genome.fa.s12.2.7.7.80.10.50.1000.156.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  156  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50729937--50730483	271	2.0	271	97	0	1031	33	8	31	27	1.86
50735620--50735783	42	3.8	43	75	13	153	30	27	17	24	1.97
50740369--50740517	42	3.5	42	73	14	144	28	23	21	26	1.99
50740368--50740543	86	2.1	83	81	10	187	30	23	19	26	1.98
50747230--50747258	15	2.0	15	93	6	51	10	13	20	55	1.68
50749203--50749272	35	2.0	35	86	5	97	25	17	25	31	1.97
50752039--50752341	40	7.6	40	89	3	389	27	28	20	23	1.99
50761476--50761778	40	7.6	40	87	4	344	26	27	21	25	1.99
50761710--50761787	40	1.9	41	82	10	97	26	28	20	24	1.99
50767429--50767595	43	3.9	42	80	11	178	33	26	16	22	1.96
50767429--50767595	86	2.0	85	83	8	214	33	26	16	22	1.96
50771343--50772228	27	32.8	27	98	0	1682	26	25	10	37	1.88
50772216--50772375	27	5.9	27	80	5	162	44	21	5	28	1.75
50772207--50772374	54	3.1	53	79	10	187	43	22	5	27	1.76
50772221--50772372	81	1.9	81	84	0	196	46	21	5	26	1.74
50772382--50772437	27	2.1	27	86	3	78	35	10	12	41	1.78
50773365--50773434	25	2.8	25	91	0	104	27	24	22	25	2.00
50773390--50773461	25	3.0	24	80	13	76	29	22	22	26	1.99
50773654--50773724	31	2.3	30	88	4	106	33	14	22	29	1.93
50773666--50773736	31	2.3	30	92	2	115	32	15	22	29	1.95
50773748--50773804	29	2.0	28	83	6	71	22	21	24	31	1.98
50773764--50773835	33	2.2	33	84	2	90	22	19	26	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50776062--50776217	27	5.8	27	86	1	215	29	23	8	38	1.84
50776062--50776217	54	2.9	54	90	0	242	29	23	8	38	1.84
50776017--50776363	27	12.9	27	77	5	175	37	22	7	33	1.81
50776210--50776361	81	1.9	81	84	2	198	45	21	5	27	1.74
50776176--50776363	54	3.5	54	78	7	202	42	21	6	29	1.78
50777355--50777430	25	3.1	25	90	1	109	28	21	22	27	1.99
50777380--50777450	25	2.9	24	82	14	83	28	21	22	28	1.99
50777355--50777450	25	3.9	24	86	5	77	27	21	23	27	1.99
50777739--50777793	29	1.9	28	85	3	74	20	23	29	27	1.99
50782177--50782253	37	2.1	37	97	0	145	37	19	3	38	1.70
50792129--50792212	23	3.7	23	79	7	82	26	21	17	34	1.96
50797497--50797771	141	2.0	140	96	0	505	42	6	12	38	1.68
50804695--50804850	43	3.6	42	73	12	113	32	26	17	24	1.97
50810758--50810811	27	2.0	28	85	3	74	25	27	3	42	1.72
50829715--50829793	28	2.8	28	96	0	149	29	26	11	32	1.91
50837839--50837947	42	2.6	42	82	1	128	33	25	15	25	1.95
50837838--50837989	43	3.5	43	78	5	146	32	25	16	25	1.96
50840109--50840141	13	2.6	13	90	4	50	39	0	12	48	1.40
50844564--50844611	6	8.8	5	90	4	51	16	2	0	81	0.79
50844574--50844611	6	6.5	6	96	3	69	15	0	0	84	0.63
50853060--50853138	37	2.1	37	88	4	115	24	30	20	25	1.98
50853315--50854309	47	21.2	47	99	0	1891	28	29	10	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50879707--50879742	17	2.1	17	94	0	63	36	13	11	38	1.81
50885068--50885102	18	2.0	17	88	5	52	48	17	0	34	1.47
50885491--50885603	43	2.6	43	72	10	113	29	29	19	22	1.98
50889277--50889402	63	2.0	63	98	0	243	42	7	19	30	1.80
50899211--50899264	28	1.9	28	85	7	74	37	7	5	50	1.54
50902238--50902374	23	5.8	23	77	12	109	34	20	22	22	1.97
50902254--50902349	47	2.1	46	86	7	133	35	22	21	19	1.96
50929262--50929413	75	2.0	75	96	0	277	36	27	11	25	1.90
50932593--50932668	38	2.0	38	100	0	152	23	21	13	42	1.88
50934584--50934685	51	2.0	51	98	0	195	18	21	10	49	1.78
50934597--50934680	27	3.2	27	65	27	72	15	25	10	48	1.77
50939577--50939627	24	2.1	24	100	0	102	33	19	7	39	1.81
50947315--50947416	40	2.5	40	83	1	123	32	27	13	26	1.94
50949742--50949848	56	1.9	56	84	7	146	28	16	25	29	1.97
50952236--50952261	13	2.0	13	100	0	52	15	30	30	23	1.95
50954393--50954429	17	2.1	18	95	5	67	16	35	35	13	1.88
