genome.fa.s12.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  106  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33611354--33611462	24	4.4	24	74	13	80	67	2	2	26	1.17
33611505--33611560	19	2.8	20	78	10	60	69	3	5	21	1.24
33611505--33611560	20	2.8	20	79	17	62	69	3	5	21	1.24
33611485--33611568	20	4.2	20	70	19	59	66	3	4	25	1.27
33611837--33611898	24	2.5	26	80	10	69	27	6	0	66	1.16
33611877--33611910	15	2.3	15	89	0	50	29	0	0	70	0.87
33612002--33612044	19	2.3	19	80	4	52	27	2	0	69	1.00
33616362--33616453	39	2.4	39	84	0	112	29	19	21	29	1.98
33618254--33618496	81	3.0	81	99	0	477	39	9	16	34	1.82
33619851--33620099	122	2.0	122	88	5	378	38	12	15	33	1.85
33621966--33622131	50	3.3	50	92	0	269	34	14	23	27	1.93
33622114--33622231	31	3.8	31	88	0	173	27	17	28	26	1.98
33622251--33622366	47	2.5	46	82	1	124	30	15	25	29	1.96
33622300--33622429	49	2.7	48	85	5	167	26	13	28	31	1.93
33622381--33622461	42	1.9	42	84	0	108	29	12	25	32	1.92
33624589--33624642	27	2.0	27	92	0	90	37	11	12	38	1.79
33628469--33628500	12	2.8	11	90	9	55	25	0	37	37	1.56
33630525--33630922	30	13.3	30	99	0	769	26	49	3	20	1.65
33639512--33639687	71	2.5	70	83	1	210	28	14	22	34	1.94
33639706--33640119	149	2.7	150	87	5	591	33	15	20	31	1.93
33639701--33640685	226	4.5	225	72	17	632	30	15	20	33	1.93
33639706--33640124	77	5.5	76	89	4	580	33	15	20	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33640009--33640373	127	2.8	126	77	10	346	27	15	22	35	1.94
33640425--33640726	77	4.0	77	80	10	322	30	15	20	33	1.94
33640425--33640726	148	2.0	151	85	6	416	30	15	20	33	1.94
33640821--33641579	71	10.3	71	87	8	988	28	16	18	35	1.93
33641556--33641596	14	2.8	15	85	7	57	14	14	7	63	1.50
33641559--33641596	15	2.7	14	84	8	51	15	13	5	65	1.43
33641405--33641822	179	2.3	181	90	4	684	26	16	17	39	1.91
33641735--33641776	14	2.9	15	85	7	59	14	14	7	64	1.48
33641738--33641787	14	3.6	14	81	7	57	20	12	4	64	1.43
33645573--33645680	38	2.8	38	88	0	153	35	16	23	25	1.95
33645578--33645700	38	3.2	38	82	7	151	34	17	23	25	1.96
33653932--33654586	38	17.2	38	96	0	1168	31	20	23	24	1.98
33662163--33662340	48	3.7	48	85	5	227	25	18	30	25	1.98
33664813--33664845	10	3.4	10	91	4	50	81	0	18	0	0.68
33665883--33666067	40	4.6	39	82	6	203	24	22	28	25	1.99
33665883--33666065	79	2.3	81	82	7	214	24	22	27	25	2.00
33665936--33666100	79	2.1	79	80	6	183	26	20	27	25	1.99
33673325--33673509	40	4.7	40	78	7	182	25	22	26	25	2.00
33673378--33673542	79	2.1	79	79	6	174	26	20	26	26	1.99
33675588--33675719	27	4.9	26	86	9	160	34	21	25	18	1.96
33676652--33676717	33	2.0	33	96	0	123	37	15	9	37	1.79
33677352--33678213	26	33.2	26	99	0	1697	38	26	4	30	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33678396--33678542	72	2.0	72	97	0	276	29	17	10	42	1.83
33683536--33683694	27	5.9	27	80	11	166	33	22	25	18	1.96
33683554--33683697	54	2.7	54	92	2	227	34	23	24	17	1.96
33684568--33684727	26	6.2	26	96	0	293	36	26	6	30	1.81
33693493--33693745	40	6.4	40	81	8	297	27	28	20	24	1.99
33693493--33693745	76	3.2	79	88	7	356	27	28	20	24	1.99
33693512--33693740	116	2.0	116	86	3	318	28	28	19	23	1.98
33700979--33701115	40	3.5	40	79	6	154	27	27	21	24	1.99
33702987--33703089	43	2.4	43	96	0	197	22	14	35	27	1.93
33703071--33703144	29	2.6	29	89	4	105	25	16	32	25	1.96
33703455--33703690	40	5.9	40	79	2	190	25	22	28	24	1.99
33713935--33714073	72	1.9	72	97	0	260	38	9	22	29	1.85
33714122--33714437	158	2.0	157	94	0	551	36	10	23	29	1.88
33715659--33715817	27	5.9	27	80	11	157	35	21	23	19	1.96
33715694--33715817	54	2.3	54	92	0	203	35	23	24	16	1.95
33715923--33715996	28	2.8	26	85	4	85	31	8	22	37	1.84
