genome.fa.s12.2.7.7.80.10.50.1000.187.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  187  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61566874--61566947	36	2.1	36	94	0	130	28	17	25	28	1.98
61566912--61567026	45	2.7	43	81	6	126	28	19	28	23	1.98
61571593--61571707	29	4.0	28	81	8	117	29	28	15	26	1.96
61571584--61571694	58	1.9	57	83	1	141	29	29	15	25	1.96
61571907--61571943	8	4.3	9	80	13	51	8	13	21	56	1.63
61571900--61571934	16	2.2	16	94	0	61	8	17	20	54	1.68
61578405--61578456	27	1.9	27	92	7	88	34	19	17	28	1.94
61584264--61584447	67	2.8	64	76	8	185	30	17	29	22	1.97
61586319--61586381	25	2.5	25	82	5	65	38	17	9	34	1.82
61590633--61590748	28	4.1	29	87	3	173	25	12	32	29	1.93
61608643--61608788	56	2.6	56	86	5	172	24	13	30	32	1.93
61608664--61608788	28	4.5	28	93	2	191	26	13	28	31	1.94
61622503--61622711	104	2.0	104	97	0	391	29	16	12	41	1.85
61625911--61625969	30	2.0	30	89	0	91	40	5	25	28	1.77
61630363--61630403	21	2.0	21	100	0	82	19	9	29	41	1.83
61632471--61632531	30	2.0	30	90	0	95	37	8	24	29	1.84
61632955--61633079	46	2.7	46	81	10	132	21	21	28	28	1.99
61636226--61636633	206	2.0	206	94	0	717	25	17	27	29	1.97
61640586--61640637	22	2.4	21	81	9	59	3	15	1	78	0.98
61640605--61640657	6	8.8	6	79	8	63	0	20	1	77	0.87
61640600--61640657	30	1.9	31	89	3	91	0	20	1	77	0.86
61653530--61654015	121	4.0	121	98	0	895	32	18	12	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61655134--61655242	37	2.9	37	95	0	191	26	31	19	22	1.98
61655389--61656197	48	16.8	48	98	0	1557	31	26	6	35	1.82
61656167--61656313	47	3.1	47	85	0	186	26	29	10	32	1.90
61660678--61660727	26	1.9	26	95	0	91	28	18	26	28	1.98
61665579--61665638	27	2.3	26	85	2	75	35	20	23	21	1.96
61666351--61666470	55	2.2	54	83	1	141	24	20	20	35	1.96
61666386--61666470	27	3.1	27	86	1	116	24	18	20	36	1.95
61666425--61666548	27	4.6	27	74	7	92	29	9	23	37	1.86
61667874--61667921	24	2.0	24	100	0	96	37	4	8	50	1.52
61674023--61674207	79	2.3	81	83	9	229	25	27	22	24	2.00
61674023--61674207	40	4.7	40	80	12	211	25	27	22	24	2.00
61681999--61682111	27	4.1	27	82	8	122	36	22	23	18	1.95
61692176--61692238	21	3.0	21	83	2	63	33	30	4	31	1.78
61699741--61699831	18	4.9	18	69	12	58	65	1	23	9	1.29
61701246--61701307	30	2.1	30	100	0	124	25	22	9	41	1.84
61709957--61710019	31	2.0	31	96	0	117	26	7	34	30	1.85
61710428--61710605	27	6.6	27	81	3	187	26	15	27	30	1.96
61710429--61710584	82	1.9	81	85	3	215	26	16	27	30	1.96
61710425--61710605	82	2.2	81	81	2	211	26	16	27	30	1.96
61715069--61715282	107	2.0	107	98	0	410	33	21	18	26	1.97
61717450--61717679	73	3.2	72	81	7	266	27	15	20	36	1.93
61717694--61717875	72	2.5	72	99	0	355	35	14	19	30	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61717537--61717829	157	1.9	157	81	1	354	30	14	20	34	1.92
61717838--61717940	52	1.9	53	94	3	181	29	20	24	26	1.99
61717766--61718007	133	1.9	128	84	10	323	33	17	19	29	1.95
61717892--61718212	79	3.8	79	74	18	258	30	18	18	32	1.95
61717889--61718305	86	4.9	87	79	12	418	29	17	18	34	1.94
61718201--61718230	13	2.3	13	94	0	51	16	10	6	66	1.41
61717889--61718305	172	2.4	171	86	4	567	29	17	18	34	1.94
61718937--61718986	19	2.8	18	77	19	59	40	48	2	10	1.48
61721155--61721322	41	4.2	40	72	13	146	28	27	20	23	1.99
61721200--61721302	40	2.5	40	87	4	136	27	28	20	24	1.99
61723861--61723925	29	2.2	30	78	8	71	40	4	1	53	1.31
61724419--61724483	24	2.7	25	73	20	66	33	7	4	53	1.50
61728686--61728755	32	2.2	32	92	0	113	44	15	20	20	1.87
61731553--61731600	25	1.9	25	86	0	69	35	22	14	27	1.93
61731644--61731681	20	1.9	20	100	0	76	34	13	21	31	1.91
