genome.fa.s12.2.7.7.80.10.50.1000.223.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  223  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74340288--74340335	2	23.5	2	91	4	78	2	47	0	50	1.12
74356585--74356625	21	2.0	21	95	0	73	51	7	26	14	1.69
74358783--74358812	14	2.2	14	94	5	53	13	0	0	86	0.57
74359171--74359198	13	2.2	13	100	0	56	71	0	0	28	0.86
74361628--74361671	20	2.1	21	87	4	63	50	6	9	34	1.61
74361643--74361747	29	3.8	28	76	17	103	56	4	5	33	1.44
74361649--74361713	25	2.5	27	72	23	66	53	4	6	35	1.46
74361930--74361970	21	2.0	20	85	4	55	56	7	2	34	1.40
74361994--74362173	47	3.8	46	81	13	186	60	4	3	31	1.35
74361916--74362191	23	11.9	23	73	19	134	57	6	3	32	1.40
74362513--74362565	2	26.5	2	100	0	106	0	0	49	50	1.00
74363180--74363273	30	3.3	30	72	22	101	30	2	24	42	1.66
74363190--74363267	26	2.8	28	71	25	83	29	2	21	46	1.65
74363532--74363747	46	4.7	46	77	11	210	27	18	29	24	1.98
74364568--74364597	14	2.1	14	93	0	51	20	6	10	63	1.47
74370565--74370774	28	7.5	28	97	0	377	33	28	11	25	1.91
74373139--74373196	29	2.0	29	100	0	116	31	27	6	34	1.83
74375123--74375180	28	2.1	28	100	0	116	32	17	3	46	1.65
74376447--74376522	33	2.3	33	93	0	125	15	10	32	40	1.82
74376461--74376536	33	2.3	33	86	0	98	19	11	32	35	1.88
74376461--74376546	33	2.6	33	83	3	84	20	11	33	33	1.89
74377185--74377229	23	2.0	23	82	8	56	28	2	17	51	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74378877--74378999	28	4.4	28	90	2	176	33	28	12	26	1.92
74381460--74381492	9	3.8	9	84	8	50	45	0	3	51	1.16
74383561--74383642	26	3.2	26	98	0	155	30	7	25	36	1.83
74384713--74384818	52	2.0	52	100	0	212	21	15	29	33	1.94
74385277--74385387	27	4.1	26	86	7	141	17	24	22	36	1.95
74385277--74385387	54	2.1	54	87	3	161	17	24	22	36	1.95
74387570--74387610	22	1.9	21	85	5	55	43	4	7	43	1.53
74396937--74396970	14	2.4	14	90	0	50	29	0	2	67	1.05
74403096--74403195	18	5.6	18	80	0	101	34	17	14	35	1.89
74403084--74403195	36	3.1	36	82	0	134	35	16	13	34	1.87
74404245--74404298	27	2.0	27	92	0	90	29	12	9	48	1.73
74404449--74404508	22	3.0	20	70	27	54	0	28	5	66	1.12
74404651--74404719	28	2.4	28	82	7	75	50	7	0	42	1.30
74404651--74404734	29	2.9	28	80	7	78	50	7	0	42	1.30
74405058--74405094	3	12.3	3	100	0	74	67	0	0	32	0.91
74407931--74407961	13	2.4	13	94	0	53	45	3	22	29	1.68
74416307--74416511	46	4.5	46	94	0	329	28	27	21	21	1.99
74416946--74417005	30	2.0	30	90	0	93	30	25	8	36	1.85
74424443--74424502	30	2.0	30	90	0	93	30	25	8	36	1.85
74427399--74427508	45	2.5	45	85	4	152	23	21	13	40	1.89
74427360--74427529	90	1.9	90	81	9	211	23	21	12	42	1.87
74428849--74428876	14	2.0	14	100	0	56	28	14	35	21	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74430681--74430735	27	2.1	26	83	10	67	58	5	5	30	1.44
74432412--74432601	90	2.1	89	81	8	231	38	17	18	24	1.92
74433016--74433056	20	2.0	20	85	4	55	41	4	19	34	1.73
74435871--74435908	20	1.9	20	94	0	67	55	10	0	34	1.34
74438254--74438309	23	2.3	24	85	11	71	39	1	1	57	1.20
74439277--74439305	6	4.8	6	100	0	58	0	0	48	51	1.00
74439548--74439590	20	2.1	20	83	12	52	48	2	0	48	1.14
74453273--74453357	35	2.4	35	82	7	102	37	12	22	27	1.91
74460567--74460618	20	2.6	20	93	0	86	17	34	34	13	1.89
74464552--74464595	22	2.0	23	95	4	81	50	20	4	25	1.67
74486624--74486648	11	2.3	11	100	0	50	44	12	0	44	1.41
74488571--74488629	29	2.0	29	100	0	118	27	16	16	38	1.91
74489092--74489154	30	2.1	30	88	5	92	26	6	11	55	1.59
74489276--74489308	11	2.9	12	86	13	52	66	0	0	33	0.92
74519931--74520121	41	4.7	41	84	3	251	20	22	27	29	1.99
74519931--74520121	81	2.3	82	85	2	251	20	22	27	29	1.99
