genome.fa.s9.2.7.7.80.10.50.1000.219.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  219  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67634938--67635338	44	9.1	43	64	8	135	27	20	22	28	1.99
67634936--67635510	88	6.5	88	85	0	709	28	19	22	29	1.98
67634936--67635508	264	2.2	264	85	3	783	28	19	22	29	1.98
67635518--67635718	85	2.3	85	87	1	276	26	22	20	30	1.98
67635561--67635719	42	3.8	42	73	8	151	26	21	21	30	1.98
67636395--67636453	30	2.0	30	86	6	84	59	10	3	27	1.46
67645833--67645891	27	2.2	26	79	5	64	55	1	1	40	1.20
67646495--67646537	21	2.0	21	86	0	59	44	2	2	51	1.27
67647631--67647679	15	3.3	15	83	8	57	32	2	2	63	1.17
67654760--67655159	132	3.0	132	85	2	500	29	19	22	28	1.98
67656519--67656694	46	3.8	46	76	12	189	21	21	28	28	1.98
67656516--67656686	93	1.8	93	91	0	279	21	21	29	28	1.98
67659302--67659347	23	2.0	23	84	12	60	45	10	6	36	1.65
67659309--67659353	23	2.0	23	82	8	56	40	13	8	37	1.76
67662807--67662870	5	13.0	5	70	9	51	29	0	1	68	0.99
67662802--67662857	29	1.9	29	85	0	76	30	1	0	67	1.01
67662813--67662855	19	2.4	18	81	11	52	32	0	0	67	0.91
67662802--67662870	15	4.7	15	82	7	70	30	1	1	66	1.09
67665572--67665622	19	2.7	20	76	11	63	60	0	3	35	1.15
67665565--67665681	48	2.4	47	79	12	114	61	0	3	35	1.13
67665912--67666008	28	3.4	29	81	7	101	34	4	0	61	1.15
67665910--67666037	56	2.3	55	81	8	134	35	4	0	60	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67665956--67666037	28	2.9	29	78	7	89	36	6	0	57	1.24
67666805--67666855	23	2.2	24	82	10	61	56	0	5	37	1.23
67666917--67667007	45	2.0	45	93	0	155	24	10	17	47	1.80
67670902--67670972	23	3.1	22	71	20	56	59	2	0	38	1.12
67671071--67671119	20	2.4	21	93	3	82	61	8	0	30	1.25
67672279--67672316	19	2.0	19	100	0	76	57	0	26	15	1.38
67675465--67675518	10	5.6	10	75	14	51	29	1	1	66	1.12
67675467--67675525	29	2.0	30	83	9	77	33	1	3	61	1.23
67675476--67675536	29	2.1	29	81	6	70	36	1	3	59	1.24
67675539--67675583	17	2.6	17	78	0	63	51	0	0	48	1.00
67675664--67675697	18	1.9	18	94	5	61	50	0	2	47	1.16
67683218--67683242	6	4.2	6	100	0	50	84	0	0	16	0.63
67683321--67683357	18	2.1	18	90	5	58	35	8	5	51	1.55
67688940--67688987	23	2.0	24	88	8	71	0	22	14	62	1.32
67694543--67694593	25	2.1	25	85	7	70	56	11	0	31	1.35
67696024--67696061	20	1.9	20	88	0	58	42	10	2	44	1.52
67696023--67696066	20	2.2	20	80	4	54	40	11	2	45	1.53
67701527--67701684	49	3.2	48	95	2	273	31	7	31	30	1.85
67701802--67701880	37	2.1	37	90	0	122	24	18	31	25	1.98
67703749--67703851	43	2.4	43	100	0	206	22	15	35	26	1.94
67703833--67703906	29	2.6	29	89	4	105	25	16	32	25	1.96
67704296--67704611	40	7.9	40	92	0	436	24	21	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67704217--67704596	80	4.8	80	87	2	446	24	22	27	25	2.00
67704217--67704611	120	3.3	120	85	2	483	24	22	27	25	1.99
67708073--67708230	49	3.2	48	95	2	273	31	7	31	30	1.85
67708348--67708426	37	2.1	37	90	0	122	24	18	31	25	1.98
67710255--67710311	18	3.1	18	78	12	53	64	0	0	35	0.93
67710266--67710311	18	2.5	19	82	7	58	71	0	0	28	0.86
67710406--67710440	17	1.9	19	88	11	56	65	11	2	20	1.37
67711711--67711817	50	2.1	49	82	10	124	59	13	0	26	1.40
67715217--67715287	31	2.3	31	80	9	83	30	18	4	46	1.68
67720435--67720459	5	5.0	5	100	0	50	80	0	0	20	0.72
67720703--67721815	555	2.0	554	93	0	1915	32	21	14	31	1.94
67726036--67726090	25	2.2	25	100	0	110	50	21	7	20	1.71
67727101--67727205	37	3.2	32	73	21	99	44	0	1	53	1.11
67727162--67727203	15	2.8	15	78	10	50	50	0	0	50	1.00
67728854--67728916	30	2.1	30	88	5	92	26	4	11	57	1.53
67731689--67731731	20	2.0	20	82	8	50	0	32	2	65	1.06