61731733--61731823	23	4.0	22	92	2	128	25	20	20	32	1.97
61731732--61731847	24	5.0	23	86	6	146	26	20	22	30	1.98
61732041--61732104	31	2.1	31	87	0	92	39	14	21	25	1.91
61738575--61738622	25	1.9	25	91	0	78	33	20	29	16	1.95
61740661--61740708	16	2.9	16	80	17	62	50	0	0	50	1.00
61740661--61740711	18	3.0	18	86	11	72	50	0	0	49	1.00
61740679--61740717	18	2.2	18	86	4	53	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61741832--61741952	57	2.1	59	84	6	158	28	18	4	48	1.68
61750281--61750372	28	3.3	28	93	4	152	34	28	7	29	1.85
61750478--61750540	28	2.2	29	88	8	94	22	22	23	31	1.98
61750488--61750551	28	2.2	28	86	2	83	25	25	18	31	1.98
61758105--61758290	27	6.8	27	93	3	302	36	25	8	30	1.85
61758396--61758458	28	2.2	28	83	8	74	23	20	22	33	1.97
61768138--61768321	67	2.8	64	76	11	178	29	15	30	24	1.96
61782426--61782825	200	2.0	200	97	0	746	29	20	18	32	1.96
61783741--61783963	79	2.8	80	82	11	255	25	27	21	26	1.99
61783741--61783963	39	5.6	39	82	10	226	25	27	21	26	1.99
61794340--61794466	28	4.5	28	97	0	236	33	28	12	25	1.93
61798655--61798839	40	4.6	40	82	0	235	24	25	23	25	2.00
61813448--61813593	40	3.7	40	88	0	211	31	26	18	23	1.97
61814978--61815003	12	2.2	12	100	0	52	50	7	0	42	1.31
61815487--61815664	27	6.6	27	83	3	205	26	15	28	29	1.96
61815488--61815643	82	1.9	81	88	3	233	26	15	28	29	1.96
61815484--61815664	82	2.2	81	83	2	229	27	15	27	29	1.96
61821089--61821222	40	3.4	38	85	9	171	25	24	23	26	2.00
61821115--61821228	40	2.8	40	93	6	196	23	25	23	27	2.00
61830456--61830528	21	3.4	21	80	3	74	36	2	34	26	1.71
61837729--61837782	22	2.5	22	87	0	72	44	11	14	29	1.80
61841471--61841533	29	2.2	29	88	0	90	28	19	25	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61841471--61841554	29	2.9	28	78	8	87	29	16	26	27	1.97
61848781--61848863	29	2.9	29	83	0	94	27	21	20	30	1.98
61848825--61848886	29	2.2	29	88	2	90	30	20	24	24	1.99
61855849--61855922	31	2.4	31	88	2	105	29	28	14	27	1.95
61856807--61856892	27	3.1	27	77	11	93	36	9	15	39	1.79
61856894--61856993	27	3.7	27	82	4	139	28	8	23	41	1.82
61857013--61857072	27	2.3	27	80	8	70	40	11	23	25	1.88
61857025--61857116	27	3.4	27	83	0	112	40	9	21	28	1.85
61859473--61859675	31	6.5	31	98	0	397	28	25	17	29	1.97
61859699--61859790	42	2.2	42	90	0	139	34	21	13	30	1.91
61859927--61860007	25	3.2	26	82	6	87	23	23	22	30	1.99
61861032--61861106	27	2.8	27	83	0	87	41	6	20	32	1.78
61860851--61861235	208	1.9	208	100	0	770	34	16	20	29	1.94
61868795--61868908	43	2.7	42	78	5	131	28	18	22	29	1.97
61874469--61874503	18	1.9	18	88	0	52	48	2	20	28	1.63
61880519--61880750	48	4.9	48	72	11	190	25	18	25	30	1.98
61883145--61883236	28	3.3	28	87	0	130	21	17	33	27	1.96
61892251--61892591	27	12.7	27	78	6	334	39	19	9	31	1.84
61892251--61892591	108	3.2	107	84	5	377	39	19	9	31	1.84
61892569--61892634	27	2.4	27	85	5	80	40	21	13	24	1.89
61898826--61898934	42	2.6	42	75	15	116	25	16	23	33	1.96
61905750--61905844	43	2.2	43	81	5	113	28	16	24	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61906054--61906103	22	2.3	23	86	6	68	38	4	20	38	1.71
61906411--61906450	14	3.0	14	86	13	50	25	0	22	52	1.47
61909999--61910042	12	3.6	12	87	3	52	15	29	31	22	1.95
61913761--61913907	37	4.0	37	93	0	249	25	31	18	24	1.98
61914052--61914484	47	9.2	47	96	0	758	26	28	11	33	1.91
61914228--61914516	141	2.1	137	84	5	364	28	27	10	33	1.90
61918841--61918877	19	2.0	19	94	5	67	18	5	32	43	1.73
61919816--61919844	8	3.6	8	100	0	58	37	0	0	62	0.96
61919864--61919917	5	11.2	5	88	7	85	38	0	1	59	1.08
61919865--61919917	24	2.2	24	90	9	90	39	0	1	58	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276