genome.fa.s12.2.7.7.80.10.50.1000.248.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  248  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82185215--82185246	16	2.0	16	100	0	64	56	12	6	25	1.59
82194367--82194391	11	2.3	11	100	0	50	72	0	0	28	0.86
82194661--82194719	31	1.9	30	83	10	75	28	22	3	45	1.68
82195615--82195649	18	2.0	18	88	5	54	31	20	2	45	1.65
82200313--82200361	7	7.0	7	100	0	98	28	0	0	71	0.86
82200310--82200387	7	9.9	8	86	10	76	32	0	0	67	0.90
82200612--82200644	14	2.3	15	89	5	50	15	3	39	42	1.62
82200668--82200844	66	2.7	65	77	9	182	24	1	30	42	1.65
82201508--82201593	40	2.1	40	81	10	104	25	23	18	32	1.97
82202788--82202930	72	2.0	72	85	0	196	37	16	27	18	1.93
82211236--82211496	130	2.0	131	97	0	497	37	16	21	24	1.93
82215829--82215853	13	1.9	13	100	0	50	40	0	28	32	1.57
82218370--82218434	21	3.1	22	73	10	64	66	0	33	0	0.92
82219449--82219505	22	2.6	22	86	2	71	24	12	33	29	1.92
82229884--82230005	60	2.0	61	90	1	192	36	10	30	22	1.88
82231458--82231621	51	3.2	51	93	0	283	35	12	21	31	1.90
82231458--82231673	102	2.1	99	81	13	237	36	12	21	29	1.90
82232499--82232538	17	2.4	17	87	8	55	67	7	25	0	1.16
82245316--82245356	21	2.0	21	85	0	55	9	29	9	51	1.67
82257773--82257797	11	2.3	11	100	0	50	56	16	0	28	1.41
82265241--82265295	21	2.7	21	91	5	87	16	27	14	41	1.87
82265472--82265519	20	2.4	20	86	6	62	43	6	27	22	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82267018--82267117	39	2.5	40	82	6	116	32	8	13	47	1.71
82267039--82267138	39	2.5	40	81	10	109	29	8	13	50	1.69
82269385--82269445	29	2.1	29	84	3	79	29	14	6	49	1.69
82270556--82270609	21	2.6	21	81	0	63	11	3	20	64	1.40
82271519--82271583	33	2.0	33	84	6	87	55	7	4	32	1.49
82272513--82272568	23	2.3	23	81	6	58	50	8	5	35	1.57
82272784--82272810	14	1.9	14	100	0	54	92	0	7	0	0.38
82273629--82273666	3	12.7	3	94	0	67	63	2	0	34	1.09
82274168--82274277	28	4.0	28	67	19	70	20	4	30	43	1.72
82274728--82274774	14	3.4	14	76	8	51	53	14	2	29	1.53
82275836--82275914	37	2.1	37	90	0	122	25	31	18	24	1.98
82276035--82276161	47	2.7	47	83	2	157	27	31	9	31	1.88
82285481--82285653	46	3.7	46	80	13	219	21	21	28	28	1.98
82285478--82285648	93	1.8	93	96	0	315	21	21	29	28	1.98
82292631--82292904	137	2.0	137	94	2	480	32	18	25	23	1.97
82292891--82293013	46	2.6	47	82	13	148	21	20	29	28	1.98
82294286--82294456	29	5.9	29	95	0	281	25	14	29	30	1.94
82295381--82295444	21	3.3	21	64	28	59	45	17	10	26	1.81
82295378--82295452	37	2.0	37	100	0	150	46	16	10	26	1.79
82298577--82298706	47	2.8	44	75	12	136	26	20	29	23	1.99
82298581--82298844	46	5.6	46	72	11	173	27	20	28	23	1.99
82305162--82305197	18	2.0	18	100	0	72	38	22	5	33	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82305746--82305777	15	2.1	15	100	0	64	28	18	6	46	1.73
82307118--82307550	27	16.0	27	80	2	451	27	21	9	41	1.84
82307126--82307551	108	3.9	108	84	3	527	27	20	9	41	1.84
82307567--82307735	27	6.3	27	86	0	248	36	20	20	23	1.95
82307954--82308036	27	3.1	26	87	5	112	19	21	21	37	1.94
82308124--82308182	22	2.7	22	81	0	64	20	25	22	32	1.98
82308347--82308415	27	2.6	27	86	4	86	21	24	17	36	1.95
82307967--82308796	380	2.2	380	95	0	1491	20	21	23	34	1.96
82308727--82308800	27	2.8	25	84	10	85	17	24	21	36	1.95
82308918--82309019	6	16.8	6	77	17	104	19	16	14	49	1.80
82308918--82309019	30	3.4	30	90	6	161	19	16	14	49	1.80
82311040--82311464	27	15.7	27	81	3	390	28	20	8	42	1.81
82311054--82311469	108	3.9	108	85	3	507	28	21	8	42	1.81
82311485--82311599	27	4.3	27	86	0	167	36	21	20	21	1.95
82311818--82311872	27	2.1	26	89	3	83	18	21	23	36	1.95
82311838--82311900	27	2.4	26	81	5	72	22	20	17	39	1.92
