	93	1.8	93	92	2	292	29	29	19	20	1.97
42298048--42298226	46	3.8	49	78	14	198	30	29	19	20	1.97
42305376--42305461	43	2.0	43	100	0	172	48	9	13	27	1.73
42323726--42323837	48	2.3	48	85	1	143	33	16	12	37	1.87
42328174--42328320	48	3.1	48	81	0	195	26	30	17	25	1.97
42340164--42340202	13	3.0	13	100	0	78	15	30	30	23	1.95
42346746--42346817	34	2.1	34	87	5	101	27	22	19	30	1.98
42348481--42348523	17	2.5	17	78	14	52	20	2	18	58	1.50
42355523--42355549	6	4.5	6	100	0	54	66	33	0	0	0.92
42362125--42362165	5	8.2	5	100	0	82	39	19	19	21	1.93
42370821--42370892	36	2.0	36	100	0	144	30	22	19	27	1.98
42371128--42371161	16	2.1	16	88	0	50	76	5	5	11	1.14
42385485--42385514	12	2.5	12	88	0	51	20	50	0	30	1.49
42398838--42398984	44	3.4	42	81	7	145	23	15	26	34	1.94
42398846--42398984	42	3.2	42	78	7	129	23	16	26	33	1.96
42407824--42407908	41	2.0	42	88	2	127	30	12	22	34	1.92
42409621--42409763	40	3.5	40	85	4	180	25	24	27	23	2.00
42422832--42422878	24	2.0	24	83	8	60	21	6	36	36	1.79
42426750--42427012	40	6.6	40	86	3	307	25	20	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42426789--42427047	80	3.3	80	83	3	229	26	20	27	25	1.99
42429740--42430045	47	6.5	47	73	13	202	23	29	18	28	1.98
42436075--42436351	102	2.7	102	96	0	500	22	29	14	33	1.94
42444828--42445307	149	3.2	146	81	8	508	41	5	10	42	1.61
42450120--42450342	47	4.8	46	80	9	231	26	20	30	22	1.98
42450120--42450342	46	4.7	47	80	9	210	26	20	30	22	1.98
42455920--42456080	46	3.5	46	79	9	148	29	19	27	23	1.98
42458731--42458806	27	2.8	27	81	2	98	23	30	11	34	1.91
42470303--42470381	37	2.1	37	88	4	115	25	30	18	25	1.98
42470500--42471019	47	10.9	47	94	2	887	29	29	8	32	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250