genome.fa.s12.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  143  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46548778--46549320	241	2.3	241	94	0	935	39	19	10	30	1.86
46548778--46549356	27	21.6	27	82	7	583	38	19	10	31	1.86
46549348--46549775	27	15.9	27	87	0	552	37	17	20	24	1.94
46550207--46550271	22	3.0	22	80	8	78	20	26	23	30	1.98
46550422--46550509	26	3.4	26	82	4	106	19	21	18	40	1.91
46550437--46550509	27	2.8	26	81	4	92	21	23	16	38	1.93
46550627--46550714	6	14.3	6	72	17	65	19	19	13	47	1.82
46550630--46550693	25	2.6	25	92	0	101	18	21	14	45	1.85
46556886--46556923	21	1.9	19	85	15	51	26	0	13	60	1.33
46559044--46559085	21	2.0	21	100	0	84	42	23	14	19	1.87
46565453--46565493	19	2.1	20	86	4	57	68	2	0	29	1.03
46565742--46565791	26	1.9	26	84	8	66	30	4	4	62	1.32
46571342--46571380	2	19.5	2	100	0	78	51	48	0	0	1.00
46582571--46582614	8	5.6	8	84	10	56	52	25	15	6	1.68
46582825--46582949	29	4.3	29	81	3	128	26	12	30	30	1.93
46589892--46589934	21	2.1	20	86	4	59	32	2	20	44	1.65
46600360--46600398	21	1.9	20	94	5	69	30	0	23	46	1.53
46600360--46600406	21	2.3	21	85	10	62	31	2	21	44	1.64
46602729--46602803	38	2.0	38	94	0	132	22	17	24	36	1.95
46605962--46606040	37	2.1	37	90	0	122	25	31	18	24	1.98
46606159--46606490	47	7.1	47	91	0	513	28	30	9	32	1.88
46609910--46610048	40	3.5	38	76	7	125	24	26	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46625930--46626004	28	2.7	28	97	0	141	25	30	26	17	1.97
46625986--46626112	33	3.8	33	86	0	155	25	25	21	28	1.99
46625986--46626143	66	2.5	66	77	5	164	25	24	22	27	2.00
46626304--46626382	27	2.9	27	84	3	88	36	18	21	22	1.95
46626521--46626824	27	11.3	27	90	0	421	25	20	19	35	1.96
46629097--46629139	10	4.1	10	82	11	50	58	4	0	37	1.19
46629097--46629141	22	2.0	22	91	0	72	57	4	0	37	1.19
46632270--46632943	48	14.0	48	94	0	1078	34	6	27	31	1.83
46633084--46633186	37	2.8	37	92	0	170	23	18	32	26	1.97
46641054--46641144	40	2.3	39	81	7	103	30	14	25	29	1.95
46644400--46644483	40	2.1	40	84	4	107	33	26	16	23	1.96
46647940--46648017	27	2.9	26	81	7	93	21	20	21	35	1.96
46648062--46648331	27	9.9	27	74	7	170	32	8	18	40	1.81
46648055--46648353	81	3.7	81	74	6	196	32	9	18	40	1.83
46648035--46648369	27	12.3	27	74	7	144	32	9	19	39	1.83
46648360--46648430	27	2.7	27	86	2	90	30	23	19	25	1.98
46648370--46648442	27	2.7	27	86	0	83	31	27	17	23	1.97
46658044--46658260	47	4.8	47	79	10	245	31	22	15	30	1.95
46658049--46658217	85	2.0	85	91	0	275	31	23	15	29	1.95
46658129--46658267	48	2.9	48	89	3	210	30	23	15	30	1.95
46664262--46664310	21	2.2	23	85	7	66	42	26	0	30	1.55
46667316--46667420	40	2.6	40	76	5	97	34	25	14	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46670777--46670913	43	3.2	43	72	10	111	28	24	19	27	1.99
46671831--46671865	18	1.9	19	88	11	56	45	0	14	40	1.45
46672449--46672558	27	4.1	27	81	5	125	36	21	22	19	1.95
46672449--46672558	54	2.1	53	87	1	157	36	21	22	19	1.95
46673078--46673119	17	2.4	18	80	4	50	38	28	0	33	1.58
46673999--46674093	24	4.0	24	81	10	122	21	37	6	34	1.79
46679532--46679692	40	4.1	40	84	4	218	27	27	20	23	1.99
46686844--46687019	40	4.4	40	78	6	171	26	27	21	25	1.99
46690143--46690253	27	4.1	27	86	5	145	35	22	24	18	1.96
46690143--46690253	54	2.1	53	91	1	177	35	22	24	18	1.96
46690769--46690810	17	2.4	18	80	4	50	38	28	0	33	1.58
46691684--46691784	24	4.2	24	93	0	166	19	41	3	34	1.70
46701257--46701323	34	2.0	34	96	0	125	28	17	14	38	1.90
46703315--46703417	42	2.4	42	80	4	118	24	18	25	32	1.97
46703270--46703428	43	3.7	43	71	13	130	25	18	23	31	1.98
46704670--46704809	24	5.9	23	69	13	86	32	26	13	27	1.94
