genome.fa.s12.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  126  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40671652--40671826	46	3.8	46	96	0	314	29	29	21	20	1.98
40682645--40682680	15	2.4	15	100	0	72	27	25	11	36	1.90
40683993--40684445	226	2.0	226	100	0	906	29	19	21	29	1.98
40706731--40706817	22	3.9	23	77	15	92	34	20	22	21	1.97
40706731--40706816	45	1.9	44	84	11	113	33	20	23	22	1.97
40711168--40711343	48	3.7	48	88	0	244	25	17	28	28	1.97
40711161--40711374	96	2.2	96	80	3	225	27	17	28	27	1.98
40712946--40713031	19	4.5	19	95	0	154	20	19	41	17	1.90
40713986--40714051	29	2.3	29	84	5	80	43	1	24	30	1.63
40717468--40717603	43	3.2	43	71	20	115	29	25	19	25	1.98
40720770--40720822	26	2.0	26	100	0	106	18	11	22	47	1.81
40743470--40743853	192	2.0	192	100	0	768	27	25	19	27	1.99
40748647--40748680	15	2.3	15	94	0	59	20	2	41	35	1.68
40757121--40757156	18	2.0	18	100	0	72	55	16	5	22	1.62
40759773--40759962	43	4.4	43	86	4	249	34	23	13	27	1.93
40762160--40762198	10	3.8	10	86	6	60	33	17	15	33	1.92
40762245--40762314	25	2.8	25	86	0	95	24	27	22	25	2.00
40767350--40767392	17	2.5	17	96	0	77	13	30	34	20	1.92
40767727--40767765	10	3.8	10	86	6	60	35	17	15	30	1.91
40767726--40767766	21	2.0	21	100	0	82	39	17	14	29	1.89
40767812--40767881	25	2.8	25	86	0	95	25	22	21	30	1.99
40767811--40767894	25	3.4	24	77	8	71	28	20	21	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40770976--40771090	60	1.9	60	87	0	167	11	33	11	43	1.76
40777902--40778032	65	2.0	65	98	0	253	24	29	16	30	1.96
40778802--40779027	56	4.0	56	82	11	293	47	7	20	24	1.76
40778778--40779009	112	2.1	112	91	4	380	46	8	21	23	1.79
40780481--40780664	40	4.6	39	91	1	215	23	21	28	26	1.99
40786850--40786964	27	4.3	27	80	6	117	35	20	23	20	1.96
40786850--40786964	55	2.1	54	82	6	144	35	20	23	20	1.96
40788125--40788179	25	2.3	22	76	14	56	63	0	34	1	1.05
40789504--40789628	56	2.2	56	88	2	189	27	27	13	32	1.94
40789620--40789682	27	2.3	27	86	0	81	25	25	9	39	1.86
40789745--40789949	31	6.5	31	89	2	304	25	28	18	27	1.98
40789954--40790054	33	3.1	33	79	9	109	27	23	12	35	1.92
40789966--40790054	33	2.7	33	84	1	117	24	22	13	39	1.90
40792187--40792224	19	2.1	19	85	14	53	13	13	2	71	1.26
40794441--40794515	31	2.4	31	76	14	73	54	4	0	41	1.19
40803725--40803833	37	2.9	37	95	0	191	26	31	19	22	1.98
40804012--40804042	13	2.4	13	94	0	53	41	12	0	45	1.42
40803979--40804198	50	4.5	48	87	7	318	30	25	7	36	1.83
40803979--40804198	98	2.2	98	95	0	395	30	25	7	36	1.83
40812338--40812397	24	2.5	24	86	2	84	18	20	18	43	1.88
40812379--40812455	24	3.2	24	75	10	93	20	23	16	38	1.92
40812388--40812519	25	5.4	25	68	13	94	21	21	17	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40812379--40812513	49	2.8	49	91	2	218	22	22	16	39	1.92
40822473--40822641	27	6.2	27	83	4	196	27	15	26	30	1.96
40822474--40822629	82	1.9	81	88	3	233	26	15	28	29	1.96
40831601--40831863	40	6.6	40	88	3	325	24	20	27	26	1.99
40831640--40831898	80	3.3	80	85	3	256	25	20	27	25	1.99
40833467--40833581	25	4.6	25	81	4	124	22	24	19	33	1.97
40833466--40833581	50	2.3	50	85	2	162	22	25	18	33	1.97
40838832--40838927	49	2.0	49	93	0	165	26	18	28	27	1.98
40844146--40844205	27	2.3	26	85	2	75	35	20	23	21	1.96
40844167--40844230	33	2.0	32	84	3	83	35	20	23	20	1.96
40844246--40844297	27	2.0	26	84	3	68	34	21	26	17	1.95
40844930--40845067	27	5.1	27	81	5	147	25	19	18	36	1.94
40844926--40845067	54	2.7	52	82	10	162	25	19	17	38	1.93
40851280--40851339	27	2.3	26	85	2	75	35	20	23	21	1.96
40851307--40851448	67	2.1	67	88	5	203	30	22	28	18	1.97
