genome.fa.s12.2.7.7.80.10.50.1000.145.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  145  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47296557--47296800	126	1.9	126	85	3	330	35	32	4	27	1.77
47300379--47300409	5	6.2	5	92	0	53	38	3	0	58	1.15
47300410--47300455	22	2.1	22	100	0	92	21	8	0	69	1.15
47302659--47302801	55	2.6	53	78	8	142	26	32	25	15	1.95
47308936--47308979	23	1.9	23	86	9	63	20	6	2	70	1.21
47317181--47317227	17	2.8	17	83	6	60	8	6	4	80	1.00
47317170--47317233	11	5.6	11	80	12	51	10	7	3	78	1.07
47328109--47328796	342	2.0	342	98	0	1340	28	19	20	30	1.97
47330434--47330476	21	2.0	21	95	0	77	25	2	0	72	0.97
47332454--47332710	114	2.2	114	89	2	381	25	21	18	34	1.96
47332670--47332835	46	3.7	43	72	12	129	36	12	24	25	1.91
47332703--47332843	46	3.1	45	75	11	135	34	14	27	24	1.94
47332671--47332848	45	4.0	46	73	11	145	35	13	25	24	1.92
47333007--47333072	27	2.4	27	92	0	105	18	1	31	48	1.57
47333741--47333782	21	2.0	22	86	13	61	21	0	7	71	1.09
47333580--47333821	90	2.7	88	77	8	265	23	5	13	57	1.56
47334355--47334392	19	2.0	19	85	10	51	44	0	13	42	1.43
47334544--47334600	29	2.0	29	83	13	73	45	0	5	49	1.24
47334659--47334730	33	2.2	32	88	11	103	38	0	6	54	1.28
47335683--47335739	18	3.4	18	67	18	59	33	7	17	42	1.76
47336984--47337030	22	2.1	22	100	0	94	8	14	19	57	1.63
47343546--47343591	19	2.3	20	88	3	76	45	19	10	23	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47343575--47343605	14	2.2	14	94	0	53	38	19	9	32	1.84
47343740--47343796	29	2.0	29	86	6	80	43	1	3	50	1.29
47343855--47343917	33	1.9	32	87	12	83	42	0	4	52	1.22
47344172--47344213	20	2.0	20	82	13	50	47	0	4	47	1.23
47344233--47344273	20	2.0	20	86	9	57	80	9	2	7	0.99
47347840--47347915	28	2.7	29	85	6	111	30	15	0	53	1.42
47347874--47347923	18	2.8	18	82	11	59	32	16	0	52	1.44
47347870--47347924	23	2.4	23	84	6	67	30	14	0	54	1.41
47347840--47347915	5	13.8	5	75	16	62	30	15	0	53	1.42
47347840--47347924	28	3.0	28	77	16	95	29	15	0	55	1.41
47348312--47348372	17	3.7	16	79	12	70	18	18	1	62	1.41
47348363--47348523	43	3.6	43	78	9	180	26	9	0	63	1.26
47348413--47348445	16	2.0	17	88	5	50	30	0	0	69	0.88
47348429--47348692	27	10.3	26	72	16	196	27	11	0	60	1.31
47348413--47348674	49	5.2	48	72	17	144	27	10	0	62	1.28
47348429--47348704	76	3.6	76	94	0	473	26	12	0	60	1.32
47348667--47348786	21	5.2	21	65	21	62	25	15	1	57	1.47
47348501--47348798	49	6.1	47	69	15	167	26	13	0	59	1.39
47348429--47348762	152	2.2	152	87	5	473	27	12	0	59	1.38
47348731--47348782	21	2.6	20	82	14	63	21	13	1	63	1.39
47348670--47348840	93	1.8	94	83	3	229	22	16	1	59	1.46
47350883--47350918	13	2.8	14	84	16	51	27	25	0	47	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47350870--47350910	18	2.2	19	87	12	59	29	24	0	46	1.53
47351033--47351167	39	3.4	38	73	8	101	28	28	20	23	1.99
47351407--47351445	18	2.1	19	90	4	62	48	10	0	41	1.37
47352761--47352817	5	11.0	5	78	14	62	56	1	0	42	1.10
47352760--47352815	12	4.5	12	81	16	69	55	1	0	42	1.10
47352762--47352817	26	2.2	26	90	6	69	55	1	0	42	1.10
47354736--47355414	117	5.9	116	76	10	522	38	15	20	25	1.91
47354998--47355283	106	2.6	110	77	11	282	42	13	20	22	1.88
47355202--47355406	112	1.9	110	89	3	322	37	17	22	23	1.94
47358191--47358229	20	2.0	20	90	10	62	46	20	0	33	1.51
47359350--47359378	13	2.2	13	100	0	58	51	0	6	41	1.28
47362644--47362685	18	2.3	18	95	0	75	26	23	16	33	1.96
47363459--47363571	29	4.0	29	79	6	115	28	29	14	28	1.95
47363448--47363558	58	1.9	57	85	1	150	27	29	14	27	1.95
47366851--47367634	392	2.0	392	100	0	1568	28	25	16	29	1.97
