genome.fa.s12.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  119  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37976636--37976814	47	3.7	47	79	6	171	28	27	18	25	1.98
37976636--37976814	98	1.8	96	86	2	259	28	27	18	25	1.98
37994428--37994530	50	2.1	50	90	0	161	33	24	17	25	1.96
37996372--37996489	60	2.0	60	98	0	227	39	18	16	25	1.91
38007880--38008073	80	2.4	80	96	0	361	25	21	28	24	1.99
38007880--38008073	40	4.8	40	91	0	316	25	21	28	24	1.99
38015938--38016085	40	3.7	41	87	3	167	23	21	28	26	1.99
38015942--38016092	80	1.9	79	82	5	187	23	21	29	25	1.99
38015942--38016112	80	2.2	79	80	5	184	22	21	28	27	1.99
38031143--38031211	27	2.6	27	86	4	86	30	28	14	26	1.95
38035509--38035621	43	2.6	43	83	2	129	27	15	24	32	1.95
38037116--38037155	21	2.0	20	90	5	62	20	20	40	20	1.92
38037604--38037758	25	6.1	26	87	6	194	27	21	21	29	1.99
38037604--38037752	51	2.9	50	84	6	174	26	22	22	28	1.99
38043130--38043179	25	2.0	25	88	0	73	28	22	22	28	1.99
38043215--38043261	20	2.3	20	89	7	69	36	12	19	31	1.89
38043311--38043434	26	4.8	26	92	2	189	27	20	22	29	1.99
38057548--38057629	39	2.1	39	97	0	155	23	30	25	20	1.99
38057667--38057747	41	2.0	41	97	0	153	38	18	7	35	1.79
38061683--38061972	139	2.1	139	96	1	539	32	23	12	32	1.92
38064356--38064521	83	2.0	83	93	0	287	46	21	4	27	1.70
38068283--38068422	67	2.1	67	82	2	163	32	22	25	19	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38068352--38068403	27	2.0	26	84	3	68	34	21	26	17	1.95
38075693--38075828	67	2.0	67	88	2	200	30	21	28	19	1.98
38084623--38084919	40	7.5	40	90	1	402	22	24	28	24	2.00
38091320--38091367	24	2.0	24	95	0	87	4	31	6	58	1.42
38095326--38095394	15	4.6	15	78	7	86	11	20	13	55	1.68
38095317--38095394	30	2.6	29	80	6	84	11	19	15	53	1.71
38103562--38103836	137	2.0	137	99	0	541	22	22	18	36	1.95
38104905--38105050	40	3.6	41	80	9	167	24	27	23	24	2.00
38113886--38114069	40	4.6	40	77	12	191	24	27	23	25	2.00
38113853--38114070	79	2.7	80	80	10	216	24	26	22	26	2.00
38114869--38114948	42	1.9	42	100	0	160	40	27	7	25	1.82
38115208--38115289	41	2.0	41	100	0	164	36	9	17	36	1.82
38132080--38132109	14	2.1	14	93	0	51	36	0	3	60	1.14
38138597--38138705	57	1.9	58	86	1	157	27	28	20	23	1.99
38138917--38139348	40	10.8	40	94	0	729	25	28	21	23	1.99
38139442--38139549	54	2.0	54	98	0	207	39	27	5	26	1.78
38140671--38141074	37	10.9	37	98	0	772	24	31	19	24	1.98
38141285--38141475	47	4.1	47	94	0	301	25	30	11	31	1.91
38141686--38142085	200	2.0	200	98	0	773	29	22	11	37	1.89
38144925--38144973	23	2.1	23	100	0	98	12	34	16	36	1.86
38153898--38154019	43	2.8	44	82	4	169	32	24	17	25	1.96
38169953--38169987	17	2.0	17	88	5	52	14	22	40	22	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38175374--38175495	47	2.6	47	94	0	208	36	14	22	25	1.93
38175474--38175670	55	3.6	54	82	6	220	36	17	25	21	1.95
38181607--38181728	47	2.6	46	92	5	199	35	13	26	25	1.92
38181707--38181903	55	3.6	54	82	6	238	36	17	24	20	1.94
38183656--38183692	7	5.3	7	93	0	65	43	37	0	18	1.51
38183694--38184091	27	14.8	27	83	0	411	33	17	22	26	1.96
38183704--38184090	81	4.8	80	90	3	528	33	16	22	26	1.95
38184257--38184309	27	2.0	27	92	0	88	24	24	18	32	1.97
38184499--38184564	33	2.0	34	87	3	98	27	22	25	24	2.00
38189633--38190086	46	9.3	49	85	9	551	34	14	21	29	1.93
38189633--38190086	98	4.6	98	88	6	668	34	14	21	29	1.93
38190061--38190170	37	3.0	37	93	1	186	37	16	22	23	1.94
38189680--38190086	144	2.8	149	89	5	562	34	14	21	28	1.93
38191424--38191520	49	2.0	50	91	2	160	23	14	28	32	1.94
38194654--38195039	52	7.5	52	91	3	631	35	14	22	27	1.93
38201975--38202108	56	2.4	56	89	0	196	33	21	14	30	1.93
