genome.fa.s12.2.7.7.80.10.50.1000.163.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  163  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53211963--53212060	28	3.5	28	76	5	108	28	13	28	29	1.94
53211966--53212125	56	2.9	56	81	7	164	28	16	27	27	1.97
53211987--53212149	28	5.8	27	78	8	132	29	17	28	24	1.97
53221883--53222162	50	5.7	50	76	8	245	24	28	19	26	1.99
53221891--53222158	95	2.8	97	81	6	276	25	28	19	27	1.98
53221881--53222162	145	1.9	148	82	3	356	24	28	19	26	1.99
53225054--53225112	27	2.2	26	85	5	82	15	23	23	37	1.93
53225255--53225389	6	22.3	6	76	10	132	19	20	14	46	1.83
53225230--53225368	61	2.3	61	91	2	217	20	19	13	46	1.83
53226258--53226412	43	3.6	42	78	6	152	28	14	24	32	1.94
53226940--53226971	16	2.0	16	100	0	64	31	6	25	37	1.81
53232235--53232267	17	2.1	16	88	11	50	48	3	0	48	1.17
53235787--53236186	49	8.3	49	93	3	625	33	8	29	28	1.87
53235766--53236186	96	4.4	96	93	3	616	33	8	29	28	1.87
53239564--53239602	19	2.1	19	100	0	78	48	15	20	15	1.81
53240910--53241011	43	2.4	43	80	12	122	27	14	23	34	1.94
53242301--53242441	60	2.4	59	85	9	180	26	20	26	26	1.99
53242339--53242451	28	3.9	28	71	18	97	27	20	26	25	1.99
53251664--53252629	28	34.5	28	99	0	1835	35	25	11	28	1.90
53253916--53254101	92	2.0	93	97	2	356	18	21	8	51	1.72
53260562--53260698	68	2.0	68	98	0	265	27	27	16	28	1.97
53260720--53260915	40	4.9	40	84	6	209	25	27	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53260847--53260924	40	1.9	41	82	10	97	26	28	20	24	1.99
53261954--53262059	54	2.0	54	98	0	203	23	21	24	30	1.99
53283099--53283757	87	7.6	85	80	10	626	27	14	20	37	1.92
53283342--53283376	14	2.5	14	95	0	61	25	11	0	62	1.28
53283438--53283467	15	2.0	15	93	0	51	20	13	10	56	1.65
53283099--53283757	177	3.8	172	83	7	718	27	14	20	37	1.92
53284703--53284757	23	2.4	23	85	8	69	34	3	3	58	1.33
53287483--53287536	15	3.7	15	75	20	51	61	18	12	7	1.54
53288744--53288777	17	2.0	17	88	11	52	44	26	0	29	1.55
53290542--53290685	49	2.9	50	80	5	175	27	27	20	25	1.99
53290981--53291012	16	2.0	16	93	0	55	40	18	0	40	1.51
53295376--53295481	55	1.9	54	98	1	203	39	7	6	46	1.58
53299902--53299930	2	14.5	2	100	0	58	48	0	51	0	1.00
53300215--53300254	19	2.1	19	100	0	80	17	10	5	67	1.37
53300534--53300567	14	2.5	14	85	4	52	47	0	14	38	1.45
53301071--53301121	27	1.9	27	88	4	77	52	0	0	47	1.00
53301164--53301208	19	2.4	19	79	20	58	31	2	2	64	1.18
53304779--53304876	23	4.3	23	90	2	162	31	26	21	20	1.98
53304786--53304874	45	2.0	45	95	0	160	31	26	22	19	1.97
53315468--53315608	43	3.1	43	85	9	158	21	17	31	29	1.97
53317267--53317557	40	7.3	40	89	0	449	23	20	26	29	1.99
53317267--53317554	80	3.6	80	96	0	524	23	20	27	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53322610--53322781	48	3.5	48	87	4	182	26	30	16	26	1.96
53322655--53322781	48	2.6	48	94	0	218	26	29	18	24	1.98
53324611--53324685	32	2.4	32	95	4	136	18	14	18	48	1.82
53326563--53327062	247	2.0	250	94	2	882	47	10	19	22	1.80
53327036--53327081	21	2.3	19	85	7	56	56	2	34	6	1.37
53327034--53327117	36	2.3	37	87	2	116	54	2	34	8	1.43
53327253--53327299	23	2.0	23	88	8	69	17	14	0	68	1.22
53327249--53327303	23	2.6	21	78	18	60	20	12	0	67	1.23
53347214--53347293	37	2.2	37	90	0	124	10	28	13	47	1.75
53355784--53355861	29	2.7	28	84	11	104	25	14	30	29	1.94
53355814--53356141	174	1.9	174	94	0	575	29	14	23	31	1.95
53358511--53358565	27	2.0	27	100	0	110	32	18	23	25	1.97
53375691--53375736	24	1.9	24	82	8	58	73	0	6	19	1.04
53386934--53387009	21	3.5	20	68	16	53	36	26	14	22	1.92
53386919--53387005	45	1.9	45	95	0	156	37	25	13	22	1.91
53388552--53388751	40	5.0	40	89	4	273	25	27	23	24	2.00
