genome.fa.s12.2.7.7.80.10.50.1000.203.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  203  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67435164--67435707	272	2.0	272	100	0	1088	25	22	20	31	1.98
67443275--67443307	6	5.5	6	96	0	57	15	3	0	81	0.80
67443275--67443314	18	2.2	18	86	0	53	17	5	0	77	0.94
67443713--67443739	6	4.5	6	100	0	54	48	14	18	18	1.82
67447907--67447968	30	2.1	30	84	0	79	32	22	8	37	1.83
67460705--67460855	28	5.4	28	91	1	214	26	11	27	33	1.92
67461499--67461651	76	2.0	76	98	0	297	24	11	24	39	1.88
67482533--67482566	16	2.0	17	88	11	52	52	5	0	41	1.25
67483221--67483294	20	3.7	20	87	0	103	12	31	39	17	1.86
67484434--67484588	42	3.7	42	78	5	152	29	25	16	29	1.96
67487754--67487838	24	3.5	24	100	0	170	34	14	15	36	1.87
67490734--67490881	42	3.5	42	81	2	154	28	22	16	32	1.96
67505243--67505319	20	4.0	20	80	8	97	41	22	5	31	1.75
67505512--67505566	23	2.4	23	100	0	110	32	20	30	16	1.94
67510625--67510709	27	3.2	26	79	9	82	36	20	21	22	1.95
67510845--67510983	27	5.1	27	83	0	188	25	21	19	33	1.97
67514022--67514046	13	1.9	13	100	0	50	68	0	0	32	0.90
67517224--67517258	17	2.1	17	89	10	54	11	28	14	45	1.79
67518199--67518249	21	2.4	21	96	0	93	45	25	1	27	1.64
67522509--67522653	40	3.6	40	85	4	193	25	24	26	23	2.00
67529032--67529214	40	4.6	40	87	5	237	24	20	27	26	1.99
67529083--67529237	80	1.9	79	87	6	224	25	19	27	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67539794--67539847	23	2.3	23	83	0	63	31	18	22	27	1.97
67543385--67543608	25	8.7	25	77	5	232	46	14	19	19	1.84
67543355--67543486	31	4.5	31	79	11	159	46	14	19	18	1.83
67543355--67543608	56	4.8	56	83	8	316	46	13	19	19	1.83
67543385--67543608	50	4.4	50	85	6	286	46	14	19	19	1.84
67544095--67544165	27	2.6	27	86	0	97	25	25	18	30	1.98
67544097--67544183	27	3.2	27	81	1	75	25	21	18	34	1.96
67546660--67546829	27	6.3	26	73	11	103	40	20	7	31	1.81
67546679--67546829	54	2.8	53	76	13	164	40	19	8	31	1.82
67546752--67547169	81	5.2	79	81	5	415	32	21	7	38	1.82
67546806--67547169	27	13.5	27	86	1	451	30	21	7	39	1.82
67549113--67549240	27	4.8	27	78	6	118	39	21	8	31	1.83
67549205--67549613	27	15.2	27	84	2	302	30	22	7	39	1.82
67549106--67549279	81	2.2	80	78	8	183	37	21	7	33	1.82
67549232--67549613	54	7.1	54	84	3	473	30	22	7	40	1.81
67549232--67549613	81	4.7	79	84	4	462	30	22	7	40	1.81
67554993--67555085	40	2.3	40	92	3	152	23	21	27	26	1.99
67556926--67557759	43	19.4	43	99	0	1659	23	14	32	29	1.94
67557741--67557814	29	2.6	29	89	4	105	25	16	32	25	1.96
67558129--67558385	40	6.4	40	81	3	270	24	22	28	24	2.00
67574095--67574268	46	3.8	45	78	13	201	28	28	20	21	1.98
67574102--67574273	93	1.8	93	92	0	290	28	28	20	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67578870--67579245	50	7.5	49	75	7	283	30	25	17	26	1.97
67578915--67579197	101	2.8	100	80	2	255	31	25	16	26	1.97
67578868--67579245	151	2.5	150	87	2	526	30	25	17	26	1.97
67588217--67588322	30	3.5	30	75	5	106	19	17	23	38	1.93
67590498--67590553	27	2.1	26	90	9	87	33	8	17	39	1.81
67591116--67591162	21	2.1	22	84	11	60	44	17	19	19	1.87
67591806--67591850	11	3.8	11	82	11	54	82	6	0	11	0.84
67591806--67591838	14	2.4	14	94	0	57	84	6	0	9	0.76
67592475--67592514	21	1.9	20	85	10	53	22	22	20	35	1.96
67593083--67593138	27	2.1	26	90	9	87	39	17	8	33	1.81
67593096--67593153	27	2.1	27	84	6	73	41	18	10	29	1.84
67605648--67605825	27	6.6	27	83	3	205	26	15	28	29	1.96
67605649--67605804	82	1.9	81	88	3	233	26	15	28	29	1.96
67605645--67605825	82	2.2	81	83	2	229	27	15	27	29	1.96
67613923--67614058	42	3.2	42	77	0	146	31	14	25	28	1.95
