genome.fa.s12.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  147  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47888798--47888950	60	2.6	60	77	7	150	42	11	4	41	1.62
47890014--47890197	69	2.7	68	82	4	201	40	8	18	32	1.80
47891068--47891130	20	3.2	20	76	13	60	44	1	0	53	1.10
47891164--47891220	27	2.1	27	87	6	80	47	0	1	50	1.11
47891524--47891554	13	2.4	13	100	0	62	29	0	12	58	1.35
47892160--47892236	16	4.9	16	70	9	68	16	1	29	51	1.53
47892340--47892371	16	2.0	16	93	0	55	34	0	28	37	1.57
47892335--47892419	39	2.3	37	82	8	102	34	0	21	44	1.52
47892335--47892416	19	4.4	19	80	11	80	34	0	20	45	1.52
47893006--47893764	126	6.0	126	94	0	1191	35	17	18	28	1.94
47897236--47897273	18	2.1	18	95	0	67	39	10	26	23	1.87
47897867--47897905	7	5.6	7	87	0	60	56	10	2	30	1.46
47898889--47899022	48	2.8	48	82	9	150	54	5	6	33	1.49
47899910--47899951	14	3.1	14	79	6	50	59	2	0	38	1.10
47900391--47901033	126	5.2	124	80	4	645	39	15	16	28	1.90
47902571--47902633	20	3.2	20	76	13	60	44	1	0	53	1.10
47902667--47902723	27	2.1	27	87	6	80	47	0	1	50	1.11
47903027--47903057	13	2.4	13	100	0	62	29	0	12	58	1.35
47903662--47903739	16	4.9	16	73	14	72	16	1	32	50	1.54
47903843--47903874	16	2.0	16	93	0	55	34	0	28	37	1.57
47903838--47903919	39	2.2	37	82	8	96	34	0	20	45	1.52
47903838--47903919	19	4.4	19	80	11	80	34	0	20	45	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47904510--47905142	126	5.0	126	93	1	993	35	17	18	28	1.94
47908618--47908652	18	1.9	18	94	0	61	37	8	28	25	1.85
47909246--47909284	7	5.6	7	87	0	60	56	10	2	30	1.46
47910268--47910402	48	2.8	48	82	6	132	54	5	6	33	1.49
47911290--47911330	13	3.1	14	79	10	50	60	2	0	36	1.10
47911611--47911693	34	2.5	33	82	3	103	42	1	12	44	1.49
47911607--47911693	33	2.6	33	83	3	113	41	1	14	42	1.54
47911790--47912410	126	5.0	126	82	3	684	39	15	16	28	1.90
47913892--47913916	13	1.9	13	100	0	50	32	16	40	12	1.84
47913960--47914389	38	11.3	38	94	1	743	30	26	23	20	1.98
47918096--47918243	40	3.7	40	85	0	188	33	21	17	27	1.96
47924250--47924363	35	3.3	35	82	4	140	34	22	12	30	1.91
47927098--47927176	27	2.9	27	84	3	88	29	26	15	29	1.96
47931850--47931989	40	3.5	40	88	0	199	31	25	18	25	1.98
47936626--47936823	47	4.2	47	93	0	315	31	9	31	27	1.89
47937608--47938622	47	21.2	49	96	1	1502	28	30	9	32	1.88
47943994--47945362	684	2.0	684	100	0	2738	33	13	17	35	1.90
47951728--47951785	24	2.5	23	81	16	66	62	0	5	32	1.18
47952230--47952308	37	2.1	37	90	0	122	24	18	31	25	1.98
47964025--47964245	46	4.8	46	97	1	399	20	20	28	30	1.97
47968848--47968980	62	2.2	62	82	8	157	53	6	3	36	1.44
47969354--47969391	18	2.1	18	90	0	58	39	13	23	23	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47970922--47970972	24	2.1	24	82	7	59	64	1	3	29	1.22
47971149--47971205	30	1.9	29	85	3	78	43	3	22	29	1.70
47977159--47977197	18	2.0	20	85	9	55	23	2	23	51	1.61
47981655--47982094	49	9.2	49	94	2	729	28	30	8	32	1.87
47989014--47989096	35	2.4	33	76	13	78	37	22	20	19	1.94
47988872--47989144	143	1.9	143	87	1	404	36	22	19	21	1.95
47988863--47989096	69	3.3	69	70	10	195	35	23	20	20	1.96
47992493--47992889	40	9.9	40	98	0	749	25	20	29	24	1.99
48002799--48002985	40	4.7	40	99	0	365	22	20	25	31	1.98
48002798--48003058	120	2.2	120	86	3	357	22	21	25	30	1.99
48009910--48009944	17	2.0	18	88	5	54	57	0	8	34	1.29
48009915--48009953	17	2.4	17	86	4	53	58	0	10	30	1.31
48017257--48017577	48	6.7	48	80	0	365	28	16	28	26	1.97
48017246--48017577	96	3.5	96	86	1	470	28	15	28	27	1.96
48023592--48023770	48	3.7	47	82	4	214	27	18	28	25	1.98
48025177--48025300	47	2.6	47	81	10	133	23	27	18	30	1.98
