Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  193  of  276  ( 33102 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63884166--63884305
47
2.9
47
84
6
163
35
19
16
28
1.93
63889845--63889872
14
2.0
14
100
0
56
21
7
35
35
1.81
63892234--63892358
38
3.3
38
100
0
250
28
14
26
31
1.95
63892947--63893244
40
7.5
40
93
1
476
22
23
27
25
2.00
63894606--63894973
183
2.0
184
89
2
571
29
20
14
35
1.92
63895863--63896375
153
3.3
151
76
9
403
29
20
18
30
1.97
63896309--63896394
40
2.2
40
87
4
120
26
22
18
32
1.97
63896091--63896375
156
1.8
154
83
4
376
28
18
19
34
1.95
63896702--63896736
15
2.4
14
90
4
52
20
0
34
45
1.51
63896651--63896732
22
3.8
22
70
19
55
24
2
30
42
1.67
63896759--63896811
21
2.5
22
84
3
72
18
1
35
43
1.62
63896787--63896858
14
5.1
14
81
6
65
20
1
29
48
1.58
63896800--63896855
21
2.6
22
77
5
60
21
0
30
48
1.51
63896949--63896993
14
3.2
14
83
0
63
17
0
31
51
1.46
63897067--63897110
7
6.3
7
81
0
52
18
0
27
54
1.44
63897098--63897152
22
2.5
23
79
8
60
21
0
40
38
1.54
63897502--63897548
21
2.2
21
85
7
60
17
4
29
48
1.65
63897963--63898048
41
2.1
41
84
0
109
44
12
16
26
1.84
63898329--63898378
3
16.7
3
83
8
66
60
2
38
0
1.09
63902907--63902963
19
3.2
19
69
19
50
33
0
5
61
1.18
63904708--63904743
7
5.0
7
86
6
54
66
0
2
30
1.06
63904708--63904743
15
2.5
14
86
8
54
66
0
2
30
1.06
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63904761--63904849
10
8.9
10
72
17
60
62
1
3
32
1.19
63904765--63904833
17
4.2
16
78
9
68
62
0
4
33
1.15
63904761--63904858
40
2.3
42
81
10
112
64
1
3
31
1.16
63904761--63904849
19
4.4
20
72
19
69
62
1
3
32
1.19
63904767--63904860
30
3.2
29
78
15
104
63
1
3
31
1.17
63904765--63904862
15
6.5
15
73
24
82
63
1
3
32
1.17
63904895--63904965
24
3.2
24
67
22
73
57
0
8
33
1.29
63904888--63904981
42
2.3
42
94
1
163
58
0
7
34
1.26
63906417--63906780
44
8.3
44
80
3
376
28
29
15
26
1.96
63906473--63906780
132
2.3
130
87
5
433
27
29
15
26
1.96
63918775--63918810
7
5.0
7
86
6
54
66
0
2
30
1.06
63918769--63918979
15
13.9
15
68
17
109
60
1
4
33
1.26
63918828--63918916
10
8.9
10
72
17
60
62
1
3
32
1.19
63918832--63918900
17
4.2
16
78
9
68
62
0
4
33
1.15
63918828--63918925
40
2.3
42
81
10
112
64
1
3
31
1.16
63918828--63918916
19
4.4
20
72
19
69
62
1
3
32
1.19
63929494--63929529
17
2.1
17
90
10
56
19
0
0
80
0.71
63940192--63940318
43
3.0
44
74
13
122
36
23
14
25
1.93
63954428--63954480
25
2.1
25
100
0
106
41
24
3
30
1.72
63964628--63964652
12
2.1
12
100
0
50
16
16
24
44
1.86
63968782--63968806
11
2.3
11
100
0
50
28
0
0
72
0.86
63970881--63970905
11
2.3
11
100
0
50
72
0
0
28
0.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63970885--63970941
11
5.0
11
80
16
55
70
5
0
24
1.08
63970946--63970973
4
7.0
4
100
0
56
50
0
0
50
1.00
63976916--63977445
264
2.0
264
100
0
1060
29
22
16
31
1.95
63981583--63981684
42
2.4
43
78
6
109
27
23
19
29
1.98
63983572--63983600
12
2.4
12
100
0
58
37
10
6
44
1.65
63988750--63988788
18
2.2
18
95
0
69
23
25
10
41
1.86
63989201--63989252
25
2.1
24
83
16
63
42
1
0
55
1.10
63992697--63992745
14
3.6
13
89
8
71
44
0
12
42
1.41
63992703--63992763
27
2.3
26
83
8
79
40
0
14
44
1.46
63992769--63992811
10
4.3
10
82
11
61
20
6
2
69
1.23
63995008--63995093
45
1.9
44
86
6
120
32
27
15
24
1.95
63996794--63997006
117
1.8
117
81
4
268
26
20
17
35
1.95
63997100--63997209
33
3.3
34
82
9
129
40
14
0
45
1.45
63997093--63997209
34
3.7
33
84
7
145
40
16
0
43
1.48
63997251--63997331
34
2.3
35
85
6
103
48
23
2
25
1.64
64001742--64001795
27
2.0
27
85
0
72
38
7
14
38
1.75