67613943--67614074	42	3.1	42	77	0	147	30	17	25	26	1.97
67617297--67617363	29	2.3	29	86	0	98	35	17	16	29	1.92
67617315--67617413	29	3.5	29	78	6	96	35	21	17	26	1.95
67617305--67617419	29	4.2	26	78	7	86	36	20	17	26	1.94
67621466--67621594	28	4.7	26	70	14	89	31	28	17	23	1.97
67621486--67621591	57	1.9	57	84	7	146	33	29	16	19	1.94
67623340--67623385	23	2.0	23	100	0	92	17	4	21	56	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67631415--67631585	43	4.0	43	70	8	132	25	16	25	32	1.96
67638382--67638520	39	3.6	39	86	1	190	33	5	17	43	1.71
67639894--67640018	30	4.2	30	77	13	125	56	13	4	25	1.57
67639934--67640019	25	3.1	28	85	11	99	56	13	4	24	1.56
67639960--67640009	16	3.4	16	71	21	54	56	14	4	26	1.56
67639910--67640042	30	4.5	30	81	8	139	54	15	3	26	1.57
67639974--67640059	25	3.4	25	81	10	81	53	17	2	26	1.56
67640009--67640059	12	4.1	12	80	7	57	52	17	1	27	1.55
67640023--67640057	13	2.8	12	87	8	52	51	17	2	28	1.59
67642871--67642948	22	3.5	22	98	0	147	30	16	26	25	1.97
67644576--67644768	98	2.0	99	98	1	379	30	9	16	44	1.79
67645290--67645572	138	2.0	141	85	6	389	44	4	8	42	1.55
67648601--67648635	17	2.1	17	100	0	70	40	17	8	34	1.80
67652589--67652660	28	2.6	28	97	0	135	26	13	29	30	1.94
67656538--67656625	27	3.3	27	80	13	101	38	19	22	19	1.93
67656531--67656642	54	2.1	54	83	6	138	37	21	22	18	1.94
67656550--67656642	27	3.4	27	80	7	107	36	23	22	17	1.94
67657056--67657088	8	4.1	8	92	0	57	3	24	24	48	1.65
67667281--67667312	17	1.9	17	93	6	57	46	12	21	18	1.82
67671203--67671415	90	2.4	90	99	0	417	32	22	14	30	1.94
67672109--67672156	16	3.1	15	82	14	53	47	2	14	35	1.56
67672865--67673002	48	2.9	48	91	0	213	26	29	18	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67684269--67684403	48	2.8	48	83	9	168	27	27	17	27	1.98
67689384--67689751	184	2.0	184	100	0	736	40	15	12	31	1.85
67692036--67692099	18	3.6	18	82	0	83	21	21	18	37	1.94
67692020--67692098	36	2.2	36	90	0	122	24	21	16	37	1.93
67692030--67692114	36	2.4	36	86	4	100	25	20	17	36	1.94
67703442--67703501	30	2.0	30	93	0	102	38	8	16	36	1.79
67705540--67705635	29	3.3	29	85	1	131	33	32	9	25	1.88
67708942--67709083	40	3.6	40	91	2	225	23	23	26	27	2.00
67709247--67709543	149	2.0	148	95	0	522	30	13	19	36	1.90
67713625--67713671	23	2.0	23	95	0	85	36	8	42	12	1.74
67713860--67713984	29	4.3	29	87	1	180	30	31	13	24	1.94
67727126--67727155	15	1.9	16	93	6	53	56	0	0	43	0.99
67727340--67727442	50	2.0	51	96	1	190	30	9	5	54	1.56
67733132--67733205	29	2.6	29	86	4	96	27	16	31	25	1.96
67744498--67744565	34	2.0	34	85	5	93	29	26	20	23	1.99
67751632--67751714	34	2.4	34	85	0	112	27	24	25	22	2.00
67770661--67770727	29	2.2	30	82	15	77	31	23	1	43	1.63
67785738--67785811	29	2.6	29	86	4	96	27	16	31	25	1.96
67788258--67788393	57	2.4	57	86	0	182	29	18	22	30	1.97
67795109--67795291	40	4.6	40	82	6	212	24	27	22	25	2.00
67795111--67795291	79	2.3	80	81	8	208	23	27	23	25	2.00
67797398--67797601	40	5.1	40	87	2	261	23	23	26	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67805596--67805771	40	4.4	39	85	6	203	25	22	27	24	2.00
67805596--67805771	80	2.2	80	85	7	225	25	22	27	24	2.00
67808954--67809174	40	5.6	40	92	2	313	25	20	26	27	1.99
67817017--67817102	43	2.0	43	82	17	108	23	20	30	25	1.99
67820967--67821123	43	3.7	43	76	10	160	24	17	26	31	1.97
67820964--67821135	85	2.0	86	80	9	192	23	16	26	33	1.96
67821391--67821484	47	2.0	47	100	0	188	29	2	14	53	1.53
67822191--67822310	55	2.2	54	78	11	129	22	24	30	23	1.99
67830596--67830680	24	3.6	24	76	4	84	38	21	23	16	1.92
67836269--67836308	21	2.0	20	85	5	53	35	20	7	37	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276