genome.fa.s12.2.7.7.80.10.50.1000.268.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  268  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88865495--88865577	25	3.4	25	89	1	114	25	21	22	30	1.99
88865480--88865577	25	4.0	24	81	7	90	25	21	23	29	1.99
88865791--88865968	27	6.7	27	87	1	234	25	21	17	34	1.96
88865791--88865972	54	3.4	54	89	1	269	25	21	18	34	1.96
88865964--88866111	27	5.5	27	76	6	131	28	8	18	43	1.80
88865972--88866111	54	2.6	53	84	4	156	30	8	18	42	1.80
88866013--88866125	27	4.2	27	78	7	113	30	7	21	41	1.79
88866076--88866196	54	2.3	54	82	1	136	38	7	20	33	1.81
88866104--88866202	27	3.7	26	83	4	126	39	8	22	30	1.83
88868588--88868662	25	3.0	25	86	5	73	26	18	26	28	1.98
88868601--88868662	25	2.5	25	94	0	106	27	17	30	24	1.97
88868601--88868670	25	2.8	25	88	0	104	25	20	27	27	1.99
88868876--88869117	27	9.0	27	86	0	322	24	20	19	36	1.95
88869120--88869273	27	5.7	27	83	3	175	31	7	20	40	1.81
88869252--88869324	27	2.7	27	83	8	103	38	6	21	32	1.80
88869134--88869284	81	1.9	81	84	2	205	31	7	21	39	1.81
88875346--88875427	43	1.9	43	92	0	137	29	15	28	26	1.96
88875489--88875558	31	2.3	31	89	0	104	54	20	8	17	1.68
88876304--88876332	13	2.1	14	93	6	51	55	10	0	34	1.34
88880412--88880454	19	2.3	19	92	4	70	30	16	20	32	1.95
88881479--88881551	9	8.1	9	73	11	60	32	2	21	42	1.67
88881511--88881603	18	5.3	17	68	10	53	33	1	17	48	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88881496--88881656	34	4.5	36	83	10	195	33	1	16	49	1.54
88881587--88881643	13	4.3	13	75	20	64	35	1	10	52	1.46
88881502--88881656	74	2.2	70	85	4	211	33	1	15	49	1.53
88881649--88881674	9	2.9	9	100	0	52	23	0	23	53	1.46
88886934--88887643	47	14.7	47	92	4	1116	32	8	30	29	1.87
88887310--88887335	13	2.0	13	100	0	52	23	15	38	23	1.92
88887261--88887382	60	2.0	61	95	3	219	31	9	31	27	1.89
88887762--88887840	37	2.1	37	88	0	113	24	17	31	26	1.97
88889778--88889806	8	3.8	8	95	4	51	24	0	34	41	1.55
88890186--88890352	41	4.1	41	79	3	169	22	16	20	40	1.91
88890165--88890352	82	2.3	82	81	3	209	24	18	19	37	1.94
88891086--88891147	26	2.3	26	83	8	81	43	22	17	16	1.87
88892487--88892845	93	3.8	93	79	11	351	26	21	29	22	1.99
88892626--88892795	47	3.7	45	79	10	184	27	21	30	21	1.98
88897637--88897838	29	7.0	29	78	7	151	22	27	13	36	1.92
88897680--88897865	86	2.1	87	84	4	234	22	27	13	36	1.92
88897709--88897922	29	7.4	29	79	2	189	24	27	12	35	1.91
88897651--88897896	115	2.1	116	89	1	368	22	28	12	36	1.91
88909895--88909935	21	1.9	21	90	5	64	73	2	14	9	1.19
88918675--88918796	60	2.0	60	93	0	208	7	22	28	41	1.80
88919111--88919189	27	3.0	26	75	8	70	37	26	8	26	1.86
88919140--88919260	54	2.2	54	83	0	134	27	23	9	38	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88919170--88919287	27	4.4	27	91	0	182	23	21	11	43	1.85
88919275--88919440	27	6.2	27	81	3	147	39	22	9	29	1.85
88919194--88919376	54	3.4	54	79	1	125	32	20	10	36	1.87
88919289--88919440	54	2.8	54	83	3	164	40	21	9	28	1.84
88919275--88919440	81	2.1	80	85	5	219	39	22	9	29	1.85
88919428--88919618	27	7.1	27	85	4	260	36	17	20	25	1.95
88919428--88919620	81	2.4	82	89	1	300	35	18	20	25	1.95
88919825--88919916	25	3.7	25	94	2	150	25	26	23	25	2.00
88919853--88919930	25	3.1	25	85	7	79	26	23	24	25	2.00
88925540--88925582	21	2.2	20	84	15	56	16	4	18	60	1.52
88927665--88927742	5	15.0	5	72	17	52	37	2	2	57	1.26
88927759--88927831	16	3.9	18	69	26	53	34	0	4	61	1.15
88931713--88931819	27	3.9	27	82	9	119	15	22	22	39	1.92
88931713--88931822	54	2.0	54	84	3	141	15	22	21	40	1.91
88932880--88932913	10	3.3	10	84	8	50	29	8	8	52	1.62
88939581--88939691	27	4.1	27	81	5	127	17	24	21	36	1.94