47367875--47367913	16	2.4	17	95	4	71	12	5	33	48	1.63
47368197--47368237	18	2.2	19	83	12	50	14	39	26	19	1.90
47381601--47381715	44	2.6	44	85	2	149	35	13	22	27	1.92
47381601--47381734	46	3.0	45	82	4	153	35	14	23	26	1.93
47399438--47399498	31	2.0	31	93	0	104	31	6	26	36	1.82
47406739--47406768	14	2.1	14	93	0	51	16	0	36	46	1.47
47410137--47410195	31	1.9	31	89	0	91	45	6	22	25	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47416252--47416302	26	2.0	26	84	0	66	47	0	0	52	1.00
47417456--47417489	17	1.9	18	94	5	61	32	5	17	44	1.73
47424969--47425040	37	1.9	37	81	10	85	40	0	18	41	1.50
47425369--47425395	6	4.5	6	100	0	54	18	18	14	48	1.82
47431595--47431824	48	4.8	49	76	9	188	26	21	29	22	1.99
47439212--47439440	48	4.8	48	77	10	186	28	20	29	21	1.98
47439212--47439435	94	2.3	95	84	5	272	28	20	29	21	1.98
47442702--47442750	21	2.3	21	86	6	64	48	4	2	44	1.33
47443308--47443389	17	4.9	17	89	5	123	45	4	6	43	1.50
47443307--47443390	33	2.5	33	92	1	132	45	4	5	44	1.49
47449814--47449865	23	2.3	23	83	6	61	44	9	15	30	1.78
47450292--47450363	33	2.1	35	82	12	87	45	2	2	48	1.31
47453487--47453527	21	1.9	22	85	14	59	31	24	31	12	1.92
47453746--47453794	21	2.3	21	85	0	71	22	28	34	14	1.93
47463194--47463366	46	3.7	46	78	13	210	21	21	27	28	1.99
47463191--47463361	93	1.8	93	96	0	315	21	21	28	28	1.99
47466448--47466506	30	2.0	30	93	0	100	33	8	20	37	1.83
47471768--47471831	24	2.7	24	80	0	65	7	9	12	70	1.34
47482765--47482831	30	2.2	31	86	2	91	26	5	11	55	1.59
47482953--47482986	12	2.8	12	90	0	50	67	0	0	32	0.91
47484026--47484145	46	2.5	48	90	2	181	27	18	30	24	1.98
47484020--47484338	142	2.2	139	80	7	340	26	18	28	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47484164--47484293	49	2.7	49	77	7	138	29	20	26	23	1.99
47491020--47491122	40	2.7	40	92	5	169	55	3	6	33	1.45
47491866--47491921	20	2.7	21	80	5	69	55	3	1	39	1.28
47493921--47494007	43	2.0	43	100	0	174	41	16	9	33	1.80
47494248--47494302	29	1.9	28	85	10	76	23	43	18	14	1.87
47494966--47495227	139	1.9	139	97	0	497	39	19	7	33	1.79
47512075--47512153	37	2.1	37	90	0	122	25	31	18	24	1.98
47512274--47512402	49	2.7	49	78	7	124	26	31	10	32	1.89
47516378--47516419	22	1.9	22	90	0	66	19	16	16	47	1.83
47517819--47517888	34	2.1	34	97	0	131	27	24	17	31	1.97
47520759--47520816	2	29.0	2	100	0	116	0	50	0	50	1.00
47520950--47520996	22	2.2	22	92	3	78	14	23	14	46	1.82
47526641--47526685	21	2.3	20	88	11	67	48	0	6	44	1.29
47530445--47530518	38	1.9	38	81	5	87	39	0	1	59	1.06
47530470--47530527	20	2.8	20	79	5	62	37	0	1	60	1.07
47530492--47530537	20	2.3	20	81	7	58	39	0	4	56	1.19
47532796--47533058	46	5.6	46	74	10	160	25	29	16	28	1.97
47534803--47535065	46	5.6	46	74	10	160	25	29	16	28	1.97
47540920--47541423	3	167.7	3	68	11	219	59	2	8	29	1.40
47541100--47541126	14	1.9	14	100	0	54	59	3	7	29	1.42
47541285--47541423	68	2.0	67	81	10	158	58	2	8	30	1.43
47542017--47542068	3	18.0	3	88	7	81	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47543049--47543366	44	7.3	44	68	18	200	19	21	23	34	1.96
47542995--47543806	86	9.4	86	87	1	1011	20	23	23	32	1.98
47543860--47543984	64	2.0	64	85	0	169	36	17	16	29	1.91
47545527--47545594	8	8.5	8	76	14	52	2	2	11	82	0.89
47545531--47545594	6	10.5	6	84	15	55	3	3	10	82	0.89
47545534--47545593	7	8.4	7	77	15	52	3	3	8	85	0.83
47545531--47545590	15	4.1	14	76	16	68	3	3	10	83	0.88
47550577--47550996	3	141.0	3	70	9	225	60	1	8	30	1.34
47550738--47550778	14	2.9	14	89	7	57	60	2	4	31	1.30
47550860--47550904	16	2.8	16	96	0	81	64	0	6	28	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276