67734088--67734129	21	2.0	21	86	9	59	35	0	14	50	1.43
67734289--67734322	16	2.1	16	89	10	52	55	0	8	35	1.31
67734445--67734554	44	2.5	45	84	1	150	20	20	16	42	1.89
67734534--67734558	6	4.2	6	100	0	50	16	16	16	52	1.76
67735145--67735179	16	2.3	15	90	5	52	62	2	2	31	1.24
67735294--67735353	23	2.9	20	70	15	59	58	5	6	30	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67735330--67735520	25	8.0	25	72	12	116	53	5	6	34	1.48
67736006--67736121	30	3.9	30	93	0	196	18	5	49	27	1.68
67736024--67736081	18	3.6	17	68	27	54	18	5	50	25	1.68
67736829--67736996	89	1.9	90	86	2	239	32	19	19	28	1.97
67737088--67737475	71	5.3	73	83	8	486	34	20	16	28	1.94
67737094--67737475	146	2.6	145	92	1	613	34	20	15	28	1.94
67737400--67737559	86	1.8	87	85	5	225	36	20	16	27	1.93
67737611--67737930	70	4.5	71	88	7	445	31	21	15	30	1.95
67737611--67737930	142	2.2	141	89	6	468	31	21	15	30	1.95
67737611--67737931	72	4.5	72	87	8	451	31	21	15	30	1.95
67738120--67738164	13	3.4	13	81	6	63	68	4	11	15	1.34
67737948--67738235	99	2.9	101	86	3	397	39	18	18	23	1.91
67738144--67738310	73	2.3	74	89	2	257	34	20	17	27	1.95
67745363--67745397	16	2.3	15	90	5	52	62	2	2	31	1.24
67745508--67745567	23	2.9	20	70	15	59	56	5	6	31	1.47
67745544--67745736	25	7.5	25	70	15	126	54	4	6	34	1.46
67746221--67746338	30	3.9	30	90	4	182	18	5	49	26	1.70
67746717--67746900	18	10.2	18	77	11	117	34	11	16	38	1.84
67746698--67746900	36	5.6	36	74	10	164	34	10	15	38	1.83
67748488--67748557	26	2.6	27	80	17	76	55	1	11	31	1.44
67748653--67748696	21	2.0	21	87	12	63	61	6	4	27	1.41
67748842--67748923	3	26.7	3	78	9	85	68	2	3	25	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67748961--67749013	13	4.3	12	79	9	54	69	1	3	24	1.15
67749658--67749738	22	4.0	22	67	23	79	72	3	9	13	1.23
67749657--67749728	36	2.0	36	100	0	144	72	2	11	13	1.23
67749680--67749706	14	1.9	14	100	0	54	74	0	14	11	1.08
67755916--67755949	14	2.5	13	86	9	50	14	82	2	0	0.79
67760512--67760565	18	3.3	18	66	28	57	22	7	48	22	1.75
67760507--67760605	30	3.3	30	92	0	171	17	6	49	27	1.70
67760512--67760595	18	5.4	17	64	30	53	20	7	47	25	1.75
67761407--67761856	94	4.9	92	81	9	417	37	18	16	27	1.92
67761660--67761692	14	2.4	14	94	0	57	63	6	12	18	1.48
67761432--67761856	185	2.3	178	81	9	464	38	18	16	27	1.91
67761346--67761856	87	5.7	86	79	11	415	37	18	15	27	1.91
67761769--67762203	147	3.0	146	93	0	744	32	20	16	30	1.94
67762393--67762437	13	3.4	13	84	6	63	68	4	11	15	1.34
67762221--67762509	100	2.9	101	87	4	399	40	18	16	24	1.91
67762320--67762776	177	2.6	174	87	5	636	37	19	17	25	1.93
67762742--67762776	14	2.5	14	95	0	61	57	2	20	20	1.54
67762668--67763246	75	6.9	82	71	18	326	34	20	16	28	1.94
67762635--67763260	248	2.5	239	82	8	710	35	20	15	28	1.94
67762756--67763253	162	3.1	157	79	11	553	35	19	16	28	1.94
67763151--67763186	14	2.7	13	91	8	63	47	5	13	33	1.67
67770339--67770399	23	2.7	22	87	5	95	73	18	1	6	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67770339--67770391	28	2.0	26	85	7	70	79	13	1	5	0.99
67770339--67770399	22	2.7	23	84	2	88	73	18	1	6	1.12
67770359--67770397	17	2.1	17	86	13	51	76	12	2	7	1.09
67772906--67772941	12	3.0	12	87	0	54	25	27	5	41	1.77
67772914--67772945	16	1.9	17	93	6	57	25	28	6	40	1.79
67780685--67781024	41	8.3	41	90	0	518	22	28	19	29	1.98
67780691--67781024	82	4.1	82	98	0	641	23	28	19	29	1.98
67781499--67781672	86	2.0	86	100	0	348	21	20	21	36	1.95
67784058--67784232	72	2.4	73	82	4	221	26	14	24	33	1.94
67784257--67784589	88	3.8	88	88	4	472	24	18	22	34	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250