88943248--88943336	32	2.8	32	75	13	83	29	6	24	39	1.81
88943475--88943618	26	5.5	26	73	9	139	25	10	27	36	1.89
88943500--88943639	27	5.3	27	72	10	135	27	10	25	37	1.89
88943475--88943643	53	3.2	53	99	0	329	26	10	26	36	1.89
88950084--88950145	31	2.0	31	100	0	124	32	6	6	54	1.51
88954085--88954138	21	2.7	20	77	11	56	35	11	12	40	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88958310--88958339	3	10.0	3	100	0	60	66	0	0	33	0.92
88959428--88959490	30	2.1	30	84	0	81	14	26	33	25	1.94
88968990--88969339	48	7.4	48	75	5	302	25	26	19	28	1.98
88969061--88969346	96	3.0	96	82	3	342	25	25	18	30	1.98
88971418--88971467	20	2.5	20	90	0	73	34	12	32	22	1.90
88975679--88975842	42	3.9	42	84	6	206	31	15	23	29	1.95
88975679--88975837	85	1.9	84	85	6	223	31	15	23	29	1.95
88990013--88990081	35	2.0	34	100	0	129	17	26	23	31	1.96
88993514--88993929	123	3.5	122	84	10	628	66	4	12	15	1.39
88993710--88993805	48	2.0	46	90	7	149	66	5	15	12	1.41
88993648--88993863	109	2.0	108	93	0	369	67	4	13	14	1.39
88993514--88993929	61	7.0	61	84	9	583	66	4	12	15	1.39
88995103--88995144	17	2.5	17	88	7	59	38	0	2	59	1.10
88995117--88995213	17	5.8	16	69	25	67	36	2	4	57	1.29
88995119--88995251	67	1.9	67	86	7	185	36	3	6	54	1.42
88996487--88996542	27	2.1	27	96	0	103	39	0	17	42	1.50
88996751--88996776	3	8.7	3	100	0	52	34	0	0	65	0.93
88997334--88997379	22	2.1	22	83	0	56	54	8	17	19	1.68
88997656--88997697	18	2.2	20	83	8	52	42	2	16	38	1.61
88997713--88997796	40	2.1	40	81	0	96	34	9	15	40	1.80
88997999--88998109	45	2.5	45	80	2	125	23	17	15	44	1.86
89008016--89008251	55	4.4	54	75	10	200	21	25	18	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89020487--89020532	22	2.1	22	84	8	58	56	2	19	21	1.52
89028557--89029002	223	2.0	223	98	0	865	28	25	17	29	1.97
89033752--89034079	28	11.9	27	90	3	269	31	28	14	26	1.94
89033752--89034079	55	5.9	56	93	1	513	31	28	14	26	1.94
89033752--89034079	138	2.4	138	93	0	559	31	28	14	26	1.94
89033752--89034079	83	4.0	83	91	2	509	31	28	14	26	1.94
89036607--89036759	63	2.3	64	82	8	175	24	27	19	28	1.99
89036607--89036759	66	2.3	63	81	8	164	24	27	19	28	1.99
89044704--89044840	40	3.4	40	92	0	229	29	30	18	21	1.97
89047766--89047885	60	2.0	60	98	0	231	35	7	19	38	1.80
89047782--89047910	60	2.2	60	87	5	181	35	7	16	40	1.77
89048928--89049196	46	5.8	46	79	11	316	22	20	28	28	1.98
89048924--89049188	93	2.8	93	97	0	494	22	20	28	28	1.99
89049480--89049694	107	2.0	107	100	0	430	22	20	16	40	1.91
89050132--89050280	81	1.8	81	95	0	271	32	16	16	34	1.91
89050302--89050460	80	2.0	80	90	2	248	36	12	18	32	1.89
89055846--89055925	15	5.4	15	80	7	83	10	18	13	57	1.64
89058311--89058486	46	3.8	45	81	10	212	21	21	29	28	1.98
89058307--89058478	93	1.8	93	94	0	308	20	21	30	27	1.98
89065042--89065206	39	4.2	39	92	0	267	25	23	27	23	2.00
89069464--89069506	16	2.7	16	81	0	59	53	20	18	6	1.67
89069719--89069831	29	4.0	29	86	6	142	27	15	29	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89076754--89076814	30	2.0	30	90	0	95	29	24	6	39	1.80
89077873--89077981	29	3.8	29	78	3	96	26	15	30	27	1.96
89077895--89077979	29	3.0	29	81	8	102	25	12	30	30	1.93
89080203--89080239	18	2.1	18	90	5	58	37	16	0	45	1.47
89081263--89081327	32	2.0	33	85	5	89	43	26	16	13	1.86
89082052--89082145	27	3.5	27	82	8	95	30	11	14	42	1.82
89092234--89092646	46	8.7	48	72	11	257	23	29	18	27	1.98
89094563--89094657	45	2.1	45	92	0	154	36	32	10	20	1.86
89100635--89100814	46	3.9	46	73	9	168	23	27	18	30	1.98
89103034--89103093	27	2.2	27	87	0	93	33	13	20	33	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276