40851378--40851429	27	2.0	26	84	3	68	34	21	26	17	1.95
40852028--40852081	27	2.0	27	85	3	74	35	20	22	22	1.96
40852082--40852226	27	5.4	27	86	0	200	24	19	20	36	1.95
40863636--40863756	46	2.6	45	82	8	147	28	18	28	25	1.98
40866035--40866076	14	2.7	15	89	10	59	54	14	0	30	1.40
40868708--40868777	35	2.0	35	94	0	122	32	18	15	32	1.93
40880632--40880705	36	2.1	36	100	0	148	41	13	5	39	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40885535--40885584	21	2.3	22	83	13	68	42	0	0	58	0.98
40887532--40887917	196	2.0	196	87	3	553	31	22	12	33	1.92
40888317--40888414	30	3.3	30	72	4	90	27	26	16	29	1.97
40890186--40890256	37	1.9	37	86	11	101	76	2	18	2	1.04
40890196--40890245	6	8.2	6	83	14	50	76	2	20	2	0.99
40890306--40890336	12	2.6	12	100	0	62	45	12	16	25	1.83
40892517--40892614	30	3.3	30	72	4	90	27	26	16	29	1.97
40894288--40894455	49	3.4	49	77	4	144	27	20	27	24	1.99
40904670--40904709	19	2.1	19	86	9	55	10	25	37	27	1.88
40907550--40907597	16	3.1	15	90	6	69	64	2	2	31	1.16
40907546--40907597	8	6.5	8	82	8	61	65	1	1	30	1.14
40907545--40907601	24	2.4	24	79	5	71	64	1	3	29	1.20
40909158--40909199	15	2.9	14	76	16	50	64	7	9	19	1.46
40909072--40909256	102	1.8	101	81	5	230	41	18	15	23	1.89
40909265--40909296	14	2.3	14	100	0	64	62	6	12	18	1.50
40909125--40909474	192	1.8	189	91	1	574	38	18	16	26	1.92
40909388--40909681	75	3.8	74	78	9	277	31	21	19	27	1.97
40920139--40920186	16	3.1	15	90	6	69	64	2	2	31	1.16
40920135--40920186	8	6.5	8	82	8	61	65	1	1	30	1.14
40920134--40920190	24	2.4	24	79	5	71	64	1	3	29	1.20
40920341--40920405	25	2.8	24	83	6	80	52	6	7	33	1.55
40920426--40920559	25	5.6	25	70	15	86	58	2	4	35	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40920355--40920494	25	5.3	27	72	11	94	55	3	7	32	1.46
40921044--40921148	30	3.5	30	90	0	174	22	2	49	24	1.63
40926153--40926443	38	6.9	38	72	19	213	29	15	24	30	1.96
40926187--40926436	85	2.8	93	91	6	334	30	16	23	29	1.96
40926228--40926436	85	2.5	85	97	0	391	30	15	23	29	1.96
40928174--40928221	21	2.3	20	79	10	53	47	2	2	47	1.25
40930581--40930804	40	5.6	40	86	3	315	22	23	28	25	2.00
40930581--40930804	83	2.8	80	90	4	369	22	23	28	25	2.00
40938130--40938169	14	3.0	14	92	7	66	0	5	12	82	0.82
40938285--40938454	92	1.8	92	97	0	322	38	20	17	23	1.93
40944605--40944956	41	8.7	41	78	5	297	38	18	17	26	1.92
40944615--40944956	163	2.1	163	85	3	456	37	19	16	26	1.93
40944615--40944956	82	4.2	82	82	5	390	37	19	16	26	1.93
40945551--40945610	15	3.9	15	76	10	68	21	0	36	41	1.54
40945546--40945614	22	3.1	22	80	12	72	21	0	36	42	1.53
40945549--40945611	8	8.4	7	78	15	56	20	0	36	42	1.52
40949317--40949609	120	2.4	120	94	2	500	41	3	4	50	1.39
40949442--40949483	15	2.9	15	82	10	52	47	0	0	52	1.00
40949571--40949612	15	2.7	16	82	14	52	45	0	2	52	1.13
40949562--40949603	15	2.9	15	82	10	52	47	0	0	52	1.00
40949546--40949862	157	2.0	157	95	1	564	47	5	3	43	1.41
40949985--40950053	16	4.2	16	96	3	129	37	37	0	24	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40949985--40950053	33	2.1	32	97	2	129	37	37	0	24	1.56
40952513--40952539	8	3.4	8	100	0	54	33	0	11	55	1.35
40954441--40954515	25	3.0	25	92	0	114	12	40	17	30	1.86
40955757--40956074	9	35.1	9	65	16	95	46	13	2	36	1.58
40955835--40955992	46	3.4	46	91	0	244	48	12	3	36	1.56
40955796--40955900	30	3.4	29	69	25	81	47	11	2	38	1.54
40955948--40956025	30	2.6	30	97	0	147	46	12	2	38	1.56
40965144--40965314	43	4.0	43	89	1	254	24	21	31	22	1.98
40965161--40965342	43	4.3	43	85	3	145	26	21	30	21	1.99
40975414--40975445	2	16.0	2	100	0	64	0	50	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276