genome.fa.s12.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  155  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50416483--50416597	27	4.3	26	82	9	124	20	23	21	34	1.96
50417785--50417813	14	2.0	15	93	6	51	27	0	20	51	1.47
50421063--50421233	93	1.8	93	96	0	315	28	29	21	21	1.98
50421058--50421230	46	3.7	46	80	13	219	28	28	21	21	1.98
50421653--50421712	30	2.0	30	90	0	93	30	25	8	36	1.85
50428264--50428319	24	2.3	24	81	0	67	44	7	8	39	1.63
50428275--50428326	24	2.2	24	85	0	68	48	3	7	40	1.50
50431063--50431161	44	2.2	45	81	1	119	33	24	20	22	1.97
50442488--50442541	28	2.0	28	92	3	92	33	27	11	27	1.91
50442777--50442846	27	2.6	26	95	2	95	31	28	12	27	1.93
50442777--50442871	28	3.4	28	89	2	129	32	28	12	26	1.93
50457757--50458470	105	6.8	104	81	4	722	34	16	18	30	1.93
50457757--50458470	210	3.4	209	83	3	803	34	16	18	30	1.93
50457851--50458461	315	1.9	314	85	1	848	34	16	18	30	1.93
50459904--50460110	40	5.2	40	88	2	265	28	28	19	22	1.98
50465793--50465824	7	4.6	7	100	0	64	71	12	15	0	1.14
50467976--50468023	24	2.0	24	95	0	87	35	20	27	16	1.94
50468946--50469020	37	2.0	37	89	0	114	41	8	20	30	1.81
50474506--50474563	4	13.8	4	76	16	55	22	5	1	70	1.16
50474525--50474560	17	2.1	17	90	10	56	22	2	2	72	1.11
50474521--50474608	21	3.9	21	73	22	63	20	4	3	71	1.18
50479490--50479556	25	2.6	25	79	9	64	23	8	5	61	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50483361--50483396	19	1.9	19	94	5	65	41	2	11	44	1.54
50490555--50490579	9	2.8	9	100	0	50	24	8	12	56	1.62
50492032--50492203	43	4.0	43	73	8	152	24	16	26	32	1.96
50496289--50496352	24	2.6	25	87	4	87	32	31	15	20	1.94
50496376--50496425	24	2.1	24	88	0	73	32	30	12	26	1.92
50496381--50496662	94	3.0	94	97	0	528	39	19	10	30	1.86
50504115--50504178	24	2.6	25	87	4	87	34	32	15	17	1.91
50504202--50504251	24	2.1	24	81	7	57	34	28	10	28	1.89
50504207--50504676	94	5.0	94	98	0	886	40	19	10	30	1.85
50528080--50528194	45	2.6	45	95	1	214	21	21	28	27	1.99
50529316--50529351	17	2.1	17	100	0	72	30	16	5	47	1.70
50529721--50529851	66	2.0	66	84	3	174	27	19	16	37	1.92
50529787--50530002	93	2.3	94	79	6	240	30	13	12	43	1.81
50534990--50535077	30	3.0	30	93	1	142	23	42	15	18	1.89
50539231--50539407	40	4.4	40	85	4	234	23	22	27	25	2.00
50539634--50539675	22	1.9	22	85	9	59	33	9	14	42	1.78
50543120--50543148	14	2.1	14	100	0	58	44	20	6	27	1.77
50544033--50544179	38	3.6	38	75	18	152	29	25	15	28	1.96
50551210--50551249	20	1.9	20	85	10	53	47	10	15	27	1.77
50551823--50551960	39	3.5	39	80	0	150	44	20	5	28	1.74
50555563--50555596	18	1.9	18	88	5	52	29	17	11	41	1.85
50556861--50556963	28	3.7	28	84	5	136	26	32	16	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50556845--50556963	56	2.1	57	84	4	152	23	31	15	29	1.96
50560208--50560405	42	4.7	42	81	3	245	27	18	25	28	1.98
50566693--50566736	23	1.9	23	85	0	61	61	6	2	29	1.34
50569968--50570314	114	3.1	113	85	0	453	35	13	22	27	1.93
50575275--50575440	46	3.6	46	79	9	133	22	27	21	28	1.99
50582313--50582372	16	3.8	16	75	16	54	1	23	3	71	1.10
50582318--50582371	26	2.1	25	83	10	65	1	22	3	72	1.10
50585357--50585399	22	2.0	21	90	4	68	74	9	9	6	1.22
50585362--50585409	22	2.2	22	84	0	60	70	8	14	6	1.31
50591078--50591110	15	2.1	16	88	5	50	60	6	0	33	1.21
50596881--50597030	67	2.2	67	81	8	171	32	17	28	21	1.96
50596905--50597088	67	2.8	64	77	8	194	29	17	29	22	1.97
50599562--50599859	149	2.0	149	99	0	587	30	24	9	34	1.88
50600024--50600248	48	4.7	48	88	1	290	26	32	16	24	1.96
50600676--50600714	9	4.3	9	93	0	60	33	7	0	58	1.26
50600678--50600712	3	11.7	3	93	0	61	34	2	0	62	1.10
