genome.fa.s12.2.7.7.80.10.50.1000.210.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  210  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69745841--69745888	20	2.5	18	83	12	60	81	6	12	0	0.87
69747316--69747361	22	2.1	22	100	0	92	26	17	8	47	1.76
69750656--69750747	28	3.3	28	93	0	166	20	17	31	30	1.96
69750811--69750883	27	2.7	27	73	0	74	41	27	4	27	1.74
69750875--69751071	27	7.3	27	90	0	259	38	18	17	25	1.92
69750870--69751089	81	2.7	81	85	1	298	37	19	17	25	1.93
69751639--69751714	28	2.8	26	82	9	89	21	22	19	36	1.95
69751831--69751893	6	10.3	6	74	16	58	17	19	14	49	1.80
69753909--69753966	30	1.9	31	82	10	75	53	12	20	13	1.72
69762065--69762395	48	6.9	48	78	2	358	27	18	27	26	1.98
69762061--69762395	96	3.5	96	90	3	478	27	18	27	26	1.98
69765652--69765772	44	2.7	43	86	6	145	18	14	31	35	1.91
69768996--69769180	79	2.3	81	84	7	236	24	22	27	25	2.00
69768997--69769180	40	4.6	40	83	9	216	24	22	27	25	2.00
69768997--69769213	79	2.7	79	81	7	201	25	22	27	24	2.00
69776971--69777193	39	5.7	40	85	8	266	25	22	27	24	2.00
69776971--69777193	79	2.8	81	84	9	282	25	22	27	24	2.00
69776971--69777226	79	3.3	79	81	10	217	26	21	27	24	1.99
69780180--69780364	79	2.3	82	84	7	238	25	27	22	24	2.00
69780161--69780364	40	5.1	40	82	8	238	25	27	22	25	2.00
69786816--69786874	28	2.1	29	84	9	77	44	3	22	30	1.69
69813123--69813510	47	8.3	47	88	2	564	28	29	8	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69819392--69819541	67	2.2	67	81	8	171	32	17	28	21	1.96
69819416--69819599	67	2.8	64	77	8	194	29	17	29	22	1.97
69834655--69834780	40	3.2	40	63	20	100	30	21	3	43	1.71
69839464--69839564	53	1.9	53	82	8	125	33	14	7	43	1.75
69839464--69839564	27	3.8	27	85	5	118	33	14	7	43	1.75
69839779--69839828	9	5.0	9	78	21	55	24	22	2	52	1.58
69842597--69842636	21	1.9	21	84	0	53	30	10	25	35	1.88
69843141--69843232	28	3.2	28	92	1	139	29	11	32	26	1.92
69844460--69844495	18	1.9	19	88	5	56	50	8	13	27	1.71
69846088--69846135	15	3.2	15	84	0	69	20	47	6	25	1.73
69848981--69849049	32	2.2	31	84	10	86	55	7	5	31	1.51
69848996--69849059	32	2.0	32	100	0	128	53	9	6	31	1.58
69861952--69861993	15	2.8	15	89	7	59	59	0	7	33	1.25
69863407--69863460	21	2.6	21	85	8	67	40	12	3	42	1.61
69872983--69874430	725	2.0	725	99	0	2842	29	21	16	32	1.95
69879870--69880111	132	1.8	132	96	0	448	27	23	17	31	1.97
69880072--69880207	68	2.0	68	98	0	263	32	14	21	31	1.93
69881356--69881425	27	2.6	27	95	2	113	31	28	12	27	1.93
69881356--69881453	28	3.5	28	90	2	135	31	28	13	26	1.94
69884901--69884984	6	13.7	6	72	14	64	47	15	17	19	1.83
69884901--69884995	31	3.1	31	89	0	127	48	14	17	18	1.81
69885151--69885215	27	2.4	27	82	5	78	33	23	23	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69886410--69886512	37	2.8	37	94	2	172	24	32	20	23	1.98
69886653--69887196	48	11.0	48	89	5	791	31	26	5	36	1.80
69886659--69887196	98	5.4	98	88	4	805	31	26	5	36	1.80
69886653--69887196	146	3.7	144	90	3	791	31	26	5	36	1.80
69886963--69887196	104	2.3	105	86	7	324	31	25	6	36	1.81
69888765--69889014	27	9.3	27	83	5	308	26	22	18	33	1.96
69888765--69889014	54	4.6	54	89	4	344	26	22	18	33	1.96
69888765--69889014	81	3.1	80	87	3	340	26	22	18	33	1.96
69888999--69889231	27	8.6	27	86	0	313	30	9	20	39	1.85
69888764--69889095	54	6.1	54	85	6	338	27	19	18	34	1.96
69888972--69889231	81	3.2	80	83	5	317	30	10	19	38	1.86
69888969--69889231	54	4.9	54	88	1	305	30	11	19	38	1.87
69888969--69889231	27	9.7	27	80	5	264	30	11	19	38	1.87
69896269--69896350	29	2.9	29	88	1	121	35	25	20	18	1.95
69897375--69897418	21	2.1	21	100	0	88	31	27	0	40	1.56