64004052--64004105
27
2.0
27
85
0
72
38
7
14
38
1.75
64009931--64009979
25
1.9
26
84
12
66
53
8
2
36
1.43
64010350--64010374
4
6.2
4
100
0
50
0
24
0
76
0.80
64015042--64015358
47
6.7
47
77
11
294
24
30
18
26
1.98
64015044--64015274
96
2.4
94
85
8
306
25
32
17
24
1.97
64015041--64015355
143
2.2
141
80
9
340
24
30
18
26
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64030200--64030238
16
2.4
16
86
4
51
7
7
7
76
1.15
64043837--64043873
17
2.2
17
86
13
51
32
2
18
45
1.64
64066855--64067022
46
3.6
46
77
13
164
29
30
19
20
1.97
64066863--64067033
93
1.8
93
87
0
252
28
29
21
21
1.98
64075773--64076252
50
9.6
50
77
4
407
26
18
25
30
1.98
64075824--64076264
101
4.4
100
82
4
516
25
18
25
29
1.98
64075829--64076266
199
2.2
199
97
0
813
26
18
25
29
1.98
64079194--64079401
55
3.8
53
80
7
231
22
25
17
34
1.95
64079194--64079394
108
1.8
110
89
4
318
22
25
17
33
1.96
64081124--64081178
28
1.9
29
85
3
76
20
40
23
16
1.91
64089008--64089032
13
1.9
13
100
0
50
0
48
28
24
1.52
64089790--64089940
40
3.8
39
78
12
148
29
20
21
29
1.98
64090356--64090453
7
13.4
7
69
19
58
21
3
26
48
1.64
64090412--64090459
15
3.3
15
82
5
62
18
0
35
45
1.50
64090407--64090456
22
2.3
21
82
3
64
22
0
32
46
1.52
64090427--64090520
20
4.5
21
74
11
68
21
0
41
37
1.53
64090704--64090806
7
14.4
7
68
8
55
25
0
23
50
1.55
64090704--64090747
14
3.1
14
86
3
61
22
0
25
52
1.48
64090710--64090788
22
3.6
22
71
20
58
25
0
25
49
1.51
64090760--64090810
15
3.5
15
75
5
50
23
1
27
47
1.63
64090214--64090854
347
1.8
346
87
2
964
32
2
21
42
1.68
64090804--64091000
7
27.1
7
64
14
69
24
1
41
32
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64090843--64090901
23
2.7
23
81
5
68
28
0
40
30
1.57
64090837--64090999
15
11.1
15
67
12
70
23
0
43
31
1.59
64091100--64091147
17
2.8
17
84
9
62
52
6
2
39
1.39
64091267--64091301
16
2.1
17
94
5
63
25
0
5
68
1.11
64091391--64091601
115
1.8
114
83
7
275
27
13
22
36
1.92
64094361--64094512
47
3.2
47
98
0
286
27
30
7
33
1.85
64096499--64096955
227
2.0
227
98
0
878
35
16
10
37
1.82
64098391--64098546
40
3.9
40
92
0
249
24
30
23
21
1.99
64104172--64104268
43
2.2
43
85
1
122
48
17
1
32
1.54
64104224--64104362
36
3.9
36
98
0
260
42
17
2
36
1.65
64109506--64109534
14
2.1
14
93
6
51
34
0
10
55
1.34
64109896--64109935
21
1.9
21
84
0
53
40
17
27
15
1.89
64122777--64122835
23
2.5
23
83
2
73
13
20
27
38
1.90
64131876--64132099
40
5.6
40
91
3
351
26
20
28
23
1.99
64131876--64132099
82
2.8
80
90
3
351
26
20
28
23
1.99
64156390--64156486
38
2.6
37
85
6
124
34
15
12
38
1.85
64159283--64159372
40
2.2
40
82
3
110
30
21
21
27
1.98
64159389--64159466
36
2.1
36
81
11
88
34
15
11
38
1.83
64163507--64163548
22
2.0
22
90
4
68
71
0
9
19
1.13
64164356--64164512
29
5.4
29
80
3
181
36
12
28
22
1.91
64164366--64164541
58
3.0
58
85
3
176
35
13
27
23
1.93
64164373--64164570
87
2.3
84
85
8
247
35
14
28
22
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64164416--64164625
29
7.2
29
79
7
185
36
14
27
22
1.93
64165195--64165224
11
2.7
11
94
0
51
23
0
0
76
0.78
64166380--64166553
46
3.8
45
76
15
142
25
18
31
24
1.98
64173597--64173654
30
1.9
30
89
0
89
32
10
27
29
1.90
64178254--64178305
26
2.0
26
100
0
104
34
26
7
30
1.85
64182756--64182786
12
2.6
12
94
0
53
16
51
22
9
1.73
64185934--64186015
26
3.2
26
98
0
155
34
26
7
31
1.84
64191933--64191989
21
2.7
22
78
10
66
38
1
21
38
1.64
64193155--64193544
38
10.3
38
76
9
323
33
25
19
21
1.97
64193195--64193566
186
2.0
186
98
0
726
33
24
19
23
1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276