genome.fa.s12.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  146  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47550810--47550974	64	2.7	60	79	15	158	59	1	8	30	1.38
47552744--47552777	3	11.7	3	87	6	52	29	0	2	67	1.05
47558586--47558765	58	3.1	58	98	0	342	46	10	22	20	1.81
47559515--47559569	23	2.4	23	81	3	67	34	0	0	65	0.93
47561895--47561986	40	2.3	40	88	3	132	38	23	19	18	1.93
47561912--47561986	39	1.9	38	94	2	123	41	25	18	14	1.89
47562669--47562718	21	2.3	21	80	12	57	16	0	48	36	1.46
47562669--47562724	14	3.9	14	76	4	58	17	0	44	37	1.49
47562684--47562724	21	2.0	21	85	9	57	19	0	39	41	1.52
47562950--47562998	25	1.9	26	87	4	73	18	0	44	36	1.50
47562973--47563022	22	2.3	21	80	12	57	18	2	46	34	1.60
47562570--47563176	304	2.0	304	99	0	1187	28	2	27	41	1.70
47564385--47564433	25	1.9	26	87	4	73	18	0	44	36	1.50
47564408--47564457	22	2.3	21	80	12	57	18	2	46	34	1.60
47565252--47565598	158	2.2	156	82	7	423	35	13	23	27	1.93
47567592--47567641	8	6.4	8	73	13	50	36	2	30	32	1.69
47568369--47568403	16	2.2	16	89	0	52	42	8	0	48	1.33
47568300--47568484	99	1.9	97	87	8	277	44	7	5	42	1.55
47568590--47568614	5	5.0	5	100	0	50	20	0	0	80	0.72
47568505--47568812	91	3.3	91	87	3	429	33	7	4	53	1.51
47568448--47568797	188	1.9	182	89	3	538	32	7	4	55	1.49
47568990--47569096	9	11.7	9	76	13	94	43	14	1	40	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47568996--47569096	18	5.5	18	76	13	107	44	13	1	39	1.56
47572709--47572953	49	4.9	49	84	3	328	28	27	18	25	1.98
47575819--47575848	9	3.3	9	100	0	60	53	20	0	26	1.46
47591341--47591369	14	2.1	14	93	6	51	34	0	10	55	1.34
47591778--47591839	21	2.9	22	74	13	67	33	20	43	1	1.62
47595803--47595837	14	2.5	14	86	13	54	22	5	14	57	1.59
47619781--47620101	48	6.7	48	78	3	324	26	19	30	23	1.98
47619781--47620104	96	3.4	96	81	2	373	26	19	30	23	1.98
47619770--47620101	144	2.3	144	84	2	425	26	18	30	24	1.98
47627161--47627215	21	2.6	21	85	0	65	14	27	30	27	1.95
47627742--47627990	50	5.1	50	73	8	208	25	20	29	25	1.99
47627768--47627990	95	2.3	97	87	3	308	25	20	29	25	1.99
47633870--47634131	39	6.7	40	88	7	337	24	27	22	25	2.00
47636798--47636976	50	3.6	50	83	5	179	23	28	18	29	1.98
47636752--47636976	48	4.6	49	76	13	205	24	28	18	28	1.98
47636752--47637022	48	5.6	47	75	13	169	25	28	18	28	1.98
47640613--47640654	14	2.9	15	78	7	50	61	0	2	35	1.09
47642076--47642112	13	2.7	14	84	16	51	8	0	18	72	1.08
47642397--47642482	44	2.0	44	92	0	145	24	25	22	27	1.99
47642821--47643156	178	1.9	178	88	1	503	26	26	19	28	1.98
47642964--47643063	44	2.2	45	81	11	125	31	25	17	27	1.97
47654912--47654953	14	2.9	15	78	7	50	61	0	2	35	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47655006--47655067	31	2.0	31	81	12	74	64	3	4	27	1.29
47676165--47676222	23	2.5	22	73	13	55	46	12	1	39	1.51
47682826--47682864	18	2.1	19	85	4	53	38	0	25	35	1.56
47684331--47684506	46	3.8	46	80	12	225	21	21	28	28	1.98
47684328--47684498	93	1.8	93	96	0	315	21	21	29	28	1.98
47687430--47687498	15	4.6	15	83	0	84	11	17	13	57	1.64
47687421--47687508	30	3.0	30	81	8	99	10	17	15	56	1.66
47689902--47690077	46	3.8	46	80	15	218	21	21	28	28	1.98
47689899--47690069	93	1.8	93	94	0	306	21	21	29	28	1.98
47706643--47706678	19	1.9	19	88	5	56	44	11	0	44	1.39
47706974--47707034	30	2.0	30	87	0	86	31	22	6	39	1.80
47710205--47710459	55	4.8	54	81	7	258	22	24	18	34	1.96
47717708--47717738	16	1.9	16	93	0	53	35	22	0	41	1.54
47717705--47717744	20	2.0	20	85	0	53	37	22	0	40	1.54
47717992--47718189	55	3.7	53	81	6	202	22	25	18	34	1.96
47720329--47720382	28	1.9	28	85	7	74	22	24	25	27	2.00
