genome.fa.s12.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  150  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48853642--48853724	37	2.2	37	86	0	121	18	18	16	46	1.84
48853685--48853749	25	2.6	25	90	0	94	20	18	13	47	1.82
48853620--48853786	62	2.7	62	93	0	280	18	17	14	48	1.81
48853705--48853791	37	2.4	37	86	0	120	19	17	13	49	1.79
48853620--48853803	19	9.9	18	73	16	90	18	17	14	49	1.80
48856917--48856983	20	3.3	20	89	4	100	32	10	20	35	1.87
48856928--48856983	11	5.5	11	73	16	57	32	10	21	35	1.88
48857033--48857156	26	4.8	26	89	2	180	26	21	22	29	1.99
48863282--48863459	27	6.6	27	85	3	214	26	14	28	30	1.95
48863283--48863438	82	1.9	81	89	3	242	26	14	28	30	1.95
48863279--48863459	82	2.2	81	84	2	238	27	14	27	30	1.95
48865796--48865881	45	1.9	45	87	0	127	38	22	13	25	1.91
48865888--48866001	51	2.2	51	81	3	131	34	25	15	24	1.95
48866232--48866288	30	1.9	30	89	7	89	33	22	5	38	1.77
48871282--48871367	45	1.9	45	95	0	154	33	23	16	26	1.95
48871376--48871555	96	1.9	96	87	3	263	32	28	15	23	1.95
48871665--48871696	10	3.3	10	95	4	57	15	18	0	65	1.27
48871798--48871854	30	1.9	30	92	0	96	28	22	8	40	1.84
48881128--48881157	14	2.1	14	100	0	60	16	0	30	53	1.44
48894759--48894808	15	3.2	17	75	16	54	28	28	18	26	1.98
48895097--48895172	30	2.5	30	82	0	89	25	21	11	42	1.86
48895157--48895410	30	8.5	30	75	11	150	22	26	13	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48895185--48895423	60	4.0	60	74	14	174	23	26	14	35	1.93
48895096--48895426	179	1.8	179	84	2	450	23	25	14	36	1.93
48903163--48903214	16	3.5	16	66	28	51	50	23	7	19	1.73
48903164--48903220	28	2.0	28	100	0	114	50	24	7	17	1.70
48910369--48910649	141	2.0	141	99	0	553	36	9	17	36	1.83
48911086--48911119	3	11.3	3	87	0	50	61	0	5	32	1.20
48911086--48911119	12	2.8	12	100	0	68	61	0	5	32	1.20
48911931--48911966	17	2.1	17	89	0	54	2	11	25	61	1.43
48913241--48913417	39	4.5	39	94	0	300	45	22	4	28	1.72
48913266--48913371	22	5.3	21	63	35	56	45	22	3	28	1.70
48914133--48914223	38	2.4	37	89	3	137	31	14	24	29	1.94
48917485--48917622	20	6.9	19	65	19	59	39	13	31	15	1.86
48917485--48917645	40	4.0	40	79	6	182	39	14	31	15	1.87
48917485--48917643	80	2.0	80	83	2	203	38	13	31	15	1.87
48917565--48917629	20	3.2	20	74	8	69	38	15	33	12	1.85
48932351--48932442	30	3.0	31	88	3	132	43	4	28	23	1.73
48940756--48940892	42	3.3	42	87	4	197	30	26	14	28	1.95
48943364--48943485	43	2.8	44	82	2	165	44	2	27	25	1.67
48949588--48949739	27	5.6	27	92	3	232	30	28	13	26	1.94
48949588--48949739	55	2.8	55	93	0	250	30	28	13	26	1.94
48952151--48952328	27	6.6	27	84	3	205	29	28	15	26	1.96
48952172--48952327	82	1.9	81	88	3	233	29	28	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48953490--48953844	178	2.0	177	98	0	683	26	20	14	37	1.92
48969431--48969462	16	2.0	16	100	0	64	25	12	25	37	1.91
48969490--48969534	23	2.0	23	82	8	56	37	8	13	40	1.76
48974914--48975032	60	2.0	59	98	0	220	39	13	24	21	1.89
48977344--48977388	23	2.0	23	82	8	56	37	8	13	40	1.76
48978794--48978956	44	3.6	44	80	8	152	23	29	19	28	1.98
48978753--48979054	47	6.5	47	75	12	218	22	27	18	31	1.97
48989093--48989166	29	2.6	29	86	4	96	27	16	31	25	1.96
48995847--48995931	26	3.3	26	64	18	68	25	11	25	36	1.90
48995844--48996137	50	5.8	50	82	4	313	24	17	26	31	1.97
48995900--48996084	101	1.8	101	86	0	271	23	19	26	30	1.98
48995848--48996134	151	1.9	152	88	1	432	24	17	26	32	1.97
48995890--48996172	151	1.9	151	84	0	377	24	18	27	29	1.98
48997862--48997896	18	2.1	17	89	10	54	17	25	37	20	1.94
48999026--48999251	95	2.4	95	81	10	243	24	30	19	25	1.98
49002032--49002263	48	4.8	48	81	6	254	26	28	17	26	1.98
