genome.fa.s12.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  103  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32576538--32576590	23	2.3	23	87	3	72	18	37	16	26	1.93
32576539--32576684	22	6.3	22	67	15	80	24	32	11	31	1.91
32576560--32576938	47	8.0	47	96	1	659	28	29	8	33	1.87
32581086--32581135	25	2.0	25	88	0	73	44	14	8	34	1.74
32582213--32582250	18	2.1	19	85	5	51	50	15	10	23	1.75
32585382--32585419	5	7.6	5	100	0	76	0	21	0	78	0.74
32586793--32586864	36	2.0	36	94	0	126	44	19	4	31	1.70
32587581--32587706	43	2.9	43	78	9	139	26	27	19	26	1.99
32590003--32590079	27	2.9	27	80	3	93	28	22	16	32	1.96
32595103--32595214	27	4.2	25	79	12	89	16	22	22	38	1.93
32595103--32595214	54	2.1	54	84	3	145	16	22	22	38	1.93
32602052--32602400	85	4.1	85	99	0	680	38	9	26	25	1.86
32603665--32605003	47	28.4	47	96	1	2070	31	9	30	28	1.89
32610652--32610726	22	3.3	22	65	17	62	32	10	30	26	1.90
32609804--32610733	47	19.7	47	98	0	1711	29	12	31	25	1.92
32613571--32613683	27	4.2	26	81	7	118	16	23	22	38	1.93
32614264--32614344	40	2.0	40	95	4	146	45	16	2	34	1.60
32622952--32623006	15	3.8	15	85	2	69	1	21	1	74	1.01
32641626--32641691	34	1.9	34	87	6	98	24	21	24	30	1.99
32646310--32646334	12	2.1	12	100	0	50	16	16	16	52	1.76
32647055--32647310	46	5.5	45	76	20	244	29	18	30	21	1.97
32647052--32647459	46	8.7	45	70	20	234	27	17	30	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32647052--32647269	93	2.3	93	100	0	436	29	18	30	22	1.97
32648933--32648974	23	1.9	21	85	9	57	26	21	21	30	1.98
32649905--32650000	27	3.6	27	90	4	149	27	12	17	42	1.85
32649907--32650036	27	4.8	27	82	3	145	26	16	17	39	1.91
32650367--32650417	18	2.8	18	87	0	66	19	21	9	49	1.77
32652550--32652673	43	2.9	42	78	7	144	32	16	23	28	1.96
32654550--32654638	46	1.9	46	86	0	124	22	31	12	33	1.91
32654655--32654730	22	3.3	22	66	28	59	25	28	11	34	1.91
32654632--32654943	47	6.6	47	91	0	482	26	29	10	33	1.90
32656940--32657088	75	2.0	74	94	2	264	38	10	33	16	1.84
32658154--32658276	28	4.4	28	88	2	167	26	12	27	33	1.92
32658154--32658276	55	2.2	57	86	2	169	26	12	27	33	1.92
32658179--32658289	28	4.0	27	88	3	89	29	11	25	33	1.91
32675079--32675325	55	4.7	52	78	10	202	21	24	18	36	1.95
32675118--32675314	108	1.8	110	87	4	301	22	25	16	34	1.95
32677273--32677368	48	2.0	48	100	0	192	37	14	16	31	1.89
32689972--32690156	79	2.3	81	85	5	243	25	27	22	24	2.00
32689953--32690156	40	5.1	40	80	8	220	25	26	22	25	2.00
32694508--32695031	126	4.2	126	89	1	762	27	19	18	34	1.95
32695140--32695315	96	1.8	98	86	4	259	40	14	1	43	1.55
32697139--32697163	13	1.9	13	100	0	50	32	4	24	40	1.73
32707715--32707741	13	2.1	13	100	0	54	14	37	33	14	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32713838--32713887	25	1.9	27	84	8	68	22	16	26	36	1.94
32713845--32713896	26	2.0	25	85	10	70	17	19	26	36	1.94
32713895--32714311	209	2.0	208	98	0	807	24	25	15	34	1.94
32714684--32714826	72	2.0	72	97	0	268	23	23	24	28	1.99
32715069--32716023	56	17.1	56	99	0	1892	48	8	23	19	1.77
32718986--32719139	77	2.0	77	97	0	290	20	12	33	32	1.91
32721414--32721590	88	2.0	88	97	0	336	40	20	7	31	1.80
32728245--32728354	42	2.6	42	79	4	114	29	18	21	30	1.97
32732777--32732932	47	3.3	47	90	0	240	28	30	8	32	1.88
32734375--32734453	37	2.1	37	88	0	113	25	30	18	25	1.98
32736244--32736413	40	4.3	40	85	1	207	23	21	30	24	1.99
32737284--32737428	73	2.0	73	93	0	245	40	15	25	19	1.90
32737688--32737838	78	1.9	78	98	0	293	35	12	24	27	1.91
32737969--32738069	47	2.1	47	96	0	184	29	28	8	32	1.88
32740347--32740491	48	3.0	48	87	0	227	31	25	5	37	1.79
32749010--32749085	38	2.0	38	97	0	143	31	14	22	31	1.94
