genome.fa.s12.2.7.7.80.10.50.1000.206.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  206  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68364393--68364759	184	2.0	184	97	0	698	25	20	15	38	1.92
68364859--68365093	118	2.0	118	99	0	461	28	9	23	37	1.87
68371550--68371638	40	2.2	40	95	0	160	29	28	19	23	1.98
68378987--68379158	46	3.7	45	77	13	170	21	20	28	29	1.98
68378981--68379151	93	1.8	93	87	0	252	21	21	28	29	1.98
68386563--68386734	46	3.7	46	73	14	165	22	19	27	30	1.98
68386560--68386730	93	1.8	93	88	2	263	22	19	28	29	1.98
68391962--68392049	27	3.3	27	87	4	88	37	22	20	19	1.94
68401954--68402029	21	3.5	21	70	16	64	22	13	26	38	1.91
68401958--68402045	45	2.0	45	95	0	158	22	12	26	38	1.90
68405889--68406019	65	2.0	65	95	0	235	42	16	13	26	1.86
68407573--68407603	15	2.1	15	100	0	62	58	0	0	41	0.98
68409189--68409327	40	3.5	40	93	3	226	25	30	23	20	1.98
68413151--68413280	40	3.3	39	82	3	152	25	20	28	26	1.99
68419011--68419129	63	1.9	63	92	0	202	29	23	20	26	1.99
68428650--68428679	11	2.7	11	100	0	60	60	10	0	30	1.30
68430221--68430261	21	2.0	21	85	4	57	43	17	24	14	1.86
68430282--68430402	60	2.0	60	90	0	188	35	18	21	24	1.95
68434520--68435388	216	4.0	216	99	0	1702	32	23	14	28	1.95
68438810--68438849	21	1.9	21	84	0	53	27	5	27	40	1.77
68442935--68442959	12	2.1	12	100	0	50	16	32	36	16	1.90
68444167--68444228	31	2.0	31	100	0	124	38	22	16	22	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68446390--68446594	30	6.8	29	79	5	169	22	23	12	40	1.88
68446372--68446561	60	3.2	59	75	8	195	22	24	13	40	1.89
68446399--68446615	120	1.8	119	89	3	346	23	24	12	40	1.89
68446399--68446594	60	3.3	59	74	7	189	22	23	11	41	1.87
68447999--68448075	38	2.0	38	89	0	118	38	14	22	24	1.91
68453675--68453756	41	2.0	41	100	0	164	26	21	31	19	1.97
68460942--68461114	93	1.9	93	95	0	310	27	31	21	19	1.98
68460935--68461110	46	3.8	46	81	10	214	28	30	21	19	1.97
68463031--68463115	15	5.8	14	77	8	71	57	16	16	9	1.64
68468279--68468499	38	5.8	38	91	3	331	21	22	26	30	1.99
68468492--68468573	43	1.9	43	94	0	146	13	25	32	28	1.93
68470228--68470282	29	1.9	29	88	3	85	38	25	14	21	1.92
68472450--68472573	43	2.9	43	83	3	135	21	18	30	29	1.97
68472491--68472624	51	2.9	45	80	13	155	23	17	30	28	1.97
68482910--68483042	46	3.0	46	76	14	181	42	9	14	34	1.77
68482889--68483022	39	3.2	40	77	15	153	41	9	14	35	1.78
68484987--68485080	40	2.4	39	84	5	118	35	38	13	12	1.83
68485005--68485081	40	1.9	40	91	0	127	36	35	14	14	1.86
68486953--68487047	42	2.3	42	88	0	136	23	36	22	17	1.95
68489682--68489844	30	5.5	29	77	9	141	27	26	12	33	1.92
68494800--68494861	25	2.4	26	76	10	65	67	4	6	20	1.32
68494848--68494898	6	8.5	6	82	0	57	74	5	1	17	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68494848--68494898	24	2.1	24	85	7	68	74	5	1	17	1.11
68502484--68502527	21	2.1	21	87	8	63	50	0	15	34	1.45
68515481--68515717	50	4.8	49	78	7	217	25	17	25	31	1.97
68515481--68515718	101	2.4	99	85	4	291	25	17	25	31	1.97
68519185--68519244	30	2.0	30	96	0	111	21	11	20	46	1.82
68524056--68524173	55	2.1	55	79	3	130	23	26	32	17	1.97
68528525--68528574	23	2.2	23	89	7	75	48	10	8	34	1.66
68529943--68529989	19	2.5	19	89	0	76	46	12	2	38	1.54
68533748--68533829	41	2.0	41	92	4	139	48	13	6	31	1.67
68533850--68533893	19	2.3	19	88	0	61	45	11	2	40	1.53
68533966--68534007	21	2.0	21	100	0	84	28	4	23	42	1.74
68536054--68536092	18	2.2	18	90	0	60	64	2	20	12	1.40
68545640--68545732	46	2.0	45	97	2	177	24	12	40	21	1.88
68546711--68546763	19	2.5	20	77	14	54	52	5	9	32	1.57
68550715--68550806	48	1.9	48	84	0	121	36	11	26	25	1.90
