Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  272  of  276  ( 33102 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90120962--90121074
27
4.2
26
85
7
145
38
23
23
15
1.92
90120962--90121074
54
2.1
54
88
3
165
38
23
23
15
1.92
90122623--90122647
13
1.9
13
100
0
50
24
8
0
68
1.16
90127061--90127341
40
7.1
40
90
0
393
25
27
21
25
1.99
90127395--90127469
38
2.0
38
86
5
107
25
26
17
30
1.97
90131735--90131805
24
3.0
24
93
0
115
25
38
2
33
1.71
90139118--90139231
31
3.7
31
89
6
180
29
26
14
29
1.95
90139451--90139520
25
2.8
25
88
0
104
25
22
24
27
2.00
90140328--90140405
27
2.9
26
74
14
77
21
19
20
38
1.94
90140423--90140662
27
8.7
27
72
11
119
32
9
19
39
1.83
90140541--90140694
54
2.9
54
80
7
161
30
11
18
38
1.87
90140514--90140662
81
1.8
81
87
5
221
30
8
20
40
1.82
90140512--90140690
81
2.2
81
81
7
213
29
10
20
40
1.85
90140537--90140665
27
4.8
27
80
6
136
31
9
20
38
1.84
90140696--90140892
27
7.3
27
82
3
216
40
9
22
27
1.84
90140696--90140870
54
3.2
54
86
3
262
41
8
22
28
1.83
90140725--90140892
82
2.1
81
87
1
237
40
8
23
27
1.84
90140696--90140892
54
3.6
54
86
2
261
40
9
22
27
1.84
90140678--90140906
109
2.1
108
79
6
275
38
10
20
30
1.86
90145360--90145401
3
14.0
3
84
0
57
35
33
0
30
1.58
90145811--90145957
71
2.1
71
97
0
276
25
21
26
26
1.99
90155693--90155750
30
1.9
30
85
0
80
22
31
25
20
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90156842--90156881
17
2.4
17
100
0
80
37
30
5
27
1.78
90160531--90160556
8
3.2
8
100
0
52
50
0
0
50
1.00
90171465--90172114
326
2.0
325
92
0
1077
42
15
11
30
1.83
90174313--90174350
14
2.7
14
100
0
76
50
13
21
15
1.78
90183373--90183700
178
1.8
177
85
4
455
23
15
14
45
1.84
90185771--90185820
16
3.1
15
85
11
55
54
4
2
40
1.31
90185924--90185986
31
2.0
31
84
6
83
52
3
1
42
1.27
90193104--90193172
35
2.0
34
100
0
129
17
26
23
31
1.96
90198484--90198520
17
2.2
18
90
9
60
32
2
0
64
1.07
90214010--90214050
21
2.0
21
90
0
64
12
4
53
29
1.58
90214064--90214104
3
13.7
3
89
0
64
4
0
60
34
1.18
90216096--90216142
20
2.5
18
83
10
67
74
6
0
19
1.03
90216096--90216142
19
2.5
20
80
19
64
74
6
0
19
1.03
90217436--90217496
31
2.0
31
100
0
122
39
14
16
29
1.88
90223229--90223285
17
3.4
17
68
18
55
33
7
10
49
1.64
90223222--90223286
34
1.9
34
100
0
130
33
6
12
47
1.66
90228206--90228245
16
2.6
15
84
7
53
60
5
0
35
1.19
90236583--90236624
19
2.3
18
84
15
59
23
0
30
45
1.53
90238206--90238307
30
3.4
29
85
6
141
19
5
49
25
1.71
90238214--90238267
18
3.3
18
66
28
57
24
7
46
22
1.77
90238242--90238297
18
3.5
17
68
27
50
19
7
46
26
1.76
90241538--90241574
7
5.3
7
96
0
56
37
5
0
56
1.22
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90251273--90251306
17
2.0
17
88
0
50
64
0
0
35
0.94
90251230--90251348
41
2.8
40
85
11
141
64
0
1
32
1.09
90251305--90251330
11
2.4
11
100
0
52
53
0
7
38
1.30
90252226--90252602
3
126.0
3
65
20
80
29
8
3
58
1.42
90252282--90252360
28
2.6
31
72
7
74
29
8
1
60
1.34
90252310--90252385
20
3.7
20
75
15
66
31
9
1
57
1.38
90252310--90252392
17
4.5
17
75
10
67
31
8
1
59
1.35
90252454--90252511
26
2.3
26
82
8
75
31
3
5
60
1.35
90252611--90252676
26
2.5
26
80
2
69
10
9
3
77
1.10
90252581--90252647
6
11.2
6
80
15
50
20
2
1
74
1.03
90261575--90261657
29
2.8
28
83
9
85
37
1
13
48
1.50
90270299--90270341
21
2.0
21
100
0
86
37
20
18
23
1.94
90270492--90270583
42
2.2
43
82
5
107
28
21
19
30
1.98
90286228--90286545
92
3.3
93
75
14
290
27
19
29
23
1.98
90286230--90286447
48
4.6
50
79
13
226
27
18
31
22
1.97
90298286--90298326
17
2.4
17