38204135--38204284	43	3.5	42	79	10	162	24	20	28	26	1.99
38212911--38212935	13	1.9	13	100	0	50	40	24	4	32	1.73
38227790--38227965	46	3.8	46	79	12	216	21	21	28	28	1.98
38227787--38227957	93	1.8	93	96	0	315	21	21	28	28	1.99
38229882--38229917	18	2.0	19	89	10	58	11	30	44	13	1.79
38233500--38233552	14	3.9	13	79	13	54	39	0	9	50	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38235237--38235290	26	2.1	26	100	0	108	61	0	7	31	1.24
38236490--38236533	3	14.7	3	100	0	88	68	0	0	31	0.90
38239561--38239733	27	6.4	27	84	0	211	36	17	20	25	1.94
38239561--38239733	54	3.2	54	85	0	238	36	17	20	25	1.94
38239561--38239734	81	2.1	81	84	2	233	36	17	20	25	1.94
38239734--38239786	27	2.0	26	88	3	79	20	24	20	33	1.97
38245407--38245436	16	1.9	15	93	6	51	43	0	23	33	1.54
38248850--38248900	15	3.4	15	88	0	75	15	17	11	54	1.70
38248850--38248908	30	2.0	30	86	0	82	15	16	11	55	1.68
38251641--38251799	51	3.1	51	77	0	176	25	20	25	28	1.99
38256486--38257122	42	15.3	42	84	2	818	21	16	23	38	1.92
38256486--38257122	83	7.6	83	90	1	830	21	16	23	38	1.92
38256486--38257122	125	5.1	126	84	3	797	21	16	23	38	1.92
38259559--38259610	26	2.0	26	96	0	95	11	36	7	44	1.70
38260750--38260801	27	1.9	27	88	7	79	36	0	25	38	1.56
38260750--38260818	27	2.8	24	80	12	68	36	0	23	40	1.55
38263968--38264087	60	2.0	62	88	6	183	29	25	18	26	1.98
38263968--38264119	60	2.5	59	78	13	159	28	24	19	28	1.98
38268102--38268173	22	3.2	22	74	14	67	48	0	12	38	1.41
38269172--38269227	27	2.2	26	81	9	69	37	10	12	39	1.78
38269178--38269239	27	2.3	27	91	0	97	33	11	11	43	1.76
38270514--38270572	29	2.0	29	96	0	109	40	33	3	22	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38270861--38270894	17	2.0	17	100	0	68	35	17	5	41	1.74
38274719--38274795	28	2.8	28	85	0	100	29	15	29	24	1.96
38280852--38281019	40	4.2	40	81	8	121	27	26	20	25	1.99
38280889--38281070	40	4.6	40	82	6	192	27	26	20	24	1.99
38280887--38281070	80	2.3	79	82	11	216	27	27	20	24	1.99
38284386--38284456	28	2.5	29	86	4	92	28	15	28	28	1.96
38284389--38284504	56	2.1	56	80	6	128	29	15	29	25	1.96
38297765--38297797	17	2.0	17	94	5	59	36	15	0	48	1.45
38298083--38298310	46	5.0	46	90	0	321	22	24	14	38	1.91
38301193--38301225	11	2.8	12	90	9	50	72	0	3	24	0.98
38306032--38306073	22	2.0	22	86	13	61	69	0	7	23	1.13
38306006--38306073	26	2.6	28	84	13	83	66	0	7	26	1.18
38306096--38306152	23	2.3	23	82	14	60	70	5	24	0	1.08
38307028--38307152	40	3.2	39	75	7	128	27	16	24	32	1.96
38309212--38309385	46	3.8	45	78	7	161	29	18	27	24	1.98
38316809--38317112	46	6.4	46	73	10	188	28	20	28	22	1.98
38317848--38318245	73	5.4	74	89	4	529	32	19	16	31	1.94
38317915--38319540	147	10.3	148	70	17	743	33	19	17	29	1.95
38318100--38319541	159	9.0	160	73	14	407	33	19	17	28	1.95
38318706--38319535	74	10.9	73	78	11	683	31	20	18	28	1.96
38318626--38319481	159	5.5	157	78	12	476	32	20	18	28	1.96
38318701--38319541	233	3.7	226	82	6	991	32	20	18	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38319553--38319875	73	4.5	71	78	8	314	32	23	16	27	1.96
38319553--38319875	145	2.2	144	87	3	456	32	23	16	27	1.96
38327532--38327595	28	2.3	28	97	0	119	14	26	12	46	1.79
38328173--38328203	12	2.6	12	94	0	53	35	6	29	29	1.82
38332963--38333008	20	2.4	19	81	3	56	39	2	58	0	1.10
38344473--38344631	35	4.6	34	86	7	212	22	24	16	35	1.95
38344474--38344631	70	2.3	70	87	4	237	22	24	16	36	1.94
38349532--38349584	23	2.4	22	76	20	56	9	18	1	69	1.25
38361023--38361136	40	2.8	40	83	4	129	37	21	18	21	1.94
38361568--38361602	17	2.0	18	88	5	54	11	51	28	8	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276