48025321--48025488	46	3.6	46	77	12	182	23	29	19	27	1.98
48025321--48025491	94	1.8	92	85	7	238	23	29	19	26	1.99
48040996--48041025	14	2.1	15	93	6	53	63	13	10	13	1.52
48041069--48042134	533	2.0	533	100	0	2132	24	22	21	30	1.99
48041903--48042882	490	2.0	490	100	0	1960	29	23	18	28	1.98
48044066--48044095	14	2.1	15	93	6	53	63	13	10	13	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48052540--48052623	43	2.0	43	95	0	150	29	19	35	15	1.92
48064360--48064469	41	2.8	39	75	9	107	36	24	13	25	1.92
48065372--48065434	4	15.2	4	74	12	56	3	22	4	69	1.21
48065905--48066051	55	2.7	55	86	6	199	38	15	23	23	1.93
48066215--48066316	29	3.4	29	75	10	91	20	15	27	36	1.93
48067777--48067814	17	2.2	17	100	0	76	60	13	5	21	1.52
48075349--48075412	8	7.5	8	77	19	67	32	1	1	64	1.13
48075349--48075412	15	3.8	16	80	17	67	32	1	1	64	1.13
48075392--48075442	27	1.9	26	84	11	68	21	0	5	72	1.05
48075392--48075442	26	1.9	27	88	11	79	21	0	5	72	1.05
48075392--48075468	26	2.8	27	75	16	68	28	1	3	66	1.17
48075400--48075452	26	2.0	27	85	3	72	26	0	5	67	1.12
48077044--48077106	18	3.0	21	71	19	69	65	0	1	33	1.03
48086649--48086687	13	3.0	13	85	10	53	74	0	2	23	0.94
48086650--48086682	9	3.7	9	92	8	50	75	0	3	21	0.93
48086754--48086807	28	2.0	28	85	3	74	64	5	7	22	1.40
48089519--48089753	118	2.0	119	94	0	409	40	15	11	31	1.83
48090765--48090796	17	1.9	17	93	6	57	21	6	15	56	1.62
48093289--48093342	26	2.1	26	82	6	65	81	1	12	3	0.91
48093300--48093342	14	3.1	14	86	6	52	83	0	13	2	0.74
48101854--48101882	13	2.2	13	100	0	58	24	31	0	44	1.54
48102308--48102452	27	5.4	27	79	0	110	21	28	17	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48102286--48102439	81	1.9	81	83	0	200	20	25	17	36	1.94
48102731--48103194	239	1.9	239	87	2	682	35	23	9	31	1.86
48107439--48107479	21	2.0	20	85	4	55	51	7	4	36	1.51
48108189--48108366	64	2.7	66	82	10	190	59	1	1	37	1.15
48108219--48108244	6	4.3	6	100	0	52	84	0	0	15	0.62
48108243--48108284	16	2.7	15	82	17	50	50	2	0	47	1.14
48108202--48108366	65	2.5	66	85	7	219	60	1	0	37	1.07
48108338--48108391	23	2.4	23	79	11	58	64	0	3	31	1.11
48114106--48114160	13	4.2	13	70	21	51	18	16	32	32	1.93
48121742--48121837	48	2.0	48	93	0	165	29	8	26	36	1.85
48121932--48121956	11	2.3	11	100	0	50	32	0	20	48	1.50
48125242--48125286	20	2.2	21	92	4	74	66	6	11	15	1.42
48125548--48125609	30	2.1	30	93	3	108	12	6	20	59	1.55
48126163--48126205	21	2.0	21	86	8	61	58	0	2	39	1.11
48126182--48126218	15	2.3	17	86	9	51	62	0	5	32	1.18
48130560--48130599	21	2.0	21	90	5	64	20	27	40	12	1.88
48131730--48131994	46	5.6	48	80	12	227	23	28	19	28	1.98
48131725--48132000	94	3.0	90	78	13	285	24	28	19	27	1.99
48131730--48131994	140	1.9	142	83	10	348	23	28	19	28	1.98
48134014--48134043	15	2.0	15	93	0	51	40	13	16	30	1.87
48135626--48135656	14	2.2	14	100	0	62	29	6	6	58	1.48
48136792--48136832	21	2.0	21	100	0	82	24	41	14	19	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48142055--48142094	20	2.0	20	85	0	53	30	22	22	25	1.99
48162332--48162422	40	2.3	38	81	9	94	27	26	16	29	1.97
48164016--48164049	17	2.0	17	88	11	52	70	0	29	0	0.87
48165799--48165849	20	2.5	20	93	0	84	19	37	29	13	1.90
48166417--48166507	25	3.6	25	80	11	96	29	24	16	29	1.96
48171889--48171917	7	4.1	7	100	0	58	0	68	0	31	0.89
48192314--48192378	29	2.3	30	81	10	82	46	0	24	29	1.53
48192864--48193026	43	3.8	43	80	5	161	28	15	25	31	1.96
48196260--48196351	46	2.0	46	100	0	184	23	13	26	36	1.91
48200637--48200793	43	3.7	43	74	10	158	29	15	22	31	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276