genome.fa.s12.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  134  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43392250--43392310	30	2.0	30	87	0	86	39	6	22	31	1.80
43393045--43393228	67	2.8	64	76	8	185	29	16	30	23	1.96
43396983--43397030	7	6.9	7	92	0	60	20	47	2	29	1.61
43403781--43404044	39	6.8	39	86	0	287	17	17	29	35	1.93
43403780--43404055	117	2.4	116	82	3	320	17	17	30	35	1.93
43407754--43407812	26	2.3	26	100	0	118	27	6	32	33	1.83
43413726--43413987	39	6.7	40	88	7	337	24	27	22	25	2.00
43428581--43428640	29	2.1	29	93	0	102	11	30	36	21	1.89
43432688--43432801	48	2.3	49	83	7	135	21	17	32	28	1.96
43436695--43436867	46	3.7	46	80	11	219	22	20	27	29	1.99
43436692--43436862	93	1.8	93	94	2	308	22	21	28	28	1.99
43437877--43437981	53	2.0	53	98	0	201	38	19	22	20	1.94
43441725--43441811	44	2.0	44	93	0	147	28	10	20	40	1.85
43444378--43444583	46	4.5	46	79	10	224	22	20	28	27	1.99
43444375--43444544	92	1.8	93	92	1	288	22	21	28	27	1.99
43446042--43446214	46	3.7	46	77	14	176	24	21	25	28	1.99
43446039--43446209	93	1.8	93	89	2	272	23	21	26	28	1.99
43447600--43447854	55	4.8	53	78	9	254	36	16	24	21	1.94
43447607--43447807	108	1.8	110	87	4	300	35	17	24	22	1.95
43447923--43447967	23	1.9	24	86	4	65	40	11	26	22	1.87
43448046--43448076	16	1.9	16	93	0	53	41	0	22	35	1.54
43457498--43457714	46	4.7	46	91	1	310	39	15	24	21	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43457449--43457714	138	2.0	130	85	7	354	38	15	24	21	1.92
43457975--43458021	25	2.0	25	83	8	62	53	4	14	27	1.60
43459449--43459564	42	2.8	42	80	2	108	28	25	17	28	1.97
43466689--43466963	138	2.0	138	99	0	541	36	13	9	41	1.76
43473440--43473647	80	2.6	80	89	2	303	23	22	28	25	1.99
43473436--43473647	40	5.3	40	80	6	234	23	21	28	26	1.99
43479153--43479857	40	17.6	40	100	0	1410	24	22	27	24	2.00
43486476--43486525	24	2.0	25	81	11	59	10	32	2	56	1.44
43495178--43495220	6	7.2	6	79	10	52	30	6	0	62	1.21
43496651--43496690	19	2.1	19	86	9	55	30	12	7	50	1.68
43500804--43500847	23	1.9	23	90	0	70	15	0	29	54	1.42
43500961--43501050	19	4.8	19	82	10	114	37	1	18	42	1.58
43500961--43501050	39	2.5	35	83	7	108	37	1	18	42	1.58
43501584--43501838	126	2.0	126	90	0	402	36	18	18	27	1.94
43504916--43504950	17	2.1	17	94	0	61	42	8	28	20	1.81
43506532--43506666	49	2.8	46	81	9	146	50	5	9	34	1.59
43506800--43506886	11	7.9	11	78	5	77	41	1	18	39	1.58
43508407--43508472	30	2.2	32	81	8	84	34	1	4	59	1.27
43515280--43515321	8	5.1	8	82	11	50	50	0	2	47	1.14
43516229--43516326	30	2.9	35	73	17	107	29	27	16	26	1.97
43516261--43516347	30	2.9	30	91	0	129	27	27	19	25	1.99
43519902--43519931	6	4.8	6	95	4	51	30	0	0	70	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43520026--43520105	35	2.3	35	86	4	108	21	21	18	38	1.93
43520040--43520126	35	2.5	35	77	7	95	21	26	13	37	1.91
43521633--43521682	19	2.7	18	84	9	64	24	4	2	70	1.15
43521576--43521682	28	3.8	27	74	16	76	28	3	1	66	1.19
43529023--43529057	3	11.7	3	100	0	70	34	0	0	65	0.93
43529875--43530307	116	3.8	116	77	8	449	15	17	17	48	1.81