46706884--46706929	23	2.0	24	86	4	67	17	2	28	52	1.56
46711011--46711169	85	1.9	85	80	7	189	26	18	25	29	1.98
46713591--46713739	75	2.0	74	88	2	210	38	19	22	18	1.92
46717889--46718049	47	3.4	47	85	0	196	32	8	31	28	1.86
46718167--46718245	37	2.1	37	90	0	122	24	18	31	25	1.98
46722489--46722642	28	5.5	28	97	0	274	33	28	11	25	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46730152--46730263	28	4.0	28	96	1	190	34	28	10	25	1.90
46730664--46730839	86	2.1	85	96	3	327	27	26	9	36	1.87
46735874--46735962	27	3.3	27	87	3	117	29	13	16	40	1.87
46735885--46736404	27	19.6	27	77	7	320	31	9	19	39	1.84
46736001--46736398	80	5.0	80	76	9	321	31	9	19	39	1.84
46735887--46736398	53	9.7	53	77	10	327	31	9	19	39	1.84
46741762--46741876	43	2.7	43	88	0	176	24	26	21	26	1.99
46743582--46743611	15	2.1	15	93	6	53	36	26	6	30	1.82
46752690--46752739	22	2.3	22	82	3	57	50	18	6	26	1.69
46761523--46761692	40	4.3	40	87	2	200	24	21	28	25	1.99
46761470--46761692	80	2.8	79	81	3	223	24	21	28	25	1.99
46770680--46770722	22	1.9	23	90	4	70	25	2	48	23	1.62
46774661--46774703	18	2.4	18	81	14	61	46	4	9	39	1.57
46775169--46775238	27	2.5	28	90	2	115	27	12	27	32	1.93
46775169--46775252	27	3.0	27	84	5	87	29	11	23	34	1.91
46779134--46779173	12	3.3	12	96	0	71	27	47	0	25	1.52
46781010--46781088	37	2.1	37	90	0	122	25	31	18	24	1.98
46781207--46781617	47	8.7	47	97	0	750	29	30	8	32	1.86
46806025--46806067	22	2.0	22	86	9	61	62	9	0	27	1.25
46810836--46811007	93	1.8	93	88	0	263	27	29	20	22	1.99
46811329--46811875	273	2.0	274	98	0	1069	28	20	10	40	1.85
46816367--46816484	59	2.0	59	96	0	218	15	32	9	43	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46816842--46816893	25	2.1	25	100	0	104	48	17	11	23	1.79
46818741--46818911	93	1.8	93	91	0	279	28	28	21	22	1.99
46818733--46818908	46	3.8	46	79	12	189	28	28	20	21	1.98
46818784--46818927	46	3.1	44	76	15	132	29	27	20	22	1.98
46834134--46834218	24	3.5	24	79	3	89	29	27	16	27	1.97
46840644--46840740	47	2.1	47	92	0	158	27	21	15	35	1.94
46848066--46848974	46	19.7	46	96	2	1655	22	19	27	30	1.98
46851101--46851293	64	3.0	64	99	0	377	32	27	14	24	1.94
46852062--46852117	30	1.9	28	86	13	78	10	14	14	60	1.58
46852066--46852117	15	3.7	14	80	14	54	9	13	15	61	1.56
46854361--46854716	46	7.7	46	90	5	567	22	20	27	29	1.98
46861179--46861319	71	2.0	70	95	1	255	34	17	10	38	1.84
46865516--46865691	46	3.8	46	76	12	162	27	28	21	22	1.99
46865523--46865695	93	1.9	93	88	0	265	26	28	21	23	1.99
46876507--46876675	43	4.0	43	77	6	173	31	24	15	28	1.95
46877148--46877212	29	2.3	29	83	2	78	29	24	3	43	1.69
46877229--46877278	21	2.4	21	83	3	57	44	20	2	34	1.63
46883432--46883471	20	2.0	20	85	0	53	42	25	15	17	1.88
46892355--46892616	39	6.7	40	87	7	337	25	22	27	24	2.00
46899858--46900119	39	6.7	40	87	7	337	25	22	27	24	2.00
46904537--46904641	47	2.2	47	96	0	192	34	7	30	27	1.85
46905497--46905649	77	2.0	77	98	0	297	28	17	12	41	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46906619--46906723	38	2.8	38	79	5	106	31	19	23	25	1.98
46906751--46907026	40	6.9	40	90	0	417	22	23	27	25	2.00
46910809--46910913	47	2.2	47	94	0	183	35	7	29	27	1.85
46919180--46919258	38	2.1	39	97	2	151	16	24	27	31	1.96
46935203--46935350	48	3.1	48	92	0	242	29	22	8	38	1.85
46937616--46937659	23	1.9	23	85	0	61	45	11	6	36	1.67
46947290--46947368	37	2.1	37	90	0	122	25	31	18	24	1.98
46947491--46947652	47	3.4	47	91	1	234	27	30	9	32	1.88
46947618--46947963	173	2.0	172	96	3	642	34	24	6	33	1.82
46959942--46960118	40	4.5	40	90	4	254	24	23	28	24	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276