genome.fa.s9.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  116  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37287337--37287392	28	2.0	28	100	0	112	42	0	14	42	1.45
37287592--37287632	17	2.4	17	79	0	55	46	14	14	24	1.82
37288883--37288959	33	2.3	34	84	6	95	31	22	22	24	1.98
37298265--37298313	20	2.5	20	72	0	53	22	28	16	32	1.95
37309399--37309439	20	2.0	21	90	9	66	39	0	7	53	1.29
37309839--37309898	26	2.3	26	82	8	68	48	1	1	48	1.21
37309919--37309954	19	1.9	18	88	5	54	58	0	0	41	0.98
37321482--37321517	3	12.0	3	87	0	54	2	27	0	69	1.02
37322684--37322749	13	5.1	13	78	14	82	33	7	22	36	1.83
37323505--37323544	21	1.9	21	84	0	53	45	2	0	52	1.14
37323606--37323680	38	2.0	38	97	0	141	37	4	4	54	1.38
37323675--37323709	19	1.9	17	88	11	52	42	5	5	45	1.51
37325807--37326013	53	3.8	53	77	3	207	38	17	23	20	1.93
37328106--37328163	28	2.0	29	87	9	84	15	41	22	20	1.90
37333356--37333389	17	2.0	17	100	0	68	47	5	11	35	1.65
37338404--37338511	26	4.2	26	93	0	189	32	7	24	36	1.83
37340108--37340248	27	5.2	26	83	6	174	17	22	24	36	1.95
37340108--37340248	54	2.6	53	90	2	219	17	22	24	36	1.95
37340108--37340266	27	5.9	26	82	7	140	18	23	22	35	1.95
37342496--37342542	20	2.3	21	82	10	62	34	17	6	42	1.74
37349185--37349270	39	2.2	39	91	0	136	29	10	15	45	1.79
37349287--37349409	50	2.4	50	87	2	183	34	15	13	36	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37353289--37353482	76	2.6	76	83	1	219	22	18	22	37	1.94
37357576--37357613	19	2.0	20	85	15	53	36	0	23	39	1.55
37367456--37367571	59	2.0	60	84	5	155	48	10	16	25	1.77
37367471--37367556	28	3.0	28	70	14	68	51	9	17	22	1.73
37369792--37369836	23	2.0	22	87	12	65	42	0	2	55	1.12
37369801--37369842	19	2.2	20	87	12	61	47	0	0	52	1.00
37370328--37370369	16	2.6	16	85	7	50	66	2	0	30	1.04
37373719--37373770	12	4.3	12	78	7	61	71	3	1	23	1.13
37386529--37386567	5	7.6	5	82	5	51	38	2	17	41	1.64
37387135--37387225	25	3.7	25	70	12	71	21	27	19	30	1.98
37392773--37392866	42	2.2	42	86	0	125	35	14	21	28	1.93
37395975--37396012	20	1.9	20	84	10	51	42	13	23	21	1.88
37397910--37398229	46	7.0	46	93	0	507	38	14	23	22	1.92
37400327--37400455	41	3.2	40	84	2	150	19	20	7	52	1.70
37401969--37402100	68	1.9	69	82	10	164	42	7	4	45	1.53
37403012--37403067	21	2.7	21	83	5	69	32	14	28	25	1.94
37403729--37403788	30	2.0	30	96	0	111	33	15	20	31	1.93
37407189--37407233	20	2.3	20	84	3	56	31	17	24	26	1.97
37409584--37409657	18	4.1	18	74	10	69	31	9	14	44	1.77
37409679--37409723	18	2.5	18	81	0	54	40	8	13	37	1.76
37409695--37409737	18	2.4	18	80	0	50	37	13	16	32	1.88
37409664--37409746	36	2.3	36	81	4	87	37	10	13	38	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37416367--37416542	46	3.8	46	80	12	216	21	21	28	28	1.98
37416363--37416535	93	1.9	93	93	0	301	21	21	28	27	1.99
37420355--37420574	103	2.2	102	90	4	338	18	19	31	30	1.96
37420459--37420641	69	2.6	66	81	14	197	21	17	30	30	1.96
37420601--37420653	26	2.0	26	92	0	88	16	20	33	28	1.95
37424329--37424380	27	1.9	27	96	0	95	13	25	32	28	1.93
37424253--37424474	103	2.2	103	93	1	374	18	19	31	31	1.95
37424394--37424544	71	2.1	71	91	2	241	23	17	29	30	1.97
37428278--37428323	23	2.0	23	86	0	65	36	10	13	39	1.79
37428490--37428519	13	2.3	13	94	0	51	30	6	23	40	1.80
37431161--37431201	21	2.0	20	95	4	73	26	0	24	48	1.51
37448181--37448357	48	3.7	48	87	1	230	23	25	22	29	1.99
37448184--37448360	96	1.8	96	86	4	259	23	25	22	28	1.99
37452735--37452812	40	2.0	40	87	5	113	35	26	12	24	1.92
37453232--37453288	28	2.0	29	82	3	71	31	24	3	40	1.72
37455936--37455960	9	2.8	9	100	0	50	20	8	24	48	1.76
