genome.fa.s12.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  100  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31555719--31555859	40	3.5	40	75	8	128	31	12	23	31	1.92
31555723--31555842	40	3.1	39	78	9	129	31	12	24	31	1.92
31562101--31563320	27	45.2	27	94	2	2040	26	22	10	40	1.87
31563325--31563519	27	7.2	27	85	1	207	35	17	19	26	1.94
31563325--31563517	54	3.6	54	84	3	239	35	17	19	26	1.94
31563719--31563801	27	3.1	26	87	5	112	19	21	21	37	1.94
31563889--31563947	22	2.7	22	81	0	64	20	25	22	32	1.98
31564303--31564489	6	30.8	6	74	16	163	20	17	13	48	1.80
31564303--31564489	85	2.2	85	96	0	338	20	17	13	48	1.80
31564303--31564489	30	6.4	30	83	11	253	20	17	13	48	1.80
31573246--31573288	14	3.1	14	80	6	52	58	9	2	30	1.42
31573246--31573284	13	2.9	13	84	3	51	58	10	2	28	1.44
31580722--31580764	12	3.8	11	82	11	52	69	2	2	25	1.12
31585803--31585926	56	2.2	55	87	10	169	42	2	4	50	1.34
31594413--31594452	13	3.0	13	85	7	53	67	0	5	27	1.11
31596211--31596251	21	2.0	21	90	0	64	41	14	4	39	1.67
31598349--31598551	40	5.1	40	79	9	209	26	28	21	24	1.99
31598335--31598552	79	2.7	80	81	7	230	27	27	20	24	1.99
31601056--31601116	30	2.0	30	100	0	122	42	6	22	27	1.78
31610849--31610917	34	2.0	35	88	2	104	27	17	15	39	1.90
31618346--31618552	53	3.8	53	77	3	216	20	23	17	38	1.93
31629208--31629424	114	1.9	116	89	4	341	25	16	25	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31629360--31629464	39	2.7	39	88	7	142	18	21	29	30	1.97
31629364--31629480	39	3.0	39	85	6	130	17	21	29	31	1.96
31631204--31631332	50	2.5	51	88	5	190	36	16	22	24	1.94
31631308--31631487	31	5.8	31	88	5	256	28	19	25	26	1.99
31631486--31631514	7	4.1	7	100	0	58	44	13	27	13	1.82
31631520--31631683	47	3.6	48	83	8	166	29	15	26	28	1.96
31631614--31631710	42	2.3	42	92	3	160	30	14	26	27	1.95
31632822--31632958	53	2.5	55	81	4	163	21	24	18	35	1.95
31634496--31634542	24	2.0	24	84	16	62	51	17	0	31	1.46
31635183--31635222	19	2.0	20	85	4	55	0	25	2	72	0.97
31635177--31635237	31	2.0	31	87	6	88	1	22	3	72	1.09
31636210--31636292	42	2.0	42	92	0	139	31	20	18	30	1.96
31639081--31639258	49	3.7	47	79	9	198	24	16	32	26	1.96
31642922--31642955	17	2.0	17	100	0	68	29	23	29	17	1.97
31646853--31647148	46	6.3	46	71	14	160	27	19	28	24	1.99
31647620--31647656	9	4.1	9	85	0	56	48	13	8	29	1.71
31648145--31648225	17	4.6	17	68	20	51	37	2	2	58	1.25
31649610--31649649	21	2.0	20	95	5	71	12	40	30	17	1.86
31657856--31658312	49	9.5	49	92	5	749	32	8	29	29	1.86
31658855--31658933	37	2.1	37	90	0	122	24	18	31	25	1.98
31667090--31667121	3	10.7	3	100	0	64	31	0	0	68	0.90
31667089--31667156	6	11.0	6	84	6	64	26	1	0	72	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31667089--31667156	19	3.6	18	83	13	68	26	1	0	72	0.94
31671653--31671707	21	2.7	20	79	20	60	16	36	21	25	1.94
31672316--31672627	89	3.5	89	88	2	448	23	25	17	32	1.97
31674680--31674745	6	10.3	7	87	8	56	22	1	1	74	0.99
31674690--31674745	6	9.0	6	84	7	67	23	1	0	75	0.90
31674709--31674743	13	2.8	12	87	8	52	20	2	0	77	0.90
31674687--31674745	19	3.1	19	85	4	75	23	1	0	74	0.91
31676119--31676423	89	3.4	89	86	0	405	22	23	19	34	1.96
31679494--31679609	44	2.6	45	87	2	180	26	28	23	21	1.99
31706729--31706906	27	6.6	27	83	3	205	26	15	28	29	1.96
31706730--31706885	82	1.9	81	88	3	233	26	15	28	29	1.96
31706726--31706906	82	2.2	81	83	2	229	27	15	27	29	1.96
31727884--31727921	19	2.0	19	100	0	76	47	15	10	26	1.78
31729062--31729104	22	2.0	22	81	9	52	41	27	4	25	1.75
31729672--31729822	42	3.6	42	86	1	203	28	25	15	30	1.96
31735316--31735351	9	3.8	10	89	10	58	72	0	0	27	0.85