84
11
57
53
4
4
36
1.44
90299005--90299035
6
5.3
6
96
3
55
87
0
12
0
0.55
90319840--90319877
16
2.4
16
82
8
51
47
2
0
50
1.15
90319947--90320000
16
3.2
17
79
10
67
53
1
1
42
1.22
90324535--90324574
18
2.2
18
86
8
55
67
12
0
20
1.22
90324658--90324718
29
2.1
30
90
3
97
57
13
3
26
1.51
90331238--90331276
11
3.6
11
82
6
53
84
2
12
0
0.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90331241--90331276
10
3.5
10
85
7
54
86
2
11
0
0.68
90334934--90334980
20
2.3
20
75
7
51
48
4
4
42
1.42
90338789--90338840
25
2.1
25
85
7
70
40
1
0
57
1.10
90349622--90349655
17
2.0
17
88
11
52
29
0
0
70
0.87
90361912--90361954
22
2.0
22
86
8
63
30
0
6
62
1.21
90362896--90362927
16
1.9
17
93
6
57
62
3
25
9
1.40
90371310--90372178
37
23.5
37
99
0
1720
24
21
16
37
1.93
90372142--90372358
52
4.2
52
84
8
284
27
22
14
35
1.93
90372192--90372364
46
3.7
46
84
9
231
28
22
14
34
1.93
90372141--90372364
98
2.3
98
92
0
367
28
22
14
34
1.93
90381865--90382104
129
1.9
129
86
6
351
32
18
17
31
1.94
90381984--90382610
72
8.7
72
81
9
636
33
19
15
31
1.93
90382057--90382606
147
3.8
144
85
7
694
33
19
15
31
1.93
90382328--90382592
75
3.6
75
87
3
410
29
20
16
33
1.94
90382120--90382604
209
2.3
210
81
7
593
33
19
15
31
1.93
90392551--90392987
219
2.0
219
98
0
847
32
16
19
31
1.94
90393452--90393501
26
2.0
26
84
7
68
60
6
6
28
1.44
90394249--90394280
16
2.0
16
93
0
55
12
6
40
40
1.68
90397265--90397326
30
2.1
31
84
6
83
51
3
0
45
1.17
90398755--90398789
6
5.8
6
100
0
70
31
68
0
0
0.90
90399979--90400029
22
2.5
21
84
12
70
64
3
1
29
1.22
90400253--90400315
30
2.1
31
84
3
83
38
1
12
47
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90400575--90400637
30
2.1
31
84
3
83
38
1
12
47
1.51
90400154--90400798
322
2.0
322
99
0
1281
39
8
13
38
1.76
90400856--90400917
18
3.4
17
71
20
54
29
1
4
64
1.23
90402996--90403042
20
2.3
20
88
0
67
29
2
4
63
1.25
90402996--90403033
9
4.0
9
87
12
58
31
2
2
63
1.22
90413422--90413562
27
5.2
27
75
14
130
36
21
21
19
1.95
90413404--90413562
54
3.0
54
83
4
180
35
20
22
20
1.96
90415169--90415276
26
4.2
26
90
4
164
36
22
7
34
1.82
90418072--90418124
22
2.4
21
74
20
54
77
3
7
11
1.10
90419268--90419293
13
2.0
13
100
0
52
46
7
7
38
1.61
90421881--90422052
93
1.8
93
93
0
299
27
28
21
22
1.99
90421873--90422048
46
3.8
46
77
12
189
28
27
21
22
1.99
90423571--90424140
225
2.5
232
77
7
561
29
21
19
30
1.98
90423970--90424091
44
2.7
45
79
1
138
27
26
19
26
1.99
90424113--90424228
44
2.6
44
80
2
135
31
24
17
27
1.97
90429040--90429083
13
3.2
14
81
15
56
59
0
0
40
0.98
90432556--90432589
18
1.9
18
88
5
52
11
29
0
58
1.33
90436317--90436356
20
2.0
20
100
0
80
65
0
25
10
1.24
90436684--90436932
50
4.8
50
85
4
284
20
29
24
26
1.99
90436683--90436932
100
2.4
104
88
6
357
20
29
24
26
1.99
90437027--90437058
13
2.5
13
94
0
55
56
12
0
31
1.37
90437270--90437327
30
1.9
30
85
0
80
31
22
3
43
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90438032--90438126
40
2.3
40
90
3
145
0
28
8
63
1.24
90438144--90438194
3
19.0
3
74
22
51
60
0
0
39
0.97
90438142--90438197
8
6.8
8
77
22
62
60
0
0
39
0.97
90438136--90438197
5
12.2
5
79
20
67
59
0
0
40
0.97
90438147--90438206
13
4.4
13
76
12
57
61
1
0
36
1.06
90438136--90438206
37
1.9
37
83
11
92
60
1
0
38
1.06
90444601--90444661
27
2.3
26
88
8
88
32
9
18
39
1.83
90448433--90448465
3
11.0
3
93
0
57
0
30
0
69
0.88
90448612--90448679
31
2.2
31
86
2
93
22
5
19
52
1.66
90448758--90448791
15
2.3
15
90
10
52
73
0
23
2
0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276