genome.fa.s9.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  23  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6671597--6671621	6	4.2	6	100	0	50	16	36	0	48	1.46
6677707--6677791	39	2.1	39	81	14	102	31	17	16	34	1.93
6680191--6680233	18	2.4	18	84	3	61	13	39	27	18	1.89
6688067--6688101	17	2.0	17	88	5	52	45	0	0	54	0.99
6692446--6692636	95	2.0	95	96	0	355	21	21	28	27	1.99
6700602--6700636	17	2.1	17	100	0	70	62	0	17	20	1.32
6704437--6704470	16	2.1	16	89	10	52	50	0	0	50	1.00
6706325--6706370	15	3.0	15	87	3	65	52	0	15	32	1.43
6707719--6707767	25	1.9	26	83	4	64	40	2	6	51	1.38
6708224--6708277	21	2.6	21	78	0	63	16	27	24	31	1.96
6714541--6714602	30	2.1	30	90	0	97	16	14	22	46	1.83
6720405--6720442	20	1.9	20	88	0	58	42	7	23	26	1.81
6724946--6725014	12	5.6	12	77	13	68	69	1	27	1	1.05
6724944--6725026	38	2.2	37	89	4	139	69	1	26	2	1.08
6728287--6728382	42	2.3	42	85	3	122	34	30	16	18	1.93
6732430--6732553	55	2.3	54	81	5	142	23	28	26	21	1.99
6733351--6733563	94	2.3	94	85	5	283	25	28	18	26	1.98
6733398--6733563	47	3.5	46	77	8	174	24	28	18	27	1.98
6736768--6736839	29	2.4	30	81	6	85	54	11	13	20	1.70
6744295--6744354	10	6.0	10	82	7	68	23	8	1	66	1.28
6762973--6763029	25	2.3	24	82	14	71	64	1	1	31	1.13
6763651--6763711	26	2.3	26	91	5	97	40	1	1	55	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6763649--6763698	15	3.5	15	71	23	54	42	2	0	56	1.11
6765788--6765895	40	2.7	40	80	9	123	28	20	21	29	1.98
6765522--6765962	152	2.9	152	82	3	553	31	18	21	29	1.97
6765978--6766103	7	17.7	7	73	9	76	20	0	31	46	1.56
6765978--6766103	14	8.9	14	72	13	87	20	0	31	46	1.56
6765978--6766102	21	5.9	21	72	10	101	20	0	32	46	1.57
6766026--6766073	15	3.3	15	82	5	62	18	0	35	45	1.50
6767507--6767567	9	6.8	9	96	0	104	22	9	29	37	1.87
6767728--6767752	12	2.1	12	100	0	50	16	24	36	24	1.94
6770604--6770962	43	8.5	43	76	6	331	27	15	27	29	1.96
6770828--6770904	38	2.0	38	87	0	109	31	15	29	23	1.95
6770626--6770947	81	3.9	81	73	10	267	27	14	27	29	1.96
6771291--6771328	18	2.2	18	85	4	51	21	23	2	52	1.59
6772100--6772166	27	2.5	26	73	7	62	17	5	40	35	1.75
6774930--6774969	19	2.1	19	90	0	62	35	35	7	22	1.82
6776095--6776161	24	2.8	24	88	2	91	38	16	22	22	1.92
6783471--6783582	48	2.4	45	81	12	129	31	16	28	24	1.96
6783606--6783739	49	2.7	49	79	9	157	27	21	29	21	1.99
6784293--6784324	16	2.0	16	100	0	64	37	6	25	31	1.81
6790932--6790981	26	1.9	26	83	0	64	12	16	4	68	1.35
6792306--6792620	92	3.4	92	89	1	454	26	23	18	32	1.97
6800498--6800541	18	2.4	18	85	14	56	31	0	22	45	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6805113--6805154	21	2.0	21	100	0	84	61	4	14	19	1.49
6808654--6808819	90	1.8	90	82	7	212	24	24	21	29	1.99
6808823--6808995	48	3.6	48	77	3	168	30	30	14	24	1.94
6817345--6817427	41	2.0	40	97	2	157	51	15	4	27	1.63
6817962--6818074	42	2.7	42	87	0	145	31	30	14	23	1.94
6817994--6818207	48	4.6	49	70	11	162	29	28	17	24	1.98
6824666--6824706	15	2.7	15	73	26	50	17	26	34	21	1.95
6831969--6832098	67	1.9	67	84	3	172	23	20	33	21	1.97
6833405--6833429	11	2.3	11	100	0	50	28	0	0	72	0.86
6836788--6836842	28	2.0	28	92	0	92	36	14	3	45	1.63
6839312--6839366	24	2.2	26	80	9	69	3	27	0	69	1.05
6859235--6859281	21	2.1	23	85	14	64	59	0	4	36	1.17
6859956--6860020	20	3.3	20	66	23	57	23	9	13	53	1.68
6860736--6860850	61	1.9	62	85	7	164	48	5	6	39	1.53
6864035--6864085	20	2.5	20	80	0	66	37	15	13	33	1.87
6864398--6864459	31	2.0	31	84	6	81	37	20	4	37	1.75