68568968--68569043	26	2.9	26	80	0	71	40	21	18	19	1.91
68569181--68569234	27	2.0	27	82	13	67	33	18	16	31	1.93
68570498--68570531	16	2.0	17	88	11	52	58	17	17	5	1.57
68582117--68582214	27	3.5	28	88	2	135	25	13	29	31	1.93
68582117--68582227	28	3.9	28	85	4	107	27	12	26	33	1.92
68584194--68584223	13	2.3	13	94	0	51	6	26	33	33	1.83
68596400--68596426	13	2.1	13	100	0	54	14	37	33	14	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68600944--68600969	7	3.7	7	100	0	52	11	0	0	88	0.52
68601940--68601969	15	2.0	15	100	0	60	33	13	13	40	1.83
68613597--68613634	16	2.4	16	90	0	58	18	15	21	44	1.86
68613605--68613636	16	2.0	16	100	0	64	18	25	18	37	1.94
68613608--68613644	16	2.3	16	90	0	56	27	29	13	29	1.94
68613845--68613889	24	1.9	23	82	13	56	64	17	4	13	1.44
68614791--68614824	14	2.3	15	90	5	52	32	0	8	58	1.29
68614755--68614810	3	17.3	3	80	10	58	30	3	1	64	1.21
68620790--68620838	20	2.5	20	79	0	62	16	40	24	18	1.90
68628480--68628549	12	5.8	12	74	22	51	77	7	0	15	0.98
68628479--68628542	14	4.9	14	71	22	50	76	7	0	15	1.00
68628479--68628544	31	2.2	30	86	8	89	77	7	0	15	0.98
68629623--68630259	177	3.6	177	87	1	886	31	21	20	26	1.98
68629635--68630280	353	1.8	352	87	1	909	30	21	21	26	1.98
68630991--68631043	20	2.5	22	78	9	65	13	5	5	75	1.16
68631844--68631882	3	13.3	3	83	5	53	33	2	0	64	1.08
68638140--68638276	38	3.6	38	82	2	166	35	27	18	18	1.94
68638140--68638286	78	1.9	78	83	5	192	35	27	17	19	1.94
68643912--68644018	31	3.1	33	73	20	103	37	6	18	37	1.77
68646747--68646827	40	2.0	40	90	0	126	34	33	13	18	1.90
68656278--68656313	18	2.0	18	88	0	54	47	0	2	50	1.15
68660279--68660348	24	2.8	24	82	8	79	34	8	21	35	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68660341--68660413	23	3.2	23	71	9	69	32	20	23	23	1.98
68680638--68680703	20	3.3	20	81	8	73	36	1	7	54	1.38
68684690--68684737	22	2.2	21	82	13	62	39	0	4	56	1.19
68684693--68684743	22	2.3	22	80	10	59	39	0	3	56	1.18
68687178--68687234	30	1.9	30	92	0	96	31	12	24	31	1.92
68687575--68687890	46	6.7	45	73	12	194	27	21	28	22	1.99
68688657--68688772	55	2.1	55	85	3	153	21	21	30	26	1.98
68689622--68689659	20	1.9	19	89	5	58	39	26	13	21	1.89
68700720--68700889	43	4.0	43	80	12	190	32	24	17	25	1.96
68700728--68700889	86	1.9	85	83	8	213	32	24	17	26	1.97
68701758--68701803	22	2.1	21	84	11	58	52	8	2	36	1.45
68719629--68719675	20	2.3	20	81	0	58	12	27	36	23	1.91
68720467--68720697	116	2.0	116	97	0	435	43	18	4	33	1.71
68720983--68721166	92	2.0	92	96	0	341	46	13	14	25	1.81
68726785--68726842	20	2.9	20	77	10	64	12	27	36	24	1.91
68727297--68727388	42	2.2	42	92	0	157	38	19	15	27	1.92
68729932--68730001	28	2.5	28	90	0	113	37	10	24	28	1.88
68732742--68732822	32	2.7	30	76	12	76	38	1	2	58	1.20
68738345--68738390	23	2.0	23	84	12	60	45	10	6	36	1.65
68738352--68738396	23	2.0	23	82	8	56	40	13	8	37	1.76
68743520--68743558	20	1.9	21	84	5	53	33	30	0	35	1.58
68754469--68754601	55	2.4	55	83	2	151	21	19	28	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68762898--68762936	21	1.9	20	94	5	69	33	10	25	30	1.89
68763109--68763147	16	2.6	15	88	11	62	53	0	0	46	1.00
68764893--68764926	14	2.6	13	86	13	52	55	0	0	44	0.99
68770639--68771086	205	2.2	205	94	0	770	28	21	19	30	1.98
68771231--68771355	61	2.0	64	89	7	195	36	12	17	32	1.88
68772431--68772471	7	6.0	7	78	16	50	0	14	0	85	0.60
68772439--68772471	10	3.3	10	91	0	57	0	12	0	87	0.53
68777826--68777878	23	2.4	22	76	20	56	9	18	1	69	1.25
68784984--68785039	24	2.4	23	72	3	58	21	3	33	41	1.70
68786817--68786855	12	3.0	13	85	11	53	74	5	5	15	1.17

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276