genome.fa.s12.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  114  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36164260--36164290	16	1.9	16	93	0	53	41	0	22	35	1.54
36178215--36178472	40	6.5	40	90	2	344	27	27	22	23	1.99
36179711--36179769	29	2.0	30	90	3	93	28	15	11	44	1.82
36187138--36187939	42	19.1	42	94	0	1415	31	21	21	26	1.98
36187138--36187939	84	9.5	84	99	0	1577	31	21	21	26	1.98
36194391--36195271	40	22.0	40	99	0	1717	30	25	24	20	1.99
36199951--36200006	15	3.7	15	83	7	78	12	16	8	62	1.53
36202403--36202576	46	3.8	46	76	10	174	21	19	28	30	1.98
36202400--36202570	93	1.8	93	88	0	261	21	19	29	29	1.98
36210806--36210837	16	2.0	16	100	0	64	12	6	50	31	1.65
36219609--36219813	40	5.1	40	83	4	211	26	26	20	26	1.99
36220617--36220775	80	2.0	80	97	0	300	40	26	8	24	1.84
36222066--36222254	40	4.7	40	92	0	306	25	27	21	25	1.99
36229023--36229085	33	1.9	33	84	15	87	28	26	20	23	1.99
36242385--36242425	21	1.9	22	85	5	57	41	21	2	34	1.67
36243616--36243654	18	2.2	18	86	9	53	48	0	5	46	1.24
36246520--36246636	43	2.7	42	92	2	189	31	13	27	27	1.94
36248603--36248640	20	1.9	20	84	10	51	31	5	7	55	1.51
36251581--36251965	27	14.2	27	86	1	437	29	21	8	41	1.81
36251581--36251965	81	4.7	81	83	1	482	29	21	8	41	1.81
36251554--36251965	54	7.6	54	86	1	527	29	21	8	40	1.82
36252201--36252252	27	2.0	26	84	3	68	17	26	21	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36252509--36252572	25	2.6	25	92	0	101	17	20	15	46	1.83
36252506--36252593	6	14.3	6	71	17	65	18	18	14	48	1.81
36255885--36256147	40	6.6	39	86	4	278	25	27	21	25	1.99
36255885--36256147	120	2.2	119	82	4	307	25	27	21	25	1.99
36256079--36256156	40	1.9	41	82	10	97	26	28	20	24	1.99
36263824--36264069	40	6.2	40	88	1	325	29	28	19	22	1.98
36266066--36266095	15	2.0	15	93	0	51	16	20	26	36	1.93
36266203--36266504	27	11.2	27	87	0	381	29	23	8	39	1.84
36266739--36266790	27	2.0	26	84	3	68	17	26	21	34	1.95
36266829--36266888	27	2.3	27	85	2	77	21	23	20	35	1.96
36267007--36267116	31	3.5	31	79	7	118	19	17	13	50	1.79
36267007--36267137	6	21.3	6	69	16	72	19	16	13	50	1.78
36267029--36267128	37	2.7	37	85	0	137	19	18	13	50	1.78
36268511--36268674	42	3.9	42	79	7	179	31	17	22	28	1.96
36270197--36270256	31	1.9	32	86	3	86	36	20	21	21	1.95
36271687--36271871	40	4.7	40	82	7	209	24	21	27	26	1.99
36271687--36271869	79	2.3	81	83	7	223	24	21	27	26	2.00
36271743--36271894	79	1.9	79	84	5	200	25	19	26	27	1.99
36277299--36277521	40	5.6	40	80	4	193	24	29	21	24	1.99
36292371--36292425	12	4.8	11	79	16	58	30	0	3	65	1.10
36292371--36292433	23	2.8	23	76	16	69	31	0	3	65	1.09
36293299--36293359	28	2.1	30	85	11	83	29	3	9	57	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36293481--36293513	11	2.9	12	86	13	52	66	0	0	33	0.92
36296284--36296432	42	3.5	43	71	11	119	33	23	14	28	1.94
36296356--36296448	43	2.2	42	82	1	105	36	23	13	25	1.92
36303028--36303061	18	1.9	18	88	5	52	38	11	35	14	1.83
36309365--36309389	13	1.9	13	100	0	50	56	20	0	24	1.43
36315455--36315782	164	2.0	164	98	1	640	43	12	20	23	1.86
36317449--36317626	27	6.6	27	83	3	205	26	15	28	29	1.96
36317450--36317605	82	1.9	81	88	3	233	26	15	28	29	1.96
36317446--36317626	82	2.2	81	83	2	229	27	15	27	29	1.96
36317531--36317637	27	3.9	27	85	1	70	26	14	28	30	1.95
36319067--36319665	300	2.0	300	97	0	1137	26	17	24	32	1.97
36321116--36321215	50	2.0	50	100	0	200	32	12	28	28	1.92
36325821--36326030	40	5.3	39	89	4	242	25	21	27	25	1.99
36325768--36326030	120	2.2	120	82	4	309	25	21	27	25	1.99
36325769--36326065	80	3.7	80	81	6	230	26	21	27	24	1.99
36353998--36354026	7	4.1	7	100	0	58	27	0	0	72	0.85