32750275--32750419	40	3.6	40	84	4	184	26	24	25	23	2.00
32754727--32754867	40	3.5	40	89	2	205	25	25	23	25	2.00
32762804--32762939	40	3.4	40	84	3	177	24	25	24	25	2.00
32771351--32771384	13	2.7	13	95	4	61	47	0	5	47	1.26
32774381--32774421	16	2.6	16	84	0	55	17	4	17	60	1.52
32775625--32775686	18	3.3	19	74	14	56	67	1	1	29	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32775632--32775685	10	5.6	10	77	14	51	66	0	1	31	1.02
32776003--32776044	14	3.0	14	85	0	57	35	30	0	33	1.58
32780802--32780947	40	3.7	40	87	2	188	22	23	28	26	1.99
32787199--32787340	40	3.5	40	91	1	214	23	20	26	29	1.99
32787199--32787368	40	4.2	40	88	3	209	24	22	26	27	2.00
32787235--32787409	40	4.4	40	84	4	133	22	24	28	24	1.99
32799247--32799430	74	2.5	73	89	2	233	26	17	26	28	1.98
32799717--32800197	75	6.5	75	84	5	568	30	17	20	30	1.96
32801533--32801577	15	2.9	15	87	9	56	75	2	2	20	1.01
32801533--32801576	17	2.7	16	86	10	54	77	2	2	18	0.98
32803716--32803758	21	2.0	21	95	0	77	48	6	25	18	1.73
32807034--32807198	43	3.8	43	78	9	183	30	24	15	29	1.95
32807034--32807191	86	1.8	86	83	5	212	31	24	15	29	1.95
32812200--32812271	37	1.9	37	91	0	117	29	30	18	22	1.97
32812418--32812998	48	12.1	48	94	1	1004	30	27	6	35	1.81
32812418--32812998	239	2.4	240	95	0	1020	30	27	6	35	1.81
32816084--32816174	28	3.2	27	77	11	94	31	29	16	21	1.95
32816398--32816664	40	6.7	40	87	0	363	26	28	20	23	1.99
32816398--32816662	120	2.2	120	90	0	404	26	29	21	23	1.99
32818140--32818672	48	11.1	48	98	0	1003	29	27	6	36	1.82
32834226--32834303	28	2.7	29	80	11	81	26	29	16	26	1.97
32834226--32834303	29	2.7	29	76	11	81	26	29	16	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32834221--32834316	29	3.3	29	71	4	79	29	28	15	27	1.96
32834532--32834577	24	1.9	24	81	0	56	13	17	15	54	1.71
32838818--32838989	43	4.0	43	78	6	170	33	25	13	27	1.93
32850086--32850223	55	2.5	54	83	3	170	23	25	17	34	1.96
32850086--32850232	54	2.7	55	82	3	181	23	25	16	34	1.95
32850211--32850332	47	2.6	47	88	0	172	27	22	12	36	1.90
32855861--32855885	13	1.9	13	100	0	50	32	24	12	32	1.91
32858525--32858579	27	2.0	27	83	13	69	30	18	16	34	1.93
32858687--32858769	27	3.1	27	84	1	96	18	22	25	33	1.96
32858731--32858785	26	2.1	26	86	0	74	21	20	25	32	1.97
32861295--32861347	7	7.6	7	82	0	52	20	1	33	43	1.63
32861304--32861343	21	1.9	21	94	0	71	25	0	27	47	1.52
32867801--32867844	18	2.4	18	85	7	54	77	0	6	15	0.97
32867769--32867848	23	3.5	22	78	13	72	71	3	7	17	1.25
32875647--32875902	45	5.6	45	73	8	144	43	16	18	20	1.88
32875733--32875898	46	3.6	45	80	4	190	46	13	18	21	1.83
32875733--32875938	46	4.5	45	79	3	146	47	13	18	20	1.82
32883063--32883117	27	2.0	27	96	0	101	25	25	9	40	1.85
32885686--32885731	21	2.2	21	84	0	56	10	26	0	63	1.27
32890300--32890444	40	3.6	40	88	1	193	25	22	27	24	2.00
32890300--32890471	80	2.2	80	82	3	204	24	20	27	27	1.99
32892001--32892069	11	6.7	11	77	14	76	36	11	18	33	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32892013--32892069	20	2.8	20	100	0	114	36	10	19	33	1.86
32892117--32892212	25	3.8	26	91	4	160	27	25	22	25	2.00
32892117--32892212	51	1.9	50	93	2	165	27	25	22	25	2.00
32892440--32892515	31	2.5	31	86	2	109	32	18	25	23	1.97
32913467--32913735	47	5.7	47	76	7	201	28	18	28	24	1.98
32917485--32917706	83	2.8	81	84	8	305	26	28	22	22	1.99
32917485--32917706	40	5.6	40	84	9	285	26	28	22	22	1.99
32924389--32924499	48	2.4	45	78	13	118	28	17	28	25	1.97
32931779--32931920	40	3.6	40	90	2	198	26	27	23	23	2.00
32933285--32933310	13	2.0	13	100	0	52	61	7	0	30	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276