31736009--31736097	47	1.9	46	97	2	169	23	21	14	40	1.90
31737578--31737674	47	2.1	47	98	0	185	47	4	7	41	1.50
31737578--31737701	47	2.6	44	87	9	124	50	4	8	37	1.51
31738191--31738247	20	2.8	20	73	5	53	28	19	17	35	1.94
31741475--31741545	21	3.3	21	75	7	72	12	32	26	28	1.93
31741466--31741557	43	2.1	43	84	4	123	16	34	23	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31757200--31757451	40	6.3	40	91	2	362	23	20	29	26	1.99
31757794--31757943	74	2.0	74	98	0	291	19	21	18	41	1.91
31762393--31762451	19	3.3	19	65	26	56	42	8	6	42	1.61
31762385--31762450	34	1.9	34	100	0	132	45	7	9	37	1.64
31762389--31762461	34	2.1	34	92	0	119	43	8	10	36	1.70
31762688--31763104	35	11.6	35	72	13	233	40	16	18	24	1.91
31762685--31763104	108	3.9	108	80	5	411	40	16	18	24	1.91
31762686--31763104	73	5.8	72	76	8	345	40	16	18	24	1.91
31763522--31763558	13	2.6	14	87	12	58	13	40	0	45	1.43
31766967--31767031	32	2.0	32	93	0	112	50	9	23	16	1.74
31767416--31767735	109	2.9	109	100	0	640	36	6	8	48	1.60
31770670--31770735	32	2.1	32	94	0	114	24	13	27	34	1.93
31771519--31771551	17	1.9	17	100	0	66	36	0	0	63	0.95
31780586--31780664	37	2.1	37	90	0	122	25	31	18	24	1.98
31780783--31781384	47	12.6	47	90	3	934	27	29	9	33	1.88
31780834--31780911	25	3.2	25	62	10	63	30	29	6	33	1.83
31780783--31781384	96	6.3	96	97	0	1073	27	29	9	33	1.88
31784350--31784641	141	2.1	141	85	4	394	32	21	18	27	1.97
31789989--31790048	31	1.9	31	86	0	84	28	13	15	43	1.84
31790854--31790880	12	2.2	12	100	0	54	22	0	0	77	0.76
31815896--31815926	16	1.9	16	93	0	53	29	12	32	25	1.93
31817314--31817344	15	2.1	15	93	0	53	19	0	25	54	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31825120--31825150	15	2.1	15	93	0	53	19	0	25	54	1.44
31826155--31826276	40	3.0	40	91	1	190	32	15	25	26	1.95
31827025--31827138	22	5.2	22	69	16	76	43	32	1	21	1.63
31826955--31827136	65	2.8	64	77	7	181	44	31	1	23	1.60
31827408--31827483	8	9.1	8	81	17	84	68	1	0	30	0.98
31827425--31827483	8	7.5	8	88	9	86	69	0	0	30	0.89
31827578--31827625	17	2.9	16	81	9	51	75	0	4	20	0.97
31831539--31831636	27	3.5	28	86	5	119	33	28	12	25	1.92
31841079--31841165	44	2.0	43	93	2	147	26	18	24	31	1.98
31845441--31845511	18	3.9	18	71	14	65	35	14	5	45	1.68
31848855--31848977	44	2.8	44	85	4	176	26	36	0	36	1.57
31849397--31849433	19	1.9	19	94	0	65	29	2	32	35	1.72
31852264--31852517	46	5.4	46	79	8	205	22	30	18	27	1.98
31852347--31852522	94	1.9	92	84	6	239	22	30	19	27	1.98
31855092--31855141	19	2.6	19	100	0	100	16	34	34	16	1.90
31856323--31856361	21	1.9	20	84	5	51	43	2	5	48	1.38
31857629--31858033	46	8.8	46	91	2	512	20	23	14	40	1.89
31861195--31861254	28	2.1	28	96	0	111	38	26	6	28	1.81
31870794--31870857	24	2.7	24	92	0	101	25	17	32	25	1.96
31875923--31876010	47	1.9	47	81	4	108	28	27	7	36	1.85
31881335--31881394	24	2.5	24	97	0	111	28	15	33	23	1.94
31890019--31890193	46	3.8	46	76	11	169	29	27	21	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31890026--31890196	92	1.8	93	88	1	263	28	27	21	22	1.99
31896667--31896764	37	2.6	37	95	0	169	24	20	30	24	1.98
31902744--31902856	39	2.9	39	95	0	199	25	23	28	23	1.99
31904782--31904945	39	4.2	39	92	0	256	25	22	28	23	1.99
31911291--31911325	13	2.7	13	95	0	61	5	34	31	28	1.81
31916868--31916928	27	2.3	27	88	0	86	27	14	18	39	1.90
31916659--31917195	267	2.0	267	92	0	885	20	20	28	30	1.98
31917135--31917346	27	8.0	27	80	3	205	28	14	16	40	1.87
31917133--31917339	105	1.9	107	86	2	292	29	14	15	40	1.87
31920418--31920795	40	9.5	40	92	2	566	26	20	26	25	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276