genome.fa.s12.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  152  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49505034--49505169	31	4.4	31	85	3	159	19	16	13	49	1.80
49507410--49507636	53	4.2	52	75	9	186	19	24	17	38	1.93
49526238--49526323	40	2.2	39	84	10	113	37	34	13	13	1.85
49526248--49526323	40	1.9	40	89	5	118	36	34	14	14	1.87
49527023--49527105	41	2.0	41	92	0	139	22	31	13	32	1.92
49530252--49530281	15	2.1	15	93	6	53	36	26	6	30	1.82
49532613--49532689	24	3.4	23	72	18	81	46	22	6	24	1.75
49532650--49532691	19	2.2	19	95	0	75	45	19	9	26	1.80
49533749--49533830	34	2.4	34	89	0	119	24	25	23	26	2.00
49544077--49544175	49	2.1	48	90	5	157	40	8	8	43	1.64
49548356--49548386	16	1.9	16	93	0	53	35	12	9	41	1.76
49548540--49548694	43	3.7	44	72	16	121	32	27	15	24	1.95
49551436--49551494	28	2.1	28	90	0	91	33	27	6	32	1.83
49558940--49558976	16	2.3	16	100	0	74	32	27	18	21	1.97
49558983--49559248	46	5.7	46	74	16	217	30	28	18	22	1.97
49559038--49559202	47	3.5	46	75	17	169	30	27	17	24	1.97
49558992--49559253	93	2.8	93	90	0	409	29	28	18	23	1.98
49561274--49561336	27	2.3	27	80	0	81	34	19	20	25	1.96
49561335--49561639	27	11.3	27	77	7	208	40	20	8	30	1.82
49561351--49561529	80	2.2	81	79	4	220	42	20	7	29	1.79
49561351--49561554	80	2.5	80	74	8	209	42	20	7	29	1.79
49561351--49561601	134	1.9	134	84	5	337	41	19	8	29	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49561883--49561998	41	2.8	41	83	5	153	19	24	30	25	1.98
49562140--49562204	22	3.0	22	71	8	60	21	23	21	33	1.97
49562409--49562451	22	2.0	22	90	0	68	13	16	20	48	1.80
49564427--49564464	19	2.0	19	100	0	76	36	0	21	42	1.53
49564741--49564817	28	2.8	28	84	4	93	31	9	28	31	1.88
49565320--49565352	13	2.5	13	95	0	57	27	0	15	57	1.38
49568653--49568806	43	3.7	43	77	15	135	28	26	18	26	1.98
49569401--49569430	15	2.0	15	93	0	51	53	16	3	26	1.59
49571712--49571763	15	3.2	15	73	19	50	46	0	0	53	1.00
49571725--49571761	19	1.9	19	88	0	56	51	0	0	48	1.00
49571801--49571831	16	2.0	16	93	6	55	38	0	0	61	0.96
49573963--49574013	25	2.0	26	88	3	77	41	9	7	41	1.67
49575052--49575083	16	2.0	16	100	0	64	25	31	12	31	1.92
49576330--49576405	38	2.0	38	100	0	152	15	31	7	44	1.75
49577724--49577899	46	3.8	46	76	10	187	29	27	21	22	1.99
49577732--49577903	93	1.8	93	89	0	272	28	27	21	22	1.99
49577775--49577918	46	3.1	46	70	18	118	31	27	19	22	1.98
49579401--49579527	27	4.8	27	77	13	120	31	11	22	34	1.90
49579422--49579518	26	3.7	26	79	9	99	30	11	22	35	1.90
49579657--49579732	27	2.9	27	84	5	93	39	11	21	27	1.88
49584866--49584996	27	4.9	27	69	16	69	35	12	22	30	1.90
49584888--49584993	27	3.9	27	79	8	117	33	12	22	32	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49585123--49585205	27	3.1	27	92	0	139	38	9	25	26	1.86
49586132--49586225	47	2.0	47	95	0	170	40	17	7	35	1.77
49589360--49589656	148	2.0	148	98	0	576	26	24	17	30	1.97
49596961--49597176	50	4.3	50	81	4	220	29	13	18	38	1.89
49596961--49597176	100	2.2	100	84	4	283	29	13	18	38	1.89
49599613--49599720	43	2.5	43	83	1	137	28	21	17	32	1.96
49601454--49601566	43	2.6	43	83	2	129	25	15	25	33	1.95
49618103--49618273	43	4.0	43	81	6	186	26	15	25	32	1.95
49618106--49618268	86	1.9	85	83	3	211	27	15	25	30	1.96
49620612--49620873	50	5.2	50	70	9	181	25	18	25	30	1.98
49620661--49620835	51	3.5	49	75	13	158	24	18	25	31	1.98
49620604--49620892	101	2.9	101	83	1	373	24	18	25	31	1.98
49621096--49621127	16	2.0	16	93	0	55	46	0	18	34	1.49
49624668--49624706	15	2.6	15	92	8	62	15	17	15	51	1.77
49627698--49628944	51	24.5	51	89	5	1740	26	20	23	29	1.99
