genome.fa.s12.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  131  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42379058--42379098	18	2.2	18	91	4	64	14	14	0	70	1.16
42380388--42380452	32	2.0	32	96	0	121	32	6	23	38	1.79
42382268--42382310	21	2.0	21	95	0	77	41	9	16	32	1.80
42385047--42385133	39	2.2	39	93	0	147	27	26	24	21	1.99
42393744--42393851	56	1.9	56	90	0	171	31	28	13	25	1.94
42399722--42399840	46	2.5	46	82	5	141	30	19	26	24	1.98
42399860--42400032	49	3.6	49	77	2	179	26	22	27	23	2.00
42406135--42406193	30	2.0	30	82	0	73	35	8	20	35	1.83
42406836--42406967	49	2.7	49	82	4	167	27	20	28	23	1.99
42409836--42409879	19	2.3	19	88	0	61	4	2	31	61	1.28
42410844--42410908	27	2.4	28	85	12	82	30	9	16	43	1.80
42413493--42413531	15	2.6	14	80	11	51	51	7	0	41	1.31
42413619--42413687	10	7.1	9	74	12	57	57	1	7	33	1.35
42413627--42413681	19	2.8	19	81	10	67	56	0	9	34	1.31
42413851--42413878	14	2.0	14	100	0	56	50	0	0	50	1.00
42415082--42415116	7	4.9	7	86	6	52	40	0	2	57	1.14
42417122--42417197	24	3.2	24	74	9	68	39	6	2	51	1.42
42417150--42417197	22	2.1	23	85	11	64	41	6	0	52	1.27
42417148--42417201	23	2.3	24	79	17	69	42	5	0	51	1.25
42418527--42418747	49	4.6	48	73	11	161	27	25	17	29	1.98
42418667--42418794	46	2.7	48	85	6	163	22	27	20	29	1.98
42422147--42422449	55	5.6	54	81	5	344	23	25	16	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42422147--42422439	108	2.7	108	93	0	487	23	24	16	35	1.95
42422639--42422725	44	2.0	44	84	8	115	26	26	10	36	1.88
42425514--42425685	79	2.2	79	84	3	220	25	21	27	25	1.99
42425461--42425683	40	5.6	39	81	8	209	25	21	27	25	1.99
42425541--42425718	79	2.2	80	80	3	191	25	21	28	24	1.99
42429583--42429627	24	2.0	22	82	8	54	53	2	2	42	1.25
42429642--42429758	37	3.2	36	75	17	107	54	4	1	39	1.30
42438999--42439075	39	2.0	39	100	0	154	28	28	15	27	1.96
42440828--42441067	43	5.6	42	89	3	338	31	32	25	10	1.89
42441060--42441143	38	2.2	38	84	0	114	32	26	20	21	1.98
42444979--42445025	22	2.1	22	84	4	58	46	0	2	51	1.13
42452792--42452829	19	2.0	19	100	0	58	36	10	15	36	1.82
42455083--42455268	40	4.7	40	86	5	225	26	26	22	24	2.00
42476724--42476875	40	3.8	39	89	5	216	22	23	29	25	1.99
42476724--42476875	79	1.9	80	86	6	220	22	23	29	25	1.99
42481138--42481322	47	3.9	47	89	0	262	34	10	29	25	1.90
42481527--42481639	37	3.1	37	96	0	199	22	19	30	27	1.98
42488746--42488936	40	4.8	39	87	7	244	22	24	28	25	1.99
42488746--42488948	79	2.5	79	85	7	261	22	24	28	25	1.99
42494441--42494571	65	2.0	65	96	0	244	41	17	16	25	1.89
42494574--42494630	26	2.2	26	81	9	62	28	19	17	35	1.94
42494877--42494917	10	4.2	10	84	15	59	29	0	0	70	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42494877--42494917	16	2.6	16	88	11	66	29	0	0	70	0.87
42495888--42495973	42	2.0	42	95	0	154	56	9	26	6	1.56
42496563--42496606	19	2.4	18	85	7	54	40	9	0	50	1.34
42499365--42500433	45	23.9	45	98	0	1970	26	29	19	24	1.99
42505109--42505294	55	3.4	54	81	7	207	23	24	17	34	1.96
42506537--42506801	94	2.8	91	77	13	288	21	30	20	27	1.98
42506541--42506801	47	5.6	46	72	12	194	21	30	20	27	1.98
42511260--42511337	34	2.3	34	88	4	113	30	21	17	29	1.97
42516460--42516518	28	2.1	28	87	0	82	40	6	11	40	1.68
42516482--42516619	14	9.9	14	74	3	89	38	8	18	34	1.81
42516460--42516560	42	2.4	42	78	3	114	40	6	14	37	1.73
42518004--42518065	31	2.0	31	93	0	106	38	6	22	32	1.80
42518880--42518935	27	2.1	27	86	0	76	42	17	19	19	1.89
42520129--42520227	28	3.4	28	73	13	81	26	26	23	24	2.00
42526537--42526720	40	4.6	40	81	6	212	26	23	25	24	2.00
42526537--42526720	80	2.3	80	85	3	237	26	23	25	24	2.00
