genome.fa.s12.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  149  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48523128--48523353	101	2.2	100	79	4	231	24	15	29	30	1.96
48527023--48527390	49	7.6	49	90	4	559	28	29	8	33	1.86
48530629--48530655	5	5.4	5	100	0	54	22	0	0	77	0.76
48549701--48549743	19	2.2	20	91	4	70	46	2	4	46	1.36
48551833--48552009	96	1.8	96	93	0	309	22	32	10	34	1.88
48551833--48552009	46	3.8	46	90	5	273	22	32	10	34	1.88
48552033--48552273	47	5.1	47	94	0	419	26	28	11	33	1.91
48556276--48556430	42	3.7	42	87	5	206	29	27	18	25	1.98
48556276--48556430	85	1.8	84	83	6	206	29	27	18	25	1.98
48558309--48558421	39	2.9	39	80	5	138	32	3	16	46	1.64
48558515--48558546	14	2.3	14	100	0	64	28	6	31	34	1.82
48571882--48571981	51	2.0	51	84	7	132	32	28	17	23	1.96
48578236--48578358	61	2.0	61	90	0	192	42	21	13	23	1.87
48582212--48582453	28	8.5	28	77	6	236	31	28	17	21	1.97
48582239--48582455	57	3.8	57	93	0	344	30	29	17	22	1.96
48582465--48583459	40	24.9	40	93	0	1670	27	28	21	23	1.99
48583268--48583335	23	3.2	23	60	23	58	23	27	23	25	2.00
48586320--48586413	46	2.0	46	97	0	179	26	17	15	40	1.89
48587618--48587672	22	2.7	20	77	8	65	34	5	16	43	1.71
48588399--48588493	28	3.4	28	66	13	86	45	8	16	29	1.77
48596231--48596313	43	1.9	43	81	13	100	30	31	16	21	1.96
48600749--48600803	27	2.0	27	96	0	101	29	7	30	32	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48607401--48607564	43	3.8	43	78	6	152	32	21	17	28	1.96
48611901--48612070	43	4.0	41	78	12	139	32	24	17	25	1.96
48611901--48612070	86	2.0	85	81	7	202	32	24	17	25	1.96
48616451--48616492	12	3.4	12	78	15	50	64	0	0	35	0.94
48616451--48616500	24	2.1	24	88	7	75	64	0	2	34	1.05
48616851--48616915	31	2.1	31	82	0	76	30	13	10	44	1.78
48622680--48622777	49	2.0	49	93	0	169	29	20	18	31	1.96
48631429--48631606	40	4.5	40	83	3	200	24	21	27	26	1.99
48631429--48631606	80	2.2	80	84	4	227	24	21	27	26	1.99
48639749--48639851	37	2.8	37	93	0	179	25	31	19	24	1.98
48639992--48640235	48	5.0	48	93	1	380	29	27	6	36	1.82
48644432--48644607	46	3.8	45	78	11	196	21	20	28	28	1.98
48644429--48644600	93	1.8	93	93	2	301	22	20	29	27	1.99
48649918--48650053	51	2.7	50	82	2	164	29	27	19	23	1.98
48649911--48650042	50	2.6	50	84	1	165	29	27	18	24	1.98
48650128--48650327	85	2.4	86	82	4	228	35	21	15	29	1.93
48650138--48650367	43	5.4	43	78	9	213	33	20	15	30	1.94
48650295--48650376	44	1.9	44	85	7	116	29	20	15	34	1.94
48657045--48657073	15	1.9	15	100	0	58	48	20	6	24	1.74
48661342--48661387	24	1.9	24	100	0	92	58	8	15	17	1.61
48662358--48662453	7	13.6	7	72	10	52	45	39	2	12	1.54
48662468--48662520	24	2.2	24	100	0	106	41	13	3	41	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48662690--48662737	7	6.9	7	78	0	51	43	37	2	16	1.60
48662845--48662933	15	6.0	14	78	8	61	43	31	0	24	1.54
48662845--48662933	7	12.0	7	71	11	61	43	31	0	24	1.54
48662876--48662932	16	3.8	15	84	6	71	45	26	0	28	1.54
48662909--48662941	14	2.4	14	100	0	66	57	21	0	21	1.41
48663641--48663926	156	1.8	156	84	4	398	25	20	21	32	1.98
48663978--48664004	12	2.2	12	100	0	54	48	29	14	7	1.71
48664023--48664226	50	4.1	50	82	3	266	29	27	19	23	1.98
48664040--48664221	101	1.8	101	92	0	310	29	27	19	23	1.98
48666772--48667142	47	7.7	47	90	3	580	29	10	30	29	1.90
48666775--48667142	96	3.8	96	94	1	605	28	10	31	29	1.90
48666771--48667142	143	2.6	143	92	2	604	29	10	31	29	1.90
48667260--48667337	36	2.1	37	90	2	122	24	19	32	24	1.98
48668713--48668802	25	3.4	25	69	19	83	28	14	2	54	1.52
48668714--48668833	55	2.2	56	95	1	215	28	15	2	54	1.54
48668733--48668816	25	3.2	25	68	21	71	25	15	1	58	1.45