49627644--49629051	153	9.3	151	89	2	814	26	20	23	29	1.99
49629255--49629285	16	1.9	16	93	0	53	45	0	19	35	1.51
49632919--49633056	49	2.8	49	84	2	168	26	19	26	28	1.99
49636060--49636124	15	4.4	15	75	22	66	9	13	12	64	1.49
49637776--49637854	40	2.0	40	97	0	149	31	7	29	31	1.85
49638619--49638813	49	4.0	49	84	4	250	26	18	27	27	1.98
49638612--49638807	100	2.0	100	91	3	322	25	18	27	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49643958--49644101	57	2.5	57	79	3	155	31	19	20	29	1.97
49646594--49646813	46	4.7	46	81	7	216	25	19	31	23	1.98
49646594--49646859	92	2.8	95	80	9	271	25	18	31	23	1.98
49646688--49646860	47	3.7	46	80	13	167	26	18	31	23	1.97
49653674--49653715	18	2.4	17	84	11	50	21	11	0	66	1.23
49653683--49653721	18	2.2	18	90	0	60	23	10	0	66	1.22
49653836--49653878	10	4.2	10	82	14	52	67	0	0	32	0.91
49653835--49653913	18	4.4	17	73	17	52	64	0	0	35	0.94
49653839--49653908	10	7.2	10	74	20	51	62	0	0	37	0.95
49653834--49653917	27	3.0	28	81	11	93	63	0	0	36	0.95
49653878--49653917	9	4.2	10	81	12	57	62	0	0	37	0.95
49653878--49653913	19	1.9	18	88	5	54	63	0	0	36	0.94
49653834--49653917	28	3.0	27	81	11	91	63	0	0	36	0.95
49663009--49663197	38	4.9	38	81	6	166	22	21	25	30	1.99
49665062--49665130	5	14.0	5	77	10	63	39	2	1	56	1.23
49682111--49682178	32	2.1	32	94	0	118	33	4	25	36	1.76
49683829--49683947	46	2.6	44	85	7	150	30	18	27	23	1.98
49684012--49684183	49	3.5	49	77	3	161	27	18	28	25	1.98
49686573--49686608	18	1.9	19	94	5	65	11	27	22	38	1.88
49695176--49695202	13	2.1	13	100	0	54	14	37	33	14	1.88
49697111--49697161	16	3.2	16	75	5	50	68	5	0	25	1.12
49697502--49697537	18	2.0	18	100	0	72	27	27	27	16	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49712324--49712393	27	2.6	27	95	2	113	31	28	12	27	1.93
49712324--49712421	28	3.5	28	90	2	135	31	28	13	26	1.94
49717105--49717387	6	45.7	6	66	17	107	48	14	18	19	1.82
49717114--49717207	37	2.5	37	85	0	125	47	11	20	20	1.80
49717105--49717391	19	15.1	18	65	21	70	48	13	18	19	1.81
49717126--49717294	62	2.7	62	81	0	203	49	14	17	18	1.80
49717150--49717244	25	3.9	25	71	8	63	48	15	17	17	1.82
49717224--49717387	25	6.6	25	82	0	175	46	14	18	19	1.83
49717224--49717391	50	3.4	50	88	0	246	47	14	18	19	1.82
49717509--49717616	54	2.0	53	83	1	135	38	20	21	19	1.93
49717509--49717616	27	4.0	27	80	5	112	38	20	21	19	1.93
49718183--49718317	27	5.0	27	82	3	155	25	20	17	36	1.95
49718172--49718280	54	2.0	54	82	3	130	27	22	19	30	1.98
49723700--49723743	22	2.0	22	100	0	88	22	9	27	40	1.84
49727125--49727160	17	2.1	17	100	0	72	33	30	13	22	1.93
49732584--49732649	31	2.1	31	88	0	96	51	19	12	16	1.75
49732887--49732936	21	2.4	21	83	6	57	4	44	20	32	1.70
49733345--49733373	13	2.1	14	93	6	51	55	10	0	34	1.34
49735175--49735247	28	2.6	29	79	14	80	38	31	2	27	1.71
49735214--49735266	21	2.6	21	87	3	72	41	32	0	26	1.56
49736122--49736197	40	1.9	40	86	5	109	30	19	21	28	1.97
49738098--49738187	45	2.0	45	86	2	128	28	12	22	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49740134--49740161	10	2.8	10	100	0	56	71	7	10	10	1.31
49747951--49748000	25	2.0	25	100	0	100	28	28	8	36	1.85
49749622--49749790	20	8.8	20	73	14	115	28	4	11	54	1.57
49749638--49749771	38	3.6	38	77	8	121	28	3	11	55	1.53
49749713--49749840	57	2.2	57	80	10	136	28	9	10	50	1.68
49751046--49751084	5	7.8	5	82	0	51	15	7	0	76	0.99
49751047--49751084	20	1.9	20	88	0	58	15	7	0	76	1.01
49754616--49754737	10	13.3	9	67	17	56	60	3	3	32	1.29
49754614--49754661	18	2.5	20	83	16	66	66	4	0	29	1.10
49754744--49754791	21	2.3	21	82	10	62	54	10	0	35	1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276