33717432--33717539	26	4.2	26	93	0	189	36	24	7	32	1.83
33724577--33724751	88	2.0	88	90	0	278	34	16	18	30	1.93
33739163--33739312	27	5.6	27	79	7	83	41	19	8	30	1.81
33739188--33739554	54	6.8	53	80	7	368	39	19	10	30	1.86
33739188--33739500	27	11.7	27	81	5	332	39	20	9	30	1.84
33739163--33739554	107	3.7	107	81	5	427	39	19	10	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33739188--33739557	27	13.8	27	81	4	329	38	19	10	30	1.86
33739320--33739595	27	10.3	27	81	4	190	38	18	13	30	1.89
33739824--33739942	41	2.9	41	88	0	175	21	19	29	29	1.98
33740092--33740150	22	2.7	22	78	5	57	22	27	18	32	1.97
33741148--33741181	16	2.1	16	100	0	68	47	11	11	29	1.76
33742095--33742281	49	3.8	48	74	6	142	24	11	33	30	1.91
33742099--33742281	98	1.9	98	84	0	249	24	12	32	30	1.92
33750841--33751018	27	6.6	27	83	3	196	29	27	15	27	1.96
33750862--33751017	82	1.9	81	86	3	224	29	27	15	27	1.96
33756160--33757021	26	33.2	26	96	0	1589	30	5	26	36	1.80
33757362--33757449	44	2.0	44	97	0	167	37	11	30	20	1.88
33758240--33758269	8	3.8	8	90	0	51	43	26	26	3	1.70
33758660--33758771	27	4.2	26	82	7	125	16	24	23	35	1.95
33758660--33758771	54	2.1	54	84	3	145	16	24	23	35	1.95
33762519--33762584	33	2.0	33	96	0	123	37	18	28	15	1.91
33764004--33764111	26	4.2	26	93	0	189	31	6	25	37	1.81
33765655--33765767	27	4.2	27	85	3	129	16	23	23	36	1.94
33765655--33765767	54	2.1	54	88	3	165	16	23	23	36	1.94
33768402--33768584	40	4.6	40	82	9	214	25	28	21	24	1.99
33768404--33768584	79	2.3	80	83	7	226	24	28	22	24	1.99
33776489--33776671	79	2.3	81	84	7	232	25	27	22	24	2.00
33776468--33776671	40	5.1	40	82	8	238	25	27	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33793458--33793501	23	1.9	23	100	0	88	29	13	25	31	1.94
33794191--33794215	13	1.9	13	100	0	50	32	4	24	40	1.73
33795133--33795293	81	2.0	81	91	3	263	27	6	16	49	1.71
33795405--33795488	44	1.9	44	88	7	127	21	19	29	29	1.97
33803270--33803312	15	2.9	15	79	10	52	11	16	13	58	1.64
33818683--33819020	111	3.0	112	73	9	380	33	10	23	31	1.90
33824283--33824338	19	3.0	19	77	12	62	37	14	8	39	1.77
33841178--33841275	48	2.1	47	88	1	142	34	32	14	18	1.91
33842093--33842122	15	2.1	14	93	6	51	23	0	3	73	0.98
33854280--33854358	37	2.1	37	90	0	122	25	31	18	24	1.98
33854476--33854584	49	2.3	47	93	4	182	30	31	7	31	1.85
33854855--33854912	24	2.5	23	81	16	66	32	5	0	62	1.18
33857590--33857615	5	5.2	5	100	0	52	61	0	0	38	0.96
33859985--33860097	49	2.3	49	80	3	138	29	21	27	22	1.99
33864605--33864648	19	2.4	19	85	7	56	50	0	9	40	1.34
33882875--33882908	15	2.3	15	94	0	59	32	14	14	38	1.87
33885102--33885175	37	2.0	37	91	0	121	31	29	18	20	1.97
33890853--33890947	47	2.0	47	81	4	111	26	15	16	41	1.89
33898171--33898231	27	2.3	27	82	0	77	36	19	8	36	1.82
33898171--33898353	54	3.4	54	77	3	136	33	19	8	38	1.83
33898182--33898311	27	4.8	27	90	0	161	29	18	9	43	1.81
33898290--33898536	27	9.2	27	81	6	250	40	22	8	28	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33898290--33898553	81	3.3	79	83	5	287	40	21	8	29	1.83
33898290--33898564	54	5.1	54	76	11	162	40	22	8	29	1.83
33898668--33898740	27	2.7	27	81	12	87	34	21	21	21	1.97
33899524--33899652	52	2.6	51	88	4	192	30	20	20	28	1.98
33899524--33899658	26	5.3	26	81	4	154	29	20	21	28	1.98
33899863--33899941	31	2.5	31	95	0	140	30	18	24	26	1.98
33908576--33908664	39	2.3	39	90	0	133	28	23	21	26	1.99
33909038--33909166	54	2.4	53	86	12	192	30	1	3	64	1.21
33910073--33910097	7	3.6	7	100	0	50	28	0	12	60	1.32
33910145--33910242	49	2.0	49	92	4	162	31	18	20	29	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276