37457855--37457895	21	2.0	20	95	4	73	26	0	24	48	1.51
37463851--37463880	13	2.3	13	94	0	51	40	23	6	30	1.80
37464047--37464092	23	2.0	23	86	0	65	39	13	10	36	1.79
37467902--37468126	105	2.2	105	92	2	373	31	31	19	17	1.95
37468455--37468518	30	2.2	29	81	10	76	29	28	6	35	1.82
37468462--37468518	30	1.9	30	85	3	80	29	24	7	38	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37474933--37474992	29	2.1	29	100	0	120	38	13	26	21	1.90
37477873--37477923	26	2.0	26	96	0	93	29	35	23	11	1.90
37477779--37478001	103	2.2	104	92	2	369	31	31	18	17	1.95
37478328--37478391	30	2.2	29	81	10	76	29	28	6	35	1.82
37478335--37478391	30	1.9	30	85	3	80	29	24	7	38	1.82
37480067--37480228	35	4.7	35	74	6	132	29	16	24	29	1.97
37482489--37482523	14	2.5	14	100	0	70	74	5	5	14	1.19
37492445--37492485	21	2.0	21	85	0	55	14	14	39	31	1.87
37501151--37501319	46	3.6	45	78	7	178	22	28	20	28	1.98
37503896--37504068	46	3.8	44	78	10	168	21	20	28	29	1.98
37503889--37504060	93	1.8	93	88	0	263	20	20	29	29	1.98
37507022--37507104	15	5.7	15	79	8	82	12	15	12	60	1.60
37507018--37507104	45	2.0	43	84	4	111	11	14	14	58	1.63
37509452--37509627	46	3.8	44	77	10	174	21	20	28	29	1.98
37509448--37509619	93	1.8	93	89	0	272	21	20	29	28	1.98
37518586--37518619	15	2.4	14	90	9	52	91	0	8	0	0.43
37530636--37530731	42	2.3	43	83	5	124	28	19	23	28	1.99
37530637--37530749	42	2.7	42	78	12	115	25	21	25	27	1.99
37537873--37537963	29	3.2	29	86	6	116	29	31	13	25	1.93
37542016--37542174	43	3.8	42	72	16	139	23	18	27	29	1.98
37542049--37542154	41	2.5	43	80	10	112	25	18	26	29	1.98
37546797--37546974	48	3.7	49	81	8	188	25	19	29	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37546658--37546976	47	6.8	48	73	10	180	26	19	28	24	1.99
37549511--37549563	23	2.4	22	76	20	56	9	18	1	69	1.25
37552322--37552393	36	2.0	36	91	0	117	18	19	6	55	1.64
37563676--37563847	93	1.8	93	88	2	265	28	29	20	22	1.98
37563669--37563844	46	3.8	46	76	11	171	29	28	19	21	1.98
37563720--37563863	46	3.1	45	72	18	127	29	27	19	22	1.98
37575308--37575381	29	2.6	29	86	4	96	27	16	31	25	1.96
37583316--37583389	29	2.6	29	86	4	96	27	16	31	25	1.96
37585606--37585683	39	2.0	40	94	2	140	38	24	20	16	1.93
37588605--37588685	38	2.1	38	90	0	126	23	19	23	33	1.97
37592124--37592337	40	5.4	40	97	1	394	28	28	20	21	1.98
37592124--37592337	79	2.7	79	96	1	392	28	28	20	21	1.98
37595398--37595519	43	2.9	42	79	7	138	27	27	15	29	1.96
37608607--37608702	28	3.4	28	77	9	97	18	8	1	71	1.16
37608607--37608702	15	6.8	13	68	18	59	18	8	1	71	1.16
37608631--37608699	9	7.3	9	71	12	50	15	8	1	73	1.14
37608606--37608688	32	2.6	33	79	9	84	19	7	1	72	1.15
37610305--37610332	6	4.7	6	100	0	56	14	0	0	85	0.59
37611829--37611896	20	3.3	20	64	8	55	20	2	30	45	1.66
37615669--37615797	46	2.8	46	91	2	206	21	22	27	28	1.99
37618690--37618973	50	5.6	50	72	5	239	29	26	17	26	1.97
37618740--37618917	51	3.5	51	73	7	182	29	25	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37618682--37618972	101	2.9	101	85	1	413	29	25	18	26	1.98
37619322--37619368	19	2.3	20	82	10	60	48	14	0	36	1.44
37623310--37623391	28	2.9	28	81	0	101	37	13	20	28	1.90
37634684--37634797	56	2.0	56	98	0	219	30	12	18	38	1.87
37634773--37634971	100	2.0	99	93	1	335	37	5	13	43	1.68
37637997--37638031	5	6.6	5	87	12	52	82	0	0	17	0.66
37642446--37642470	12	2.1	12	100	0	50	84	0	0	16	0.63
37661383--37661575	40	4.8	40	91	3	291	25	29	21	23	1.99
37665828--37665869	18	2.4	17	81	14	50	19	4	2	73	1.12
37665892--37665931	16	2.5	15	88	8	53	0	2	10	87	0.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250