36381913--36382036	46	2.7	46	84	2	160	28	15	31	25	1.95
36391438--36391652	53	4.1	53	99	0	421	36	19	12	32	1.89
36396611--36396654	22	2.0	22	100	0	88	31	22	13	31	1.93
36401792--36401833	20	2.2	20	87	8	61	33	7	11	47	1.68
36403888--36403933	21	2.2	21	100	0	92	54	15	17	13	1.71
36406734--36406845	43	2.6	43	92	0	197	11	25	33	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36415053--36415236	40	4.6	40	83	6	230	25	23	26	24	2.00
36415053--36415236	80	2.3	80	87	3	255	25	23	26	24	2.00
36419169--36419213	10	4.2	10	78	15	54	84	0	15	0	0.62
36419171--36419211	9	4.6	9	85	8	57	87	0	12	0	0.53
36420884--36420963	37	2.2	37	86	4	108	27	31	17	23	1.97
36421094--36421391	47	6.4	47	88	1	413	26	31	10	32	1.89
36421136--36421422	141	2.0	140	82	6	350	27	31	9	32	1.88
36425853--36425889	20	1.9	18	89	10	56	40	5	5	48	1.49
36430487--36430682	53	3.7	52	72	7	133	22	23	17	36	1.95
36445006--36445319	158	2.0	158	95	0	565	25	22	22	29	1.99
36448774--36448926	29	5.3	29	88	3	213	33	25	11	29	1.91
36448774--36448926	57	2.7	58	88	4	213	33	25	11	29	1.91
36449080--36449118	19	2.1	19	95	0	69	41	12	10	35	1.77
36460011--36460116	53	2.0	53	98	0	203	21	26	27	24	1.99
36462055--36462361	40	7.6	40	81	6	273	26	20	26	26	1.99
36462102--36462363	84	3.2	81	83	6	302	26	20	26	25	1.99
36462130--36462396	79	3.3	79	76	9	218	27	20	26	25	1.99
36470277--36470499	40	5.6	40	82	6	204	24	20	28	27	1.99
36470277--36470501	80	2.8	79	81	7	233	24	20	28	27	1.99
36470353--36470499	79	1.9	80	88	1	224	23	19	28	27	1.99
36470352--36470534	79	2.3	80	80	1	208	25	20	28	26	1.99
36470277--36470534	119	2.2	120	80	4	281	25	20	28	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36473225--36473541	47	6.7	47	95	0	546	30	10	31	27	1.90
36473460--36473534	22	3.3	22	65	17	62	32	10	30	26	1.90
36476267--36476331	34	1.9	34	100	0	130	44	18	6	30	1.74
36478159--36478244	41	2.1	40	82	2	100	66	9	2	22	1.32
36479040--36479352	147	2.2	147	83	6	399	42	3	9	43	1.56
36480412--36480483	37	1.9	37	94	0	126	27	30	19	22	1.98
36480630--36480771	48	3.0	48	93	0	230	30	28	6	33	1.82
36483904--36484096	82	2.4	82	90	1	291	23	29	21	24	1.99
36483904--36484096	40	4.8	40	85	5	253	23	29	21	24	1.99
36488710--36488762	3	17.7	3	100	0	106	67	0	0	32	0.91
36489486--36489759	55	5.3	55	70	19	268	24	25	19	30	1.98
36489405--36489778	100	3.7	100	100	0	748	23	26	19	30	1.98
36490961--36491018	12	4.8	12	85	6	73	25	32	0	41	1.56
36490950--36491019	4	17.5	4	75	0	59	27	30	0	42	1.56
36491273--36491310	18	2.1	19	85	14	53	26	21	2	50	1.62
36499444--36499570	44	2.9	42	78	11	139	22	16	28	32	1.96
36499444--36499570	43	2.9	43	79	11	143	22	16	28	32	1.96
36504585--36504809	40	5.6	40	87	0	306	19	20	27	32	1.97
36510759--36510881	43	2.8	44	83	9	155	24	17	27	30	1.97
36518239--36518406	46	3.6	46	74	7	178	29	30	20	19	1.97
36518238--36518410	93	1.9	93	92	0	292	28	31	20	19	1.97
36518239--36518425	46	4.0	46	70	14	134	29	31	20	19	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36520917--36521027	49	2.3	49	81	7	138	24	26	19	29	1.99
36525473--36525597	49	2.6	49	76	3	128	23	30	19	27	1.98
36531903--36532121	49	4.6	49	73	9	184	26	27	17	27	1.98
36536207--36536258	23	2.3	23	83	9	63	63	3	11	21	1.43
36546236--36546341	55	1.9	55	90	3	169	30	8	23	37	1.85
36552340--36552431	16	6.0	15	77	18	75	81	13	3	2	0.90
36552373--36552403	8	3.9	8	100	0	62	77	22	0	0	0.77
36552341--36552406	8	8.2	8	81	9	55	81	15	1	1	0.83
36552355--36552428	8	9.1	8	76	16	55	82	12	4	1	0.87
36555510--36555719	40	5.3	39	76	8	167	25	20	27	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276