74530887--74530919	13	2.6	13	90	4	50	48	12	0	39	1.40
74535061--74535105	20	2.3	21	78	21	53	24	0	8	66	1.20
74537534--74537578	20	2.2	21	84	7	58	40	15	4	40	1.67
74540603--74540976	188	2.0	188	93	0	640	35	18	14	31	1.91
74548693--74548807	5	24.0	5	83	10	143	57	0	1	40	1.15
74553732--74553942	105	2.0	105	99	0	413	36	11	18	34	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74555513--74555761	68	3.6	68	94	3	410	23	23	27	25	2.00
74566255--74566294	5	7.8	5	94	5	71	60	0	0	40	0.97
74566385--74566426	22	2.0	21	86	13	59	78	0	0	21	0.75
74570320--74570361	19	2.2	19	100	0	84	42	9	33	14	1.78
74574274--74574302	13	2.1	14	93	6	51	48	0	3	48	1.18
74579042--74579199	41	3.9	40	81	8	160	29	27	15	28	1.96
74579086--74579222	40	3.4	40	79	8	136	29	29	16	24	1.96
74580645--74580947	151	2.0	151	99	0	597	21	23	5	48	1.72
74583297--74583396	26	3.9	25	81	3	110	38	7	21	34	1.80
74584590--74584648	31	2.0	30	93	6	102	8	20	13	57	1.62
74586366--74586426	30	2.0	30	100	0	122	45	6	27	19	1.75
74588752--74588933	46	4.0	46	89	1	240	40	14	23	21	1.90
74591625--74591659	12	2.9	12	95	0	61	48	11	17	22	1.79
74591634--74591713	31	2.5	31	87	2	106	50	12	17	20	1.78
74591850--74591951	27	3.8	26	87	5	123	36	20	23	19	1.95
74592119--74592205	27	3.2	27	96	0	156	24	20	18	36	1.95
74592213--74592285	27	2.7	26	91	4	110	36	4	28	30	1.76
74594940--74595073	66	2.0	67	95	1	243	35	26	14	23	1.93
74600768--74600880	46	2.5	44	80	11	113	23	29	17	29	1.97
74601811--74601913	27	3.8	26	81	12	93	33	21	25	19	1.97
74603499--74603551	26	2.1	26	96	3	99	35	26	5	32	1.80
74606681--74606797	34	3.4	34	78	4	119	29	19	22	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74608143--74608237	41	2.4	39	83	3	118	34	24	13	27	1.93
74609080--74609145	34	2.1	33	83	11	84	6	18	4	71	1.24
74611608--74611659	3	17.7	3	88	4	79	1	30	0	67	1.02
74614387--74614430	22	2.0	22	86	8	63	34	0	36	29	1.58
74614715--74614758	22	2.0	22	86	8	63	31	0	38	29	1.58
74624243--74624279	18	2.0	19	94	5	67	37	5	16	40	1.71
74625025--74625076	27	1.9	27	84	0	68	63	1	1	32	1.16
74627571--74627630	21	2.8	22	78	14	63	60	6	1	31	1.33
74627520--74627788	85	3.2	85	96	1	497	57	4	3	34	1.35
74627723--74627820	11	9.9	10	70	24	66	64	1	4	30	1.19
74627752--74627828	10	7.5	11	73	17	60	63	1	3	31	1.20
74627756--74627829	19	3.8	19	77	15	71	63	1	4	31	1.21
74628499--74628576	24	3.2	24	66	25	65	38	3	3	53	1.37
74628521--74628600	24	3.3	24	68	25	78	43	3	1	51	1.27
74628499--74628616	48	2.5	48	94	1	202	39	3	2	54	1.31
74641351--74641616	47	5.7	48	77	13	202	23	28	18	28	1.98
74641356--74641613	140	1.8	140	86	6	371	23	29	18	29	1.98
74647882--74648031	43	3.5	43	79	0	167	34	23	14	28	1.93
74647951--74648030	42	1.9	42	94	0	142	35	23	13	27	1.93
74652762--74652808	23	2.1	21	88	7	67	76	2	0	21	0.89
74652904--74652990	18	4.6	17	75	20	68	63	1	1	34	1.10
74652906--74653004	19	5.3	18	71	15	67	59	1	1	38	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74653184--74653219	11	3.2	11	92	4	54	27	0	2	69	1.02
74653187--74653235	11	4.4	12	78	14	52	28	0	4	67	1.09
74653151--74653214	29	2.2	31	77	11	71	39	1	1	57	1.17
74653143--74653220	20	3.7	22	70	17	60	38	1	1	58	1.14
74653300--74653324	7	3.6	7	100	0	50	28	0	0	72	0.86
74653274--74653424	74	2.0	74	97	0	284	27	8	10	52	1.65
74653374--74653398	7	3.6	7	100	0	50	28	0	0	72	0.86
74654725--74654787	30	2.1	30	93	0	108	26	4	9	58	1.49
74655461--74655721	41	6.4	41	89	2	391	32	20	26	19	1.97
74655430--74655721	123	2.4	123	86	2	401	33	20	25	19	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276