genome.fa.s12.2.7.7.80.10.50.1000.218.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  218  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72436127--72436181	15	3.9	14	81	15	69	47	1	1	49	1.23
72436163--72436199	10	3.7	10	85	0	56	54	0	0	45	1.00
72436201--72436320	55	2.1	59	86	6	167	46	0	0	51	1.12
72436499--72436550	16	3.2	16	77	0	59	34	26	0	38	1.57
72437346--72437385	20	2.0	20	85	14	55	45	0	0	55	0.99
72439849--72439899	18	2.8	18	88	5	68	5	37	0	56	1.23
72446667--72446692	13	2.0	13	100	0	52	15	23	15	46	1.83
72461344--72461531	40	4.7	40	95	0	331	21	27	20	30	1.98
72468396--72468889	247	2.0	247	98	0	961	31	25	19	23	1.97
72474261--72474360	50	2.0	50	94	0	173	38	14	21	27	1.91
72477597--72477621	7	3.6	7	100	0	50	48	0	0	52	1.00
72481567--72482390	93	8.9	93	99	0	1603	23	19	28	28	1.98
72488114--72488289	46	3.8	46	78	10	196	21	21	28	28	1.98
72488110--72488282	93	1.9	93	93	0	301	21	21	29	27	1.98
72492198--72492298	53	1.9	53	89	0	157	34	13	25	25	1.93
72492415--72492597	57	3.2	56	79	4	161	32	15	22	28	1.95
72492466--72492564	28	3.5	29	74	9	87	30	17	26	26	1.97
72492493--72492601	29	3.8	28	72	10	96	36	13	22	26	1.92
72492470--72492628	57	2.8	57	80	2	142	35	15	22	26	1.94
72500683--72500771	27	3.3	27	85	1	108	35	15	21	26	1.94
72500774--72500827	27	2.0	26	86	10	74	22	20	18	38	1.93
72501406--72501581	67	2.6	67	99	0	343	18	28	21	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72501582--72501641	27	2.3	27	85	2	77	21	23	20	35	1.96
72503768--72504063	42	7.0	42	83	3	369	30	14	24	30	1.95
72503768--72504065	85	3.5	84	82	3	366	30	14	24	30	1.95
72503768--72504059	127	2.3	127	93	0	485	30	14	24	30	1.95
72505643--72505700	30	1.9	30	89	0	89	32	10	25	31	1.89
72506093--72506209	46	2.5	46	87	5	164	27	20	30	21	1.98
72509523--72509547	13	1.9	13	100	0	50	60	16	0	24	1.36
72513799--72513876	29	2.7	28	84	11	104	25	14	30	29	1.94
72513829--72514156	174	1.9	174	96	0	611	30	14	24	30	1.95
72521935--72522144	40	5.3	39	87	5	233	24	21	28	25	1.99
72521882--72522144	120	2.2	120	81	4	300	25	21	27	25	1.99
72521935--72522179	80	3.1	80	81	3	228	25	21	28	24	1.99
72526156--72526213	30	1.9	30	85	0	80	31	10	27	31	1.90
72528956--72528985	15	1.9	16	93	6	53	36	16	0	46	1.47
72529107--72529204	42	2.3	42	78	13	112	35	23	15	25	1.94
72537050--72537099	26	1.9	26	95	0	91	30	18	28	24	1.97
72542510--72542732	39	5.7	40	85	8	266	25	22	27	24	2.00
72542510--72542732	79	2.8	81	84	9	282	25	22	27	24	2.00
72542510--72542765	79	3.3	79	81	10	217	26	21	27	24	1.99
72544945--72545221	40	6.9	40	91	0	430	26	19	28	24	1.99
72547452--72547810	47	7.6	45	73	12	228	22	28	20	28	1.98
72547452--72547814	141	2.6	138	79	10	344	22	28	20	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72547452--72547810	94	3.8	93	78	7	341	22	28	20	28	1.98
72552733--72553603	39	22.3	39	98	0	1620	27	20	28	23	1.99
72555816--72556691	40	21.9	40	97	0	1630	27	17	29	25	1.98
72558084--72558885	55	14.6	55	99	0	1595	25	29	21	23	1.99
72559732--72560551	44	18.6	44	100	0	1640	29	29	18	22	1.97
72564782--72565094	157	2.0	157	98	0	599	24	9	22	44	1.81
72566139--72566197	32	1.9	32	86	6	86	45	3	10	40	1.54
72574421--72574478	29	2.0	29	100	0	116	44	3	20	31	1.68
72579226--72579260	18	1.9	18	88	0	52	28	22	17	31	1.96
72584198--72584422	40	5.6	40	83	5	258	25	24	27	23	2.00
72584198--72584458	80	3.3	80	83	3	312	25	24	26	23	2.00
72584198--72584458	120	2.2	120	83	6	325	25	24	26	23	2.00
72592339--72592563	40	5.6	40	83	5	258	25	24	27	23	2.00
72592339--72592599	80	3.3	80	83	3	312	25	24	26	23	2.00
72592339--72592599	120	2.2	120	83	6	325	25	24	26	23	2.00
