genome.fa.s12.2.7.7.80.10.50.1000.273.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  273  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90450222--90450408	93	2.0	92	94	3	331	34	11	17	36	1.86
90456497--90456539	19	2.3	19	87	0	59	39	2	6	51	1.42
90458071--90458121	11	4.5	11	74	13	50	39	0	0	60	0.97
90461899--90461935	15	2.5	16	87	12	53	21	24	10	43	1.84
90470006--90470090	44	1.9	44	90	0	134	31	18	24	24	1.98
90470077--90470587	205	2.5	205	91	0	808	33	17	20	28	1.95
90475914--90475950	15	2.5	16	87	12	53	21	24	10	43	1.84
90483926--90484018	44	2.1	44	89	0	141	30	16	29	24	1.96
90484011--90484512	206	2.4	206	93	0	851	32	17	20	29	1.95
90486342--90486392	11	4.5	11	74	13	50	39	0	0	60	0.97
90487533--90487559	13	2.1	13	100	0	54	40	0	14	44	1.46
90491555--90491783	107	2.1	107	98	0	440	40	16	12	31	1.85
90493011--90493040	10	2.8	11	90	10	53	70	0	0	30	0.88
90493469--90493502	16	2.1	16	88	0	50	58	5	5	29	1.45
90493990--90494051	29	2.2	27	82	8	70	33	9	0	56	1.32
90494024--90494105	27	3.0	27	78	15	80	26	7	0	65	1.18
90494016--90494074	21	3.0	21	81	13	63	27	8	0	64	1.22
90494047--90494128	23	3.2	26	75	22	75	28	8	0	63	1.23
90494138--90494194	5	10.6	5	76	12	51	28	17	1	52	1.54
90494343--90494376	10	3.3	10	84	8	50	26	0	0	73	0.83
90494340--90494373	11	3.2	11	83	8	52	29	0	0	70	0.87
90494599--90494667	5	12.6	5	80	17	75	21	17	0	60	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90494603--90494678	16	4.2	17	70	16	55	26	14	0	59	1.36
90494598--90494672	39	1.9	39	88	0	114	24	16	0	60	1.36
90494663--90494793	20	5.9	20	69	23	77	25	12	0	62	1.29
90494662--90494958	21	12.6	21	69	23	98	25	12	0	61	1.31
90494775--90495036	27	10.4	27	77	16	276	26	11	0	62	1.29
90494654--90495018	94	3.8	94	80	12	411	25	11	0	63	1.28
90494925--90495069	75	1.9	76	87	1	211	26	11	0	62	1.30
90494654--90495026	48	7.8	48	77	11	388	25	11	0	63	1.28
90494802--90495069	48	5.4	48	69	19	126	25	11	0	62	1.30
90494776--90495068	27	11.6	26	78	15	203	25	11	0	62	1.28
90494654--90495059	121	3.3	119	79	9	326	25	12	0	62	1.29
90502219--90502312	46	2.0	46	97	0	179	34	13	14	37	1.86
90504634--90504688	26	2.2	26	87	9	78	29	5	3	61	1.35
90504634--90504695	26	2.4	25	82	12	72	33	4	3	58	1.36
90508951--90509020	22	3.2	21	75	13	70	67	1	4	27	1.18
90512294--90512346	21	2.5	21	87	6	81	41	39	11	7	1.69
90512799--90512889	45	2.0	45	91	0	146	32	14	13	39	1.84
90512887--90512959	36	2.0	36	89	0	110	32	8	9	49	1.65
90513069--90513141	36	2.0	36	91	0	119	32	9	9	47	1.68
90512833--90513540	182	3.8	183	94	2	1172	33	12	11	41	1.80
90513132--90513212	42	1.9	42	90	7	128	33	18	8	39	1.81
90513253--90513325	36	2.0	36	86	0	101	34	8	8	49	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90513257--90513396	43	3.5	41	79	9	128	33	13	9	43	1.76
90513445--90513517	36	2.0	36	89	0	110	32	9	10	46	1.71
90513586--90513676	36	2.5	36	83	3	103	32	9	8	48	1.67
90513359--90513664	141	2.1	143	91	4	490	33	11	11	42	1.78
90514352--90514487	46	3.0	47	89	2	188	22	24	14	38	1.91
90516611--90516659	11	4.3	11	82	10	62	59	6	0	34	1.22
90517194--90517238	18	2.6	17	80	10	56	46	4	2	46	1.35
90517560--90517654	47	2.0	48	97	2	183	34	12	4	48	1.61
90517768--90517841	36	2.1	36	100	0	148	21	8	16	54	1.68
90518034--90518120	43	2.0	43	97	0	165	47	12	20	19	1.82
90518486--90518782	149	2.0	149	98	0	576	26	12	20	40	1.88
90518900--90519254	178	2.0	178	97	0	665	28	12	24	34	1.92
90521179--90521220	21	2.0	21	100	0	84	33	19	9	38	1.84
90521224--90521266	22	2.0	22	86	4	61	34	0	11	53	1.37
90523943--90524000	26	2.2	26	90	6	91	36	22	5	36	1.77