50603458--50603633	45	4.0	45	86	3	216	25	21	26	26	1.99
50610961--50611049	43	2.1	43	93	0	151	49	4	21	24	1.68
50611110--50611285	45	4.0	45	90	5	243	23	21	28	26	1.99
50613540--50613583	22	2.0	21	91	4	70	40	18	4	36	1.71
50616313--50616438	48	2.6	48	91	0	207	26	31	16	24	1.96
50616318--50616481	48	3.4	48	85	2	168	25	31	18	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50619089--50619122	18	1.9	17	88	5	50	76	2	2	17	1.04
50627566--50627603	19	2.0	19	89	0	58	60	28	2	7	1.38
50628363--50628424	32	1.9	32	87	6	90	14	35	25	24	1.93
50629823--50629856	17	1.9	17	88	5	50	20	2	0	76	0.92
50630879--50630929	25	2.0	25	84	0	66	74	7	13	3	1.18
50633344--50633369	8	3.2	8	100	0	52	61	0	38	0	0.96
50644770--50644843	32	2.4	30	80	8	87	43	4	10	41	1.58
50645998--50646039	22	1.9	22	100	0	84	23	9	52	14	1.71
50650428--50650457	15	2.0	15	93	0	51	20	23	13	43	1.86
50655949--50656120	94	1.8	94	88	0	263	21	18	29	30	1.97
50659718--50659811	48	2.0	48	93	0	161	42	11	18	27	1.85
50662443--50662618	46	3.8	46	76	11	189	19	19	28	31	1.97
50662439--50662611	93	1.9	93	91	2	285	20	19	29	30	1.97
50665025--50665247	79	2.8	78	83	7	272	24	27	22	25	2.00
50665025--50665247	39	5.7	40	87	6	280	24	27	22	25	2.00
50673139--50673206	29	2.3	29	85	5	93	27	30	13	27	1.94
50673028--50673354	174	1.9	174	97	0	618	30	24	14	29	1.95
50673308--50673384	29	2.6	29	82	12	95	28	28	15	27	1.96
50676211--50676250	8	4.8	9	79	17	50	47	22	22	7	1.76
50676215--50676249	8	4.4	8	88	0	52	48	20	22	8	1.76
50676211--50676257	16	2.9	16	90	3	67	46	21	23	8	1.78
50676207--50676257	24	2.1	24	82	7	59	50	19	21	7	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50676468--50676582	29	4.0	28	84	2	113	27	17	26	27	1.98
50680840--50680883	8	5.5	8	80	0	52	45	18	25	11	1.82
50680840--50680883	16	2.8	16	89	0	61	45	18	25	11	1.82
50681092--50681191	29	3.5	28	80	4	103	29	14	26	31	1.94
50681105--50681215	58	1.9	57	85	1	150	27	15	27	28	1.96
50690640--50690814	48	3.6	48	91	0	278	25	29	20	25	1.99
50690640--50690836	96	2.1	96	87	0	277	24	28	21	24	1.99
50694353--50694453	37	2.7	37	85	0	121	29	28	15	25	1.96
50694557--50694585	14	2.0	15	93	6	51	27	0	20	51	1.47
50695665--50695792	45	2.8	45	87	0	175	25	13	26	34	1.93
50695695--50695826	45	3.0	44	81	6	135	23	15	26	34	1.95
50697077--50697104	12	2.3	12	100	0	56	42	7	10	39	1.67
50700598--50700769	48	3.7	48	84	4	203	25	29	20	24	1.99
50700518--50700779	48	5.9	42	73	13	170	25	28	19	25	1.99
50701977--50702060	22	4.1	22	71	26	85	41	20	7	30	1.79
50703553--50703788	29	8.1	29	82	4	253	21	26	13	38	1.91
50703553--50703779	86	2.6	87	83	5	282	21	26	13	38	1.90
50707589--50707746	43	3.7	42	76	11	124	31	25	18	24	1.97
50713370--50713434	28	2.3	28	91	0	103	32	27	7	32	1.85
50713540--50713613	27	2.7	27	81	6	96	18	27	24	29	1.98
50714093--50714131	19	2.1	19	85	0	51	15	5	7	71	1.26
50714715--50714748	10	3.3	10	84	8	50	29	8	8	52	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50721184--50721248	28	2.3	28	91	0	103	32	27	7	32	1.85
50721354--50721443	27	3.2	28	81	7	112	18	24	24	32	1.97
50721364--50721454	27	3.2	28	81	4	94	20	26	20	31	1.98
50721354--50721468	55	2.1	56	82	8	137	18	24	22	34	1.96
50722530--50722563	10	3.3	10	84	8	50	29	8	8	52	1.62
50723664--50723734	23	3.2	21	62	14	52	21	12	35	30	1.91
50726844--50726868	12	2.1	12	100	0	50	64	8	0	28	1.22
50728579--50728698	60	2.0	61	85	6	163	26	25	20	27	1.99
50728579--50728727	60	2.5	59	80	9	151	25	24	21	28	1.99
50728720--50728765	20	2.3	20	82	14	60	28	28	17	26	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276