50956240--50956299	27	2.3	27	82	8	79	25	20	18	36	1.94
50957178--50957332	79	2.0	79	85	5	215	27	19	21	31	1.97
50960592--50960714	25	4.9	25	79	7	97	33	21	20	24	1.97
50960652--50960714	25	2.5	25	89	0	99	33	22	20	23	1.97
50963871--50963994	47	2.5	47	80	14	135	21	16	25	36	1.94
50966956--50967062	34	3.2	34	82	4	137	28	22	23	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50976323--50976371	22	2.2	22	85	7	64	10	0	42	46	1.37
50977024--50977055	16	2.1	15	94	5	55	25	18	0	56	1.42
50978280--50978382	52	2.0	51	84	1	134	35	12	22	29	1.91
50978917--50978965	23	2.1	23	92	0	80	38	26	0	34	1.57
50980888--50980986	33	3.0	33	80	5	119	26	27	21	25	1.99
50981173--50981255	27	3.2	26	72	6	78	37	19	20	22	1.94
50981391--50981480	27	3.3	27	81	3	101	26	20	17	35	1.95
50981475--50981594	27	4.4	27	78	6	91	31	10	18	40	1.84
50981475--50981592	54	2.2	54	79	0	128	32	9	18	39	1.83
50985517--50985612	33	2.9	33	81	3	113	29	25	20	25	1.99
50985579--50985639	28	2.2	28	85	2	79	31	21	22	24	1.98
50985523--50985649	32	4.0	33	76	12	122	27	24	22	25	2.00
50985780--50985880	27	3.8	27	80	5	98	36	17	21	23	1.95
50985994--50986096	27	3.8	26	78	7	80	30	12	21	35	1.90
50986049--50986199	27	5.6	27	73	13	114	33	11	17	37	1.85
50986049--50986199	54	2.8	54	73	9	155	33	11	17	37	1.85
50988487--50988656	43	4.0	43	72	11	143	31	25	13	28	1.94
50991631--50991815	79	2.3	81	81	9	220	25	26	22	25	2.00
50991631--50991815	40	4.7	40	78	12	202	25	26	22	25	2.00
50992413--50992529	59	2.0	59	96	0	216	35	25	9	29	1.88
50994171--50994244	29	2.6	29	86	4	96	27	16	31	25	1.96
50996401--50996439	20	2.0	20	94	0	69	33	15	20	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50996491--50996563	23	3.1	23	90	3	119	27	20	21	30	1.98
50996490--50996570	24	3.4	24	89	5	128	28	19	23	28	1.98
50996778--50996837	31	1.9	31	86	0	84	38	15	21	25	1.92
50999570--50999711	40	3.6	40	91	2	216	26	26	22	24	2.00
51003281--51003363	31	2.7	31	92	3	143	27	27	16	27	1.97
51006058--51006551	49	10.3	49	90	3	774	32	8	29	29	1.87
51006037--51006551	96	5.4	95	94	1	768	32	8	29	29	1.87
51006058--51006551	145	3.4	145	90	2	784	32	8	29	29	1.87
51006670--51006748	37	2.1	37	90	0	122	24	18	31	25	1.98
51007549--51007683	26	5.3	26	84	4	163	27	23	20	28	1.99
51007549--51007682	52	2.7	50	89	6	193	27	23	20	27	1.99
51007736--51007819	20	4.2	20	92	3	134	30	17	10	40	1.84
51008173--51008211	21	1.9	21	89	5	62	23	35	20	20	1.96
51008527--51008591	27	2.4	27	82	5	78	24	24	15	35	1.94
51008622--51009008	27	14.3	27	75	6	165	32	9	20	36	1.86
51008878--51009008	28	4.8	26	79	10	120	32	9	20	38	1.84
51008878--51009008	55	2.4	54	79	6	147	32	9	20	38	1.84
51008995--51009080	27	3.2	27	79	0	91	33	10	26	29	1.90
51010804--51010842	12	3.2	12	85	0	51	30	10	41	17	1.83
51012715--51012754	21	2.0	20	85	5	53	42	0	17	40	1.49
51018251--51019091	79	10.6	79	98	0	1596	25	28	21	24	1.99
51024651--51024916	39	6.8	39	90	0	397	23	25	27	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51028125--51028179	24	2.3	24	87	3	76	32	23	25	18	1.97
51028190--51028240	24	2.1	23	82	7	57	43	19	23	13	1.87
51040370--51040442	38	1.9	38	100	0	146	30	13	23	32	1.93
51041047--51041191	40	3.6	40	85	4	193	25	24	26	23	2.00
51049572--51049751	39	4.6	38	78	8	125	29	27	20	22	1.98
51049572--51049767	78	2.5	77	78	8	175	29	27	19	22	1.98
51049654--51049761	39	2.8	39	94	0	180	25	30	21	23	1.99
51050091--51050154	32	2.0	32	96	0	119	29	15	29	25	1.96
51054793--51054830	20	1.9	20	88	0	58	39	2	13	44	1.57
51057215--51057277	31	2.0	31	100	0	126	42	0	15	41	1.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276