42528428--42528780	27	13.4	27	78	7	332	23	22	20	33	1.97
42528428--42528780	54	6.7	54	82	7	404	23	22	20	33	1.97
42528511--42528546	18	2.0	18	88	0	54	22	22	22	33	1.97
42528492--42528577	45	1.9	45	97	0	163	20	18	24	36	1.95
42528457--42528765	80	4.1	72	75	8	224	23	22	21	33	1.98
42528429--42528780	134	2.7	134	80	4	371	23	22	19	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42552097--42552262	60	2.7	62	76	12	175	27	18	25	29	1.98
42566340--42566391	26	2.0	26	88	0	77	11	15	40	32	1.83
42578874--42578956	40	2.1	40	86	4	114	36	37	10	15	1.83
42580152--42580205	27	2.0	26	85	3	72	22	20	20	37	1.95
42589548--42589775	40	5.7	40	96	0	411	21	26	20	31	1.98
42597160--42597211	27	2.0	26	88	3	77	19	23	19	38	1.93
42599360--42599633	40	6.8	40	93	0	458	23	29	21	25	1.99
42607840--42608112	40	6.8	40	92	0	440	23	29	22	24	1.99
42609424--42609613	40	4.7	40	86	2	254	22	26	20	30	1.98
42609424--42609613	82	2.3	82	87	1	258	22	26	20	30	1.98
42621621--42621792	46	3.7	46	75	13	181	29	27	19	22	1.98
42621626--42621796	93	1.8	93	92	0	288	29	28	19	22	1.98
42623540--42623571	16	2.0	16	100	0	64	50	31	6	12	1.65
42630371--42630595	40	5.6	40	86	3	299	23	22	28	25	1.99
42630375--42630595	83	2.7	80	86	5	286	22	23	28	25	1.99
42643421--42643463	19	2.2	19	83	8	50	18	30	0	51	1.47
42644111--42644225	29	4.0	29	80	6	119	27	14	28	28	1.95
42646626--42646661	14	2.6	14	95	0	63	30	16	36	16	1.91
42647154--42647184	16	1.9	16	93	0	53	51	32	6	9	1.60
42647807--42647849	19	2.2	19	83	8	50	16	27	2	53	1.55
42648505--42648604	29	3.5	29	81	1	112	29	15	27	29	1.96
42651135--42651230	40	2.5	38	81	6	120	38	38	9	13	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42658547--42658633	43	2.0	43	95	0	156	37	18	11	32	1.86
42671173--42671222	25	2.0	25	84	4	64	40	12	10	38	1.76
42676480--42676531	22	2.4	22	87	6	79	21	28	34	15	1.94
42677598--42677650	25	2.1	26	96	3	99	66	7	11	15	1.44
42679965--42680033	6	11.7	6	81	7	79	76	0	4	18	0.94
42679965--42680033	23	2.9	24	87	6	88	76	0	4	18	0.94
42683208--42683469	39	6.7	40	88	7	337	24	27	22	25	2.00
42691237--42691459	79	2.8	78	83	7	272	24	27	22	25	2.00
42691237--42691459	39	5.7	40	87	6	280	24	27	22	25	2.00
42695293--42695415	47	2.6	47	94	0	219	27	30	19	22	1.98
42697857--42697935	29	2.7	29	78	9	88	55	15	17	11	1.68
42697857--42697926	15	4.7	15	77	10	81	57	12	18	11	1.65
42712563--42712650	44	2.0	44	82	4	106	30	26	19	23	1.98
42714207--42714298	27	3.4	27	81	0	112	30	22	6	40	1.79
42714288--42714525	27	8.8	26	72	9	113	38	20	11	29	1.88
42714288--42714529	81	3.0	79	80	6	229	39	20	11	28	1.87
42714288--42714526	54	4.4	52	75	9	176	38	20	11	29	1.88
42714581--42714661	27	3.0	27	87	0	117	33	19	22	24	1.97
42715244--42715333	45	2.0	46	88	2	137	24	15	31	28	1.96
42717395--42717486	27	3.4	27	89	0	130	29	25	6	39	1.81
42717518--42717744	27	8.4	27	80	6	237	40	20	8	30	1.82
42717485--42717723	54	4.5	51	73	13	160	38	19	10	31	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42717476--42717740	81	3.3	80	78	8	252	38	20	10	31	1.85
42717796--42717956	27	6.0	27	82	1	198	36	19	19	23	1.95
42719131--42719165	10	3.5	10	88	0	52	2	8	0	88	0.61
42719131--42719167	19	1.9	19	89	10	58	2	10	0	86	0.67
42721071--42721220	55	2.8	54	80	4	149	26	15	29	28	1.96
42721043--42721220	27	6.6	27	77	6	146	25	15	28	30	1.96
42721044--42721199	82	1.9	81	81	6	190	25	16	28	30	1.96
42729083--42729232	55	2.8	54	80	4	149	26	15	29	28	1.96
42729055--42729232	27	6.6	27	77	6	146	25	15	28	30	1.96
42729056--42729211	82	1.9	81	81	6	190	25	16	28	30	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276