72597193--72597965	110	7.1	110	85	4	1037	32	21	12	32	1.91
72602262--72602399	40	3.5	40	89	6	185	24	23	28	23	1.99
72608820--72608894	38	2.0	38	91	0	123	48	9	16	26	1.76
72610719--72610767	25	1.9	26	87	4	73	75	0	8	16	1.03
72611079--72611103	13	1.9	13	100	0	50	8	40	36	16	1.77
72616605--72616803	6	32.3	6	71	16	131	50	14	17	17	1.78
72616626--72616769	37	3.9	37	81	4	148	51	14	18	15	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72616614--72616775	37	4.4	37	75	11	127	51	14	17	16	1.76
72616626--72616775	19	7.7	19	70	18	96	51	14	18	16	1.77
72616637--72616802	62	2.7	62	88	0	242	50	15	18	16	1.79
72616637--72616803	25	6.7	25	78	9	132	49	14	18	16	1.79
72616922--72616981	27	2.3	26	82	2	66	36	20	21	21	1.95
72617316--72617502	54	3.5	52	83	6	223	25	19	17	37	1.93
72617320--72617503	81	2.3	80	86	3	255	25	20	16	38	1.93
72617317--72617507	27	7.1	27	80	8	192	25	19	16	37	1.93
72617471--72617538	35	1.9	35	87	0	100	20	19	16	44	1.87
72617528--72617785	27	9.6	27	82	7	148	31	9	22	37	1.85
72617528--72617785	54	4.8	54	82	6	211	31	9	22	37	1.85
72617583--72617785	27	7.5	27	86	1	244	31	8	21	37	1.84
72617582--72617801	109	2.0	109	85	3	300	32	8	21	37	1.84
72637053--72637081	13	2.2	13	100	0	58	31	0	13	55	1.39
72639641--72640552	40	22.8	40	98	0	1684	20	20	30	29	1.98
72652776--72652836	30	2.0	30	83	0	77	31	22	8	37	1.84
72667902--72668015	43	2.7	42	75	12	124	28	15	22	32	1.95
72673774--72673831	30	1.9	30	92	0	98	20	39	27	12	1.88
72682059--72682134	38	2.0	37	94	2	134	32	26	18	21	1.96
72683239--72683289	19	2.7	19	75	3	59	72	0	9	17	1.11
72684132--72684158	13	2.1	13	100	0	54	22	33	29	14	1.94
72694485--72694548	8	6.9	9	78	16	60	18	3	1	76	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72694495--72694556	21	3.1	19	82	11	72	19	1	1	77	0.94
72694483--72694553	32	2.3	31	82	7	90	18	2	1	77	0.97
72694638--72694710	31	2.3	32	77	13	80	15	2	5	76	1.08
72695637--72695668	17	1.9	16	93	6	55	87	0	12	0	0.54
72698315--72698374	25	2.4	25	97	0	111	41	16	0	41	1.48
72704790--72704871	43	1.9	43	85	5	112	31	21	17	29	1.96
72704810--72704893	43	2.0	43	82	0	105	29	26	17	26	1.98
72714386--72714513	46	2.8	46	100	0	256	18	23	30	27	1.98
72721467--72721526	30	2.0	30	86	0	84	40	8	23	28	1.83
72721969--72722053	27	3.4	27	65	26	78	21	21	30	27	1.98
72721949--72722071	47	2.6	47	98	0	237	20	20	30	28	1.97
72726229--72726293	22	3.0	22	77	6	78	33	23	27	15	1.95
72728992--72729112	55	2.3	54	80	11	133	33	23	24	18	1.96
72729023--72729112	27	3.2	27	81	7	101	32	24	24	18	1.97
72729218--72729282	28	2.3	28	94	0	112	30	7	27	33	1.85
72736388--72736433	13	3.5	13	80	16	51	76	4	2	17	1.06
72736894--72736983	27	3.2	27	81	7	101	32	24	24	18	1.97
72737089--72737153	28	2.3	28	91	0	103	29	7	27	35	1.85
72738523--72738633	56	2.0	56	98	0	213	20	30	17	31	1.95
72739817--72739850	17	1.9	18	88	5	52	35	11	2	50	1.54
72742308--72742474	43	3.9	43	80	9	171	32	25	14	26	1.95
72750975--72751054	40	2.0	40	95	0	142	38	13	33	13	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72757469--72757518	26	1.9	26	83	0	64	36	22	22	20	1.96
72758394--72759472	542	2.0	542	98	0	2095	32	30	11	26	1.91
72759896--72759931	18	2.0	18	94	0	63	13	27	19	38	1.90
72760254--72760288	18	1.9	19	88	11	56	48	8	2	40	1.49
72762020--72762080	30	2.0	30	100	0	122	37	9	29	22	1.87
72762572--72762653	43	1.9	42	92	2	128	15	35	6	41	1.72
72776755--72776881	38	3.3	38	79	1	146	11	17	26	44	1.83
72778198--72779804	27	59.6	27	90	2	2243	40	21	7	30	1.82
72778925--72780277	27	50.3	27	94	1	726	38	21	12	27	1.89
72779762--72780251	134	3.7	135	89	1	718	34	20	20	24	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276