53403303--53403406	52	2.0	52	98	0	199	32	18	9	39	1.83
53404790--53404902	29	4.0	28	80	11	115	26	30	16	25	1.97
53405115--53405148	16	2.1	16	100	0	68	11	23	17	47	1.81
53405115--53405164	23	2.1	23	85	3	64	14	22	18	46	1.84
53405124--53405168	23	2.0	23	86	4	65	15	24	20	40	1.91
53412351--53412464	57	2.0	57	98	0	219	26	38	11	23	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53412601--53412675	29	2.6	29	82	0	87	25	32	21	21	1.98
53412856--53413690	65	12.8	65	99	0	1661	21	26	21	30	1.98
53433277--53433313	14	2.6	14	95	0	65	16	5	21	56	1.59
53449109--53449153	18	2.5	18	96	0	81	33	4	13	48	1.62
53455555--53455593	10	3.8	10	86	6	51	66	0	2	30	1.05
53455555--53455599	21	2.1	21	87	0	63	68	0	2	28	1.01
53455557--53455599	11	3.9	11	81	9	52	69	0	2	27	1.00
53455683--53455754	34	2.0	36	82	12	87	65	0	4	30	1.12
53455802--53455838	19	2.0	19	85	15	51	59	0	2	37	1.12
53457398--53457851	221	2.1	218	88	2	667	28	23	17	30	1.97
53457878--53457968	44	2.1	44	93	0	155	30	26	13	29	1.94
53458056--53458254	94	2.2	91	82	4	247	25	24	19	31	1.98
53458190--53458280	44	2.1	44	95	0	164	27	27	15	29	1.96
53457524--53458328	312	2.6	312	90	1	1254	28	22	17	30	1.97
53469354--53469420	20	3.3	20	87	0	98	31	13	22	32	1.92
53469470--53469587	23	5.0	24	90	5	170	27	20	22	29	1.98
53469471--53469566	47	2.1	46	94	2	165	28	19	20	31	1.97
53469780--53469843	31	2.1	31	90	0	101	39	15	23	21	1.92
53476093--53476252	82	2.0	82	94	0	284	33	6	33	25	1.83
53476348--53476514	84	2.0	84	97	0	316	15	34	4	44	1.68
53477642--53477708	20	3.3	20	87	0	98	31	13	22	32	1.92
53477758--53477875	23	5.0	24	90	5	170	27	20	22	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53477759--53477854	47	2.1	46	94	2	165	28	19	20	31	1.97
53478068--53478131	31	2.1	31	90	0	101	39	15	23	21	1.92
53486520--53486711	40	4.8	40	92	1	226	27	27	21	23	1.99
53489121--53489178	20	3.0	20	87	2	82	31	13	22	32	1.93
53489230--53489302	23	3.1	23	92	3	119	30	19	20	30	1.97
53489229--53489309	24	3.4	24	91	5	128	30	18	22	28	1.97
53489517--53489580	31	2.1	31	93	0	110	37	15	23	23	1.93
53490827--53490932	53	2.0	53	92	0	176	26	25	28	19	1.99
53492801--53493729	40	23.2	40	99	0	1797	22	20	29	27	1.98
53496385--53496567	79	2.3	81	84	7	232	24	22	27	25	2.00
53496386--53496569	40	4.6	40	83	9	216	23	22	28	25	2.00
53496438--53496602	79	2.1	79	84	6	210	25	21	27	25	1.99
53500753--53501053	40	7.6	40	80	4	288	27	22	25	24	2.00
53508941--53509156	40	5.4	40	80	5	213	26	23	26	24	2.00
53508941--53509201	80	3.3	80	80	3	267	26	23	26	24	2.00
53511677--53511709	17	1.9	17	93	0	57	57	0	6	36	1.23
53511676--53511732	26	2.1	29	87	9	84	64	0	5	29	1.15
53511791--53511878	37	2.3	37	80	7	97	62	1	3	32	1.19
53511949--53511985	19	2.0	19	85	15	51	59	0	2	37	1.12
53516092--53516139	11	4.0	11	80	19	60	43	8	10	37	1.69
53534744--53534779	8	4.5	8	92	0	63	41	19	25	13	1.88
53534979--53535095	29	4.1	29	88	2	157	29	13	29	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53534979--53535095	57	2.1	57	85	3	155	29	13	29	28	1.94
53538635--53538686	27	2.0	26	84	3	68	17	26	21	34	1.95
53538725--53538784	27	2.3	27	85	2	77	21	21	20	36	1.95
53548149--53548298	42	3.5	42	88	1	219	30	16	24	28	1.96
53554843--53554996	42	3.6	42	86	3	211	31	13	24	31	1.93
53556653--53556824	46	3.7	46	78	13	199	28	28	21	21	1.99
53556658--53556828	93	1.8	93	93	0	297	28	29	21	21	1.98
53583453--53583624	40	4.3	40	87	2	204	26	28	21	23	1.99
53583453--53583677	80	2.8	79	79	7	204	26	28	21	24	1.99
53583609--53583686	40	1.9	41	82	10	97	28	28	20	23	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276