47721042--47721135	31	3.0	31	90	0	143	13	36	24	25	1.93
47724657--47724722	33	2.0	33	93	0	114	27	21	6	45	1.75
47735317--47735353	18	2.1	18	100	0	74	24	21	27	27	1.99
47742398--47742433	18	1.9	18	88	5	54	22	2	0	75	0.94
47742548--47742583	17	2.1	17	94	0	63	50	5	2	41	1.40
47742947--47742983	16	2.4	16	86	4	58	67	0	27	5	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47747544--47747591	21	2.2	22	85	7	62	25	25	35	14	1.94
47758519--47758579	17	3.5	17	72	16	54	31	1	1	65	1.12
47758550--47758590	16	2.6	16	88	3	57	34	2	0	63	1.08
47758662--47758915	84	3.0	84	86	1	364	39	9	20	30	1.84
47763143--47763256	44	2.6	43	80	14	135	22	19	28	29	1.98
47773166--47773344	85	2.1	85	98	0	349	26	26	8	38	1.85
47779608--47779671	32	2.0	32	81	6	76	39	18	4	37	1.72
47783208--47783264	15	3.8	15	76	13	55	61	0	1	36	1.07
47783211--47783264	22	2.4	22	77	20	58	61	0	1	37	1.07
47786256--47786298	17	2.6	16	82	17	52	72	6	2	18	1.19
47797103--47797144	13	3.2	13	86	0	57	7	30	38	23	1.82
47802789--47802966	27	6.6	27	83	3	205	26	15	28	29	1.96
47802790--47802945	82	1.9	81	88	3	233	26	15	28	29	1.96
47802786--47802966	82	2.2	81	83	2	229	27	15	27	29	1.96
47806152--47806206	24	2.2	25	90	3	85	30	14	9	45	1.76
47806152--47806213	24	2.6	24	87	5	72	29	12	11	46	1.77
47806930--47806954	12	2.1	12	100	0	50	40	16	24	20	1.91
47809606--47809651	24	1.9	24	86	8	67	17	0	28	54	1.43
47809763--47809814	15	3.5	15	75	14	54	19	0	32	48	1.49
47809678--47809993	157	2.0	158	89	1	483	31	0	23	43	1.60
47809933--47809983	24	2.1	25	85	10	70	15	0	33	50	1.44
47809886--47809969	16	4.8	16	70	18	60	14	0	34	51	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47809922--47809970	15	3.3	15	78	15	57	18	0	32	48	1.48
47809929--47809976	15	3.1	15	78	21	55	14	0	33	52	1.42
47809984--47810101	56	2.1	56	82	3	148	50	3	10	36	1.53
47810090--47810395	126	2.5	125	87	4	440	38	16	17	27	1.91
47823359--47823450	39	2.3	39	88	5	132	25	28	22	23	2.00
47823340--47823503	40	4.1	40	80	10	176	24	27	23	25	2.00
47825592--47825967	129	2.9	129	98	1	718	56	3	3	36	1.35
47826374--47826416	18	2.4	18	88	0	59	44	9	27	18	1.80
47828233--47828274	20	2.0	22	86	9	61	40	0	33	26	1.56
47828236--47828274	11	3.5	11	93	6	62	38	0	35	25	1.56
47828876--47829168	66	4.4	66	90	1	435	18	19	39	22	1.92
47829195--47829295	48	2.1	48	88	0	148	22	10	39	26	1.87
47830532--47830578	14	3.5	13	80	8	51	40	0	2	57	1.11
47832758--47832795	18	2.2	18	90	9	62	21	5	2	71	1.19
47840073--47840110	18	2.2	18	90	9	62	21	5	2	71	1.19
47843208--47843236	15	1.9	15	100	0	58	34	13	31	20	1.92
47848464--47848511	15	3.2	15	77	11	53	12	14	14	58	1.64
47853433--47853673	71	3.4	71	78	3	243	29	21	21	27	1.99
47853552--47853673	36	3.4	35	70	7	84	30	20	22	27	1.98
47859678--47859766	30	3.0	30	80	8	101	57	15	16	10	1.65
47859678--47859757	15	5.4	15	80	7	92	58	13	17	10	1.62
47859689--47859766	15	5.2	15	78	9	79	56	15	16	11	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47862199--47862326	46	2.8	46	91	0	202	27	30	22	19	1.98
47867013--47867180	46	3.6	45	83	10	198	22	30	20	27	1.98
47866865--47867183	94	3.4	92	76	10	249	23	30	19	26	1.98
47869336--47869372	15	2.5	15	86	0	56	10	37	10	40	1.75
47870937--47870989	16	3.2	16	89	2	79	67	5	5	20	1.32
47873758--47873935	94	1.9	94	84	4	243	35	16	23	23	1.95
47875925--47875957	17	1.9	17	100	0	66	27	6	6	60	1.44
47879772--47879805	17	2.0	17	100	0	68	29	5	5	58	1.45
47882616--47882656	19	2.2	19	90	0	64	53	2	2	41	1.27
47887342--47887388	23	2.0	23	100	0	94	46	12	12	27	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276