6877843--6877908	25	2.7	25	83	2	71	43	21	19	15	1.87
6880244--6880545	28	10.8	29	75	9	83	29	17	18	35	1.94
6880239--6880545	56	5.5	56	76	8	162	28	17	18	35	1.94
6880291--6880513	84	2.7	84	82	2	243	30	17	16	35	1.92
6890400--6890506	27	4.0	27	78	0	97	42	18	14	24	1.87
6890622--6890655	17	1.9	17	88	5	50	14	44	29	11	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6894945--6895013	36	1.9	35	83	13	88	43	11	1	43	1.49
6899098--6899204	43	2.5	43	85	0	142	29	26	19	24	1.98
6900291--6900321	16	1.9	16	93	0	53	48	3	12	35	1.58
6903020--6903869	179	4.8	179	91	1	1307	28	24	17	29	1.97
6903493--6903587	43	2.2	45	86	3	131	28	25	14	31	1.95
6903672--6903766	43	2.2	45	86	3	131	28	25	14	31	1.95
6904993--6905152	54	2.9	54	85	7	209	15	21	16	46	1.83
6906572--6906624	15	3.5	15	78	0	52	67	1	1	28	1.11
6906602--6906703	11	8.8	11	68	25	59	60	1	3	33	1.26
6908288--6908539	83	3.0	83	88	0	344	28	18	19	33	1.95
6908463--6908935	119	4.0	119	92	1	770	30	18	17	33	1.94
6920770--6920816	14	3.1	15	79	14	53	70	4	0	25	1.05
6920762--6920907	15	10.4	14	66	22	58	61	3	2	32	1.27
6922435--6922700	83	3.2	83	86	0	336	28	19	19	32	1.96
6922624--6923075	119	3.8	119	87	0	643	32	17	15	33	1.92
6926597--6926652	27	2.2	24	74	20	58	14	23	14	48	1.80
6926607--6926662	27	2.1	27	100	0	112	10	23	17	48	1.79
6931323--6931347	13	1.9	13	100	0	50	84	0	0	16	0.63
6931306--6931402	15	6.4	16	69	19	57	64	2	3	29	1.20
6931330--6931443	48	2.4	48	75	10	115	64	1	3	30	1.21
6935017--6935065	22	2.3	22	85	3	73	42	18	6	32	1.75
6939195--6939227	6	5.5	6	100	0	66	15	0	66	18	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6940703--6940844	7	19.9	7	69	9	81	41	35	0	23	1.55
6940703--6940830	36	3.6	34	78	9	121	41	35	0	23	1.55
6940746--6940831	15	6.0	14	78	9	75	39	36	0	24	1.56
6940746--6940828	28	2.9	28	80	1	94	39	34	0	25	1.56
6940812--6940851	14	2.8	14	88	3	53	45	32	2	20	1.64
6940848--6940905	25	2.3	24	77	8	62	43	24	0	32	1.55
6941100--6941254	41	3.8	41	87	0	220	21	22	23	32	1.98
6943620--6943658	11	3.6	11	82	3	53	23	0	2	74	0.94
6943671--6943726	27	2.1	27	86	6	78	42	1	7	48	1.41
6943668--6943738	19	3.7	20	81	9	76	40	1	5	52	1.34
6946498--6946525	13	2.2	13	100	0	56	25	0	39	35	1.56
6949035--6949092	22	2.6	22	91	0	98	22	17	39	20	1.92
6951733--6951779	23	2.0	23	95	0	85	38	21	10	29	1.87
6959534--6959573	17	2.3	18	80	20	50	25	5	30	40	1.77
6960827--6960876	20	2.5	21	77	6	59	22	10	0	68	1.19
6961596--6961629	17	1.9	18	88	5	52	26	8	5	58	1.51
6967233--6967262	11	2.8	11	95	5	53	16	0	0	83	0.65
6967235--6967289	15	3.7	15	75	20	53	21	3	0	74	0.97
6967361--6967404	23	2.0	22	90	4	70	34	36	13	15	1.87
6967634--6967673	20	2.0	20	90	0	62	5	7	27	60	1.45
6967945--6967978	6	5.7	6	86	13	52	17	0	0	82	0.67
6967946--6968010	13	4.9	13	73	17	53	20	3	0	76	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6967953--6968008	12	4.3	12	77	16	58	19	3	0	76	0.93
6968082--6968125	23	2.0	22	86	13	63	34	38	13	13	1.84
6969710--6969759	10	5.0	10	79	13	50	22	10	2	66	1.32
6973222--6973280	27	2.2	26	79	8	66	30	18	3	47	1.65
6982317--6982382	23	3.0	22	83	14	82	63	3	3	30	1.24
6985497--6985570	36	2.1	36	100	0	148	29	13	18	37	1.90
6989513--6989543	15	2.1	15	100	0	62	35	19	0	45	1.51
6993139--6993332	92	2.1	92	88	5	286	44	4	4	46	1.41
6993310--6993408	52	2.0	52	80	11	118	45	6	2	46	1.39
6993365--6993398	17	2.0	17	94	0	59	44	5	0	50	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250