49002043--49002263	96	2.3	96	87	5	304	26	29	17	25	1.98
49008672--49008808	72	1.9	72	98	0	265	32	20	9	37	1.85
49009288--49009407	60	2.0	60	93	0	204	44	19	15	20	1.87
49009673--49009857	40	4.7	40	80	5	187	27	28	20	23	1.99
49009885--49009934	25	2.0	25	92	0	82	40	22	6	32	1.78
49012407--49012512	56	1.9	53	90	5	167	40	12	17	28	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49025606--49025641	13	2.8	13	95	0	63	36	30	22	11	1.89
49027721--49027759	21	1.9	20	84	5	51	15	30	28	25	1.96
49033600--49033660	31	2.0	31	93	0	104	31	9	27	31	1.89
49034529--49034593	34	1.9	34	87	0	94	26	16	23	33	1.96
49036779--49037359	46	12.6	44	76	11	467	25	28	19	26	1.98
49036778--49037359	138	4.2	138	99	0	1155	25	28	19	26	1.98
49038776--49038829	28	1.9	28	82	14	67	27	29	14	27	1.95
49039258--49039344	26	3.3	26	74	7	77	24	18	20	36	1.95
49054030--49054090	30	2.0	30	87	0	86	31	22	6	39	1.80
49055239--49055355	24	4.9	24	84	0	135	33	32	13	20	1.92
49056673--49056706	17	2.0	17	94	0	59	38	5	0	55	1.24
49057336--49057432	28	3.4	28	86	10	144	23	34	14	27	1.94
49057335--49057445	57	1.9	57	92	3	188	25	36	13	25	1.92
49057336--49057452	28	4.1	28	77	10	114	26	33	12	27	1.93
49059972--49060209	49	4.8	50	77	4	221	26	18	25	28	1.98
49059971--49060208	100	2.4	99	81	3	255	26	18	26	28	1.98
49064670--49064790	46	2.6	46	90	0	188	23	23	22	30	1.99
49071551--49071611	28	2.1	29	93	3	106	27	13	27	31	1.94
49075467--49075564	39	2.5	39	93	0	160	24	24	27	23	2.00
49076264--49076329	33	2.0	33	93	0	114	18	15	15	51	1.77
49083400--49083485	39	2.2	39	91	0	136	23	20	30	25	1.99
49083757--49083828	23	3.2	23	63	21	62	34	2	16	45	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49085712--49085807	47	2.0	47	94	4	167	29	12	13	44	1.80
49087062--49087125	31	2.1	31	90	0	101	25	23	15	35	1.94
49087332--49087485	24	6.4	24	91	4	240	28	20	19	31	1.97
49087542--49087618	9	7.9	9	72	16	64	35	22	7	35	1.83
49087538--49087620	20	4.2	20	93	0	148	32	20	10	36	1.87
49089682--49089943	45	5.9	45	85	1	350	24	20	27	26	1.99
49096413--49096508	47	2.0	47	89	0	147	31	12	11	44	1.78
49097318--49097536	45	4.9	45	89	1	332	23	21	27	27	1.99
49097318--49097536	89	2.4	90	92	0	350	23	21	27	27	1.99
49100808--49100832	11	2.3	11	100	0	50	72	0	0	28	0.86
49112054--49112163	43	2.6	43	92	0	184	9	27	33	30	1.88
49112030--49112163	43	3.2	43	86	4	166	11	25	33	29	1.90
49119186--49119370	55	3.4	55	82	8	211	22	23	16	37	1.93
49119358--49119479	47	2.6	47	93	0	208	27	22	13	36	1.91
49122377--49122410	6	5.7	6	85	0	50	23	26	0	50	1.50
49122796--49122839	21	2.1	21	95	0	79	20	22	6	50	1.72
49127658--49127773	42	2.7	41	80	7	117	21	16	28	33	1.95
49131788--49131837	11	4.7	11	75	7	50	34	14	22	30	1.93
49131788--49131845	21	2.8	20	78	5	62	34	12	20	32	1.90
49131893--49131964	25	3.0	24	80	13	76	29	25	22	23	1.99
49139823--49139859	18	2.1	19	90	10	60	59	5	8	27	1.48
49150325--49150495	93	1.8	93	92	0	288	29	27	20	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49150320--49150492	46	3.7	46	78	10	199	30	26	20	22	1.98
49157918--49158826	46	19.7	46	96	1	1655	30	26	19	23	1.98
49163458--49163504	24	2.0	24	83	8	60	59	0	2	38	1.09
49163483--49163528	20	2.4	19	85	7	67	71	0	4	23	1.03
49163495--49163537	19	2.3	18	80	11	50	76	0	9	13	1.01
49163566--49163606	11	3.5	12	83	12	50	78	0	21	0	0.76
49169750--49169796	24	2.0	24	83	8	60	59	0	2	38	1.09
49169775--49169820	20	2.4	19	85	7	67	71	0	4	23	1.03
49169787--49169829	19	2.3	18	80	11	50	76	0	9	13	1.01
49169858--49169898	11	3.5	12	83	12	50	78	0	21	0	0.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276