69903720--69903793	29	2.6	29	89	4	105	25	16	32	25	1.96
69905788--69905831	19	2.3	19	92	0	70	15	29	15	38	1.89
69913544--69913575	15	2.2	14	94	5	55	59	12	28	0	1.34
69914012--69914045	4	8.5	4	86	0	50	23	32	0	44	1.54
69916717--69916808	46	2.0	45	97	2	175	29	21	23	23	1.98
69922188--69922242	28	2.0	28	86	10	78	27	32	12	27	1.93
69931624--69931698	29	2.6	29	82	4	98	22	29	20	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69931682--69931742	29	2.1	29	87	3	88	29	26	14	29	1.95
69932780--69932826	22	2.1	23	92	4	78	23	23	2	51	1.59
69938618--69938801	79	2.3	81	82	11	222	25	27	22	25	2.00
69938618--69938801	40	4.6	41	83	12	199	25	27	22	25	2.00
69940597--69940726	67	1.9	67	98	0	251	33	21	14	30	1.93
69944101--69944186	27	3.2	26	80	6	100	38	19	19	22	1.94
69944322--69944510	27	7.0	27	84	3	211	24	20	20	34	1.97
69944322--69944559	81	3.0	79	79	7	196	25	20	19	35	1.96
69944431--69944559	27	4.8	26	72	16	72	26	19	17	36	1.94
69944553--69944758	27	7.6	27	83	1	200	26	9	23	40	1.85
69944553--69944758	81	2.5	81	83	4	247	26	9	23	40	1.85
69947946--69948014	32	2.2	32	81	0	75	47	11	13	27	1.76
69949157--69949204	20	2.5	19	83	10	53	62	2	8	27	1.35
69952330--69952368	16	2.3	16	86	8	51	28	0	2	69	1.02
69954424--69954709	43	6.7	43	78	7	242	25	16	25	32	1.96
69958460--69958500	19	2.2	19	95	0	73	29	4	29	36	1.78
69959691--69959728	19	2.0	20	89	5	60	50	0	23	26	1.50
69959930--69959967	9	4.2	9	86	0	58	31	7	13	47	1.71
69962714--69962740	8	3.4	8	100	0	54	29	11	22	37	1.89
69965959--69966129	93	1.8	93	88	2	263	29	27	21	21	1.98
69965952--69966126	46	3.8	46	74	14	171	30	27	20	22	1.98
69973536--69973984	93	4.8	93	75	12	429	27	29	21	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69973535--69973980	139	3.2	139	97	0	847	27	29	21	21	1.98
69975577--69975611	7	5.0	7	92	0	52	28	8	14	48	1.73
69981539--69981572	12	2.9	12	86	4	52	32	0	0	67	0.91
69981788--69981836	22	2.2	22	81	0	62	61	10	10	18	1.55
69981796--69981835	11	3.6	11	79	0	53	57	10	12	20	1.63
69992386--69992595	46	4.6	45	77	10	167	27	19	29	23	1.98
69993633--69993688	28	2.0	28	96	0	103	17	19	42	19	1.89
69999969--70000078	55	2.0	55	85	7	152	14	30	28	27	1.95
69999974--70000093	55	2.2	55	82	5	145	15	29	27	27	1.96
70010984--70011164	46	4.0	45	79	11	156	28	19	29	22	1.98
70010995--70011213	93	2.4	90	81	9	230	27	19	30	22	1.98
70027518--70027569	26	2.0	26	85	7	70	38	9	32	19	1.84
70027714--70027757	19	2.3	19	84	4	52	34	11	43	11	1.77
70031595--70031634	19	2.1	19	90	0	62	52	5	12	30	1.60
70032144--70032213	24	3.2	24	66	29	75	42	10	7	40	1.66
70032141--70032221	40	2.0	40	100	0	162	41	9	7	40	1.66
70032143--70032207	21	3.2	21	65	30	59	41	10	9	38	1.72
70038470--70038502	13	2.3	15	90	10	52	69	0	3	27	1.03
70038470--70038503	14	2.3	15	90	5	52	70	0	2	26	1.01
70038484--70038523	17	2.4	16	84	12	53	77	0	0	22	0.77
70040578--70040888	153	2.1	152	96	3	583	39	15	22	22	1.91
70041983--70042287	40	7.7	40	90	3	438	24	21	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70047786--70047954	46	3.7	44	80	10	153	26	18	31	23	1.97
70055097--70055214	46	2.6	42	81	13	121	28	21	25	24	1.99
70065228--70065400	47	3.7	47	81	9	210	22	28	18	30	1.97
70065235--70065449	94	2.3	93	85	6	283	23	28	18	29	1.98
70065282--70065449	47	3.6	45	78	15	164	23	29	17	28	1.97
70070681--70070797	31	3.8	31	89	1	173	25	26	15	32	1.95
70071080--70071128	20	2.5	20	96	0	89	32	18	12	36	1.88
70077325--70077579	55	4.8	53	80	9	254	36	16	25	21	1.94
70077332--70077532	108	1.8	110	88	4	309	33	17	25	22	1.96
70081350--70081375	12	2.2	12	100	0	52	7	15	42	34	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276