82311988--82312046	22	2.7	22	81	0	64	20	25	22	32	1.98
82312211--82312284	27	2.8	25	84	10	85	17	24	21	36	1.95
82312402--82312588	6	30.8	6	76	16	181	19	17	14	48	1.82
82312402--82312588	85	2.2	85	98	0	356	19	17	14	48	1.82
82312402--82312588	30	6.4	30	85	11	262	19	17	14	48	1.82
82314604--82314957	27	13.1	27	82	3	372	27	22	9	40	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82314966--82315161	54	3.6	54	88	1	270	36	18	19	25	1.95
82314974--82315132	27	5.9	27	87	0	237	36	19	20	23	1.95
82314974--82315159	27	6.9	27	84	3	205	36	18	20	25	1.95
82315359--82315441	27	3.1	26	86	5	112	20	22	20	36	1.95
82315529--82315587	22	2.7	22	81	0	64	20	25	22	32	1.98
82315752--82315818	27	2.5	27	85	4	82	19	25	19	35	1.95
82315943--82316044	6	16.8	6	78	13	111	19	17	14	48	1.82
82315943--82316044	30	3.4	30	93	1	168	19	17	14	48	1.82
82317980--82318272	50	5.8	50	74	5	225	27	17	25	29	1.97
82318035--82318217	101	1.8	101	84	2	251	30	19	22	28	1.98
82318470--82318499	16	1.9	15	93	6	51	43	0	23	33	1.54
82324181--82324212	16	1.9	17	93	6	57	43	6	18	31	1.75
82336111--82336272	45	3.6	45	86	0	207	33	27	16	22	1.95
82336823--82336853	15	2.1	15	93	0	53	54	25	0	19	1.44
82340907--82340945	20	1.9	20	84	5	51	28	12	10	48	1.74
82354353--82354427	38	2.0	38	86	5	107	30	18	26	24	1.98
82354481--82354868	40	9.7	40	87	0	535	23	22	28	25	1.99
82358315--82359311	49	20.6	49	96	1	1793	32	8	28	29	1.86
82367380--82367504	49	2.6	49	76	2	135	22	27	21	28	1.99
82367536--82367690	48	3.3	47	81	8	181	23	26	19	30	1.98
82378087--82378164	29	2.7	28	84	11	104	25	14	30	29	1.94
82385900--82385926	12	2.2	12	100	0	54	51	7	0	40	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82386414--82386591	27	6.6	27	83	3	205	26	15	28	29	1.96
82386415--82386570	82	1.9	81	88	3	233	26	15	28	29	1.96
82386411--82386591	82	2.2	81	83	2	229	27	15	27	29	1.96
82391743--82391785	19	2.3	18	80	4	50	20	13	4	60	1.51
82393136--82393440	151	2.0	151	97	0	574	36	13	23	26	1.92
82395988--82396258	49	5.6	49	78	11	270	26	19	30	22	1.98
82395986--82396258	98	2.8	98	86	5	365	26	19	31	22	1.98
82402582--82402611	14	2.1	14	100	0	60	36	6	16	40	1.75
82403665--82403960	49	6.2	49	72	12	188	27	17	29	25	1.97
82403717--82403960	93	2.6	97	84	8	281	27	17	29	25	1.97
82403660--82403935	142	1.9	142	86	1	392	26	17	29	26	1.98
82409919--82409950	12	2.6	13	85	14	50	68	3	0	28	1.04
82409914--82409967	20	2.4	24	77	22	64	61	3	0	35	1.14
82412552--82412591	21	1.9	21	94	0	71	20	20	35	25	1.96
82426882--82427059	27	6.6	27	83	3	205	26	15	28	29	1.96
82426883--82427038	82	1.9	81	88	3	233	26	15	28	29	1.96
82426879--82427059	82	2.2	81	83	2	229	27	15	27	29	1.96
82431320--82431352	5	6.6	5	100	0	66	81	0	0	18	0.68
82434252--82434347	48	2.0	48	97	0	183	32	18	21	27	1.97
82439421--82439458	19	2.0	20	85	15	53	36	0	23	39	1.55
82439571--82439801	48	4.9	48	73	7	222	28	23	21	26	1.99
82447714--82447893	40	4.5	40	80	8	181	25	21	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82447762--82447916	79	2.0	79	82	7	190	26	20	26	27	1.99
82451664--82451786	56	2.2	56	86	0	165	29	15	21	34	1.94
82455237--82455331	48	2.0	48	87	4	138	23	17	28	30	1.97
82455255--82455374	48	2.5	48	79	5	118	26	19	26	27	1.99
82460761--82461662	450	2.0	450	93	0	1554	33	12	20	33	1.90
82462211--82462347	48	2.9	48	82	6	152	27	17	27	28	1.98
82467640--82467753	43	2.7	43	75	17	103	35	23	12	28	1.91
82473594--82473837	78	3.1	78	100	0	488	32	21	14	31	1.94
82475259--82475639	51	7.6	50	82	8	461	32	24	17	25	1.97
82475259--82475639	101	3.8	101	98	0	719	32	24	17	25	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276