90525466--90525528	32	1.9	33	84	9	85	28	4	7	58	1.47
90527586--90527643	27	2.2	27	84	9	75	27	3	3	65	1.25
90527596--90527651	27	2.0	28	86	10	80	30	3	3	62	1.29
90528070--90528096	9	3.0	9	100	0	54	55	0	0	44	0.99
90528701--90528751	26	1.9	27	88	4	77	29	5	0	64	1.17
90529003--90529028	10	2.6	10	100	0	52	19	7	19	53	1.68
90530627--90530696	23	3.0	23	81	6	79	50	17	17	15	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90531456--90531698	43	5.6	43	81	7	235	32	18	20	27	1.97
90531456--90531693	129	1.8	131	85	5	340	33	18	20	28	1.96
90531456--90531698	87	2.8	86	78	6	235	32	18	20	27	1.97
90536412--90536483	9	7.7	9	72	9	63	29	1	22	47	1.60
90536427--90536501	18	4.0	18	75	5	60	30	1	21	46	1.59
90536416--90536501	39	2.2	38	86	12	113	30	1	20	47	1.58
90536428--90536480	27	2.0	27	88	0	79	30	1	20	47	1.61
90536523--90536976	241	1.9	241	98	0	881	31	15	18	34	1.92
90537099--90537148	23	2.2	23	100	0	100	34	16	16	34	1.90
90538190--90538227	14	2.7	14	92	8	60	42	10	0	47	1.38
90539720--90539757	19	2.0	19	100	0	76	21	26	31	21	1.98
90539775--90539826	19	2.7	20	84	6	79	32	0	38	28	1.57
90541106--90541162	30	1.9	30	89	3	89	19	8	36	35	1.83
90541693--90541789	41	2.4	41	75	1	97	30	24	15	28	1.96
90541743--90541846	40	2.6	41	89	4	149	24	22	17	36	1.94
90544100--90544167	35	1.9	36	93	3	120	17	48	2	30	1.62
90544284--90544324	21	2.0	21	95	0	73	41	36	12	9	1.76
90544792--90544882	45	2.0	45	89	0	137	35	13	10	40	1.79
90544826--90545346	184	2.8	184	95	0	920	35	12	10	41	1.78
90545250--90545322	36	2.0	36	91	0	119	32	9	9	47	1.68
90545250--90545340	36	2.5	36	85	7	105	34	10	9	45	1.73
90545390--90545434	18	2.6	17	80	10	56	46	4	2	46	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90548850--90548892	22	2.0	22	86	4	61	34	0	11	53	1.37
90563041--90563065	12	2.1	12	100	0	50	36	32	0	32	1.58
90563078--90563122	22	2.1	22	87	4	65	40	20	2	37	1.65
90563374--90563618	49	5.1	49	74	9	146	21	26	16	35	1.94
90570215--90570256	22	1.9	22	85	9	59	30	7	0	61	1.22
90573265--90573296	2	16.0	2	100	0	64	50	0	50	0	1.00
90575619--90575647	15	1.9	15	100	0	58	37	20	6	34	1.80
90576904--90576966	30	2.0	32	85	11	87	36	0	11	52	1.37
90576904--90576966	29	2.1	29	82	14	74	36	0	11	52	1.37
90587201--90587497	89	3.4	88	79	9	290	35	18	16	30	1.92
90587436--90587577	73	1.9	73	100	0	284	35	16	14	33	1.90
90587534--90587752	90	2.4	91	83	4	282	36	16	15	31	1.90
90587763--90587956	78	2.6	76	79	11	197	36	19	13	30	1.91
90587961--90588165	71	2.8	74	76	13	199	33	21	15	29	1.94
90587962--90589141	73	15.9	75	87	8	353	34	17	15	32	1.91
90587763--90588346	238	2.4	238	94	2	1001	34	19	15	30	1.93
90588232--90589147	73	12.5	73	98	0	1694	34	16	15	33	1.90
90601086--90601140	25	2.3	23	78	12	58	43	3	16	36	1.65
90609943--90610053	47	2.4	47	80	6	136	35	23	16	25	1.95
90617657--90617691	13	2.8	12	91	8	52	77	0	2	20	0.90
90617657--90617691	6	5.5	6	90	10	52	77	0	2	20	0.90
90617942--90618316	3	128.0	3	69	14	164	64	2	6	27	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90618189--90618232	17	2.6	17	85	10	63	65	0	4	29	1.12
90618166--90618233	14	4.8	14	71	25	54	60	1	5	32	1.30
90621730--90621772	21	2.0	21	100	0	86	39	13	4	41	1.66
90622093--90622173	37	2.3	36	87	6	112	39	22	9	28	1.86
90625229--90625260	16	2.0	16	100	0	64	18	18	18	43	1.88
90627233--90627897	241	2.8	240	84	3	828	32	11	18	37	1.87
90627864--90627897	17	1.9	18	88	5	52	41	11	2	44	1.56
90634606--90634647	20	2.0	22	90	9	70	38	0	0	61	0.96
90640558--90640613	23	2.5	22	77	8	67	37	3	1	57	1.27
90642181--90642279	50	1.9	53	89	6	159	29	32	22	16	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276