48671211--48671242	16	2.0	16	100	0	64	6	31	37	25	1.81
48673331--48673525	72	2.7	71	85	7	234	25	18	27	29	1.98
48677614--48677708	6	15.8	6	92	0	154	16	3	1	78	0.93
48679518--48679576	30	2.0	30	83	6	75	23	32	27	16	1.96
48680923--48681014	40	2.3	40	83	7	107	29	19	26	25	1.99
48685561--48685646	26	3.2	26	87	9	136	55	3	0	40	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48685559--48685647	29	3.2	29	92	7	157	57	3	0	39	1.15
48689287--48689330	23	1.9	23	95	0	79	22	13	31	31	1.93
48692143--48692221	37	2.1	37	90	0	122	25	31	18	24	1.98
48692340--48692562	47	4.7	47	88	1	313	28	30	8	32	1.88
48695216--48695346	70	1.9	70	85	0	181	30	18	18	32	1.95
48696700--48696984	95	3.0	95	98	0	552	28	23	15	31	1.95
48701827--48701875	20	2.5	20	86	0	62	28	24	8	38	1.84
48709485--48709560	40	1.9	40	81	7	93	55	5	0	39	1.23
48709503--48709538	18	1.9	19	88	5	56	55	8	0	36	1.30
48710097--48710164	30	2.3	30	84	5	84	47	5	19	27	1.72
48712292--48712657	46	8.0	46	94	0	590	37	15	25	22	1.93
48715008--48715075	30	2.3	30	84	5	84	47	5	19	27	1.72
48717647--48717682	18	1.9	19	88	5	56	55	8	0	36	1.30
48718286--48718343	29	2.0	29	93	0	98	55	5	5	34	1.45
48720205--48720254	25	2.0	25	100	0	100	44	16	24	16	1.86
48724532--48724575	2	22.0	2	95	0	79	0	47	2	50	1.13
48728708--48728752	23	2.0	23	91	4	74	35	0	2	62	1.08
48728710--48728759	23	2.2	23	82	7	57	38	0	4	58	1.17
48729966--48730029	31	2.1	31	93	0	110	17	18	10	53	1.72
48730373--48730410	20	1.9	19	85	15	51	73	0	18	7	1.06
48731132--48731265	71	1.9	71	80	0	160	28	25	14	32	1.94
48735003--48735058	18	3.1	18	78	21	64	8	19	0	71	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48735003--48735042	15	2.4	17	88	12	57	7	17	0	75	1.03
48736971--48737917	46	20.6	46	95	1	1686	33	27	16	22	1.95
48740732--48740856	49	2.6	49	77	10	123	24	26	20	28	1.99
48740876--48741041	48	3.5	46	78	4	163	28	27	15	28	1.96
48740891--48741099	94	2.2	93	79	3	204	26	26	16	30	1.96
48744578--48744626	21	2.4	20	82	3	62	48	2	2	46	1.25
48751436--48751516	42	2.0	40	83	13	103	14	37	23	24	1.93
48752512--48752637	48	2.6	46	81	8	128	27	26	19	25	1.99
48752611--48752725	46	2.5	44	84	6	142	25	29	17	27	1.97
48752657--48752822	46	3.6	43	77	11	145	22	28	20	27	1.99
48755107--48755326	40	5.6	40	84	4	250	25	26	23	25	2.00
48758464--48758553	45	2.0	45	95	0	162	21	14	32	32	1.93
48784225--48784346	47	2.6	46	78	7	122	24	29	18	27	1.98
48790353--48790533	40	4.6	40	88	2	258	25	24	24	25	2.00
48797402--48797438	19	2.0	18	89	5	56	24	16	40	18	1.90
48797514--48797625	29	4.0	27	70	10	80	29	14	30	25	1.95
48800242--48800287	20	2.2	20	84	3	56	50	4	13	32	1.61
48801845--48801871	13	2.1	13	100	0	54	22	44	33	0	1.53
48805975--48806134	48	3.3	48	81	8	150	28	18	29	23	1.98
48818598--48818629	14	2.4	13	90	10	55	18	6	12	62	1.50
48819364--48819409	21	2.3	20	78	14	51	45	17	6	30	1.73
48843435--48843610	80	2.2	79	90	2	282	40	3	18	36	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48843887--48844164	48	5.8	48	78	7	253	28	17	25	28	1.98
48848120--48848215	40	2.4	40	81	8	106	31	11	25	32	1.91
48852691--48852878	81	2.3	81	75	0	196	32	22	7	37	1.83
48852736--48852867	27	4.9	27	89	0	183	28	21	8	40	1.82
48852868--48853110	27	9.0	27	82	2	256	37	20	17	23	1.94
48852868--48853110	81	3.0	81	86	1	290	37	20	17	23	1.94
48853442--48853501	27	2.3	26	85	2	75	21	23	20	35	1.96
48853620--48853803	6	29.8	6	75	15	153	18	17	14	49	1.80
48853648--48853780	19	6.8	19	73	19	112	18	18	15	48	1.81
48853623--48853687	25	2.6	25	92	0	103	16	20	16	46	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276