43530039--43530305	110	2.4	114	80	9	282	16	16	17	48	1.81
43529900--43530307	226	1.8	225	81	3	507	16	17	17	48	1.81
43536226--43536269	21	2.2	20	83	4	52	15	15	22	45	1.85
43539627--43539668	21	2.0	21	95	0	75	21	16	14	47	1.82
43539920--43540007	25	3.6	24	76	10	72	20	22	21	35	1.96
43546343--43546377	13	2.6	14	86	4	54	71	0	8	20	1.11
43550853--43550949	35	2.8	35	88	1	151	38	24	11	25	1.89
43552462--43552496	16	2.2	16	94	0	61	25	25	5	42	1.77
43555508--43555551	21	2.1	21	100	0	88	31	18	9	40	1.81
43562290--43562347	24	2.4	24	97	0	107	60	0	29	10	1.30
43568369--43568427	25	2.3	26	74	8	68	33	22	11	32	1.90
43570488--43570632	40	3.6	40	85	4	193	23	26	24	25	2.00
43571821--43571896	38	2.0	38	97	0	143	31	23	14	30	1.94
43578543--43578675	40	3.3	40	93	2	223	27	27	21	23	1.99
43584046--43584213	40	4.2	40	83	4	106	25	27	23	23	2.00
43584069--43584213	40	3.6	40	85	4	193	23	26	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43589115--43589253	52	2.6	53	85	2	190	26	23	14	35	1.93
43594183--43594471	41	7.0	41	81	3	262	37	26	17	17	1.92
43594264--43594471	83	2.5	82	86	1	290	38	27	15	17	1.91
43596852--43597010	43	3.7	42	77	9	133	31	25	18	25	1.97
43598223--43598264	21	2.0	21	95	0	75	26	23	26	23	2.00
43600290--43600320	15	2.1	15	100	0	62	25	12	19	41	1.87
43602991--43603036	5	9.2	5	100	0	92	60	0	0	39	0.97
43605793--43606037	117	2.1	119	87	3	361	24	22	28	25	1.99
43606644--43606699	20	2.6	22	72	13	53	30	8	7	53	1.59
43618156--43618213	28	2.2	28	82	11	70	62	1	6	29	1.31
43622462--43622500	14	2.8	14	96	0	69	58	10	7	23	1.56
43625715--43625777	29	2.1	29	80	13	67	42	9	3	44	1.52
43627733--43627854	50	2.5	49	82	5	142	28	21	13	36	1.92
43649519--43649549	6	5.2	6	100	0	62	0	0	51	48	1.00
43651759--43651810	26	2.0	26	96	0	95	7	34	21	36	1.82
43653421--43653448	14	2.0	14	100	0	56	42	14	7	35	1.73
43653744--43653781	15	2.4	17	91	8	62	63	0	0	36	0.95
43654126--43654186	21	2.9	21	73	11	61	32	1	4	60	1.28
43656464--43656525	25	2.5	25	81	0	79	45	19	17	17	1.86
43657962--43658023	18	3.3	19	74	12	56	30	1	1	66	1.11
43657956--43657995	18	2.2	18	86	4	53	32	0	0	67	0.91
43658029--43658072	21	2.0	21	82	4	52	29	4	2	63	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43668400--43668537	38	3.6	38	84	5	170	32	26	21	19	1.97
43668468--43668552	38	2.5	33	83	11	100	32	28	18	20	1.96
43671890--43671965	9	8.4	9	88	0	107	43	23	9	23	1.82
43672937--43673258	40	8.1	40	82	5	346	44	26	16	13	1.84
43672937--43673258	80	4.0	80	83	3	407	44	26	16	13	1.84
43672937--43673249	120	2.6	119	83	4	387	44	25	16	13	1.84
43688361--43688399	19	2.1	19	100	0	78	38	15	30	15	1.88
43688695--43688865	79	2.2	79	83	6	204	26	19	26	26	1.99
43688648--43688832	40	4.7	40	80	6	207	24	21	27	26	1.99
43699092--43699148	22	2.6	22	91	0	96	22	7	17	52	1.68
43700817--43700878	32	1.9	33	90	3	99	45	1	14	38	1.55
43702274--43702303	12	2.5	12	94	0	51	13	23	3	60	1.48
43706033--43706389	178	2.0	178	100	0	714	32	23	11	32	1.91
43710089--43710201	43	2.7	43	80	6	149	23	18	25	31	1.97
43710956--43711000	24	1.9	23	82	13	56	31	4	24	40	1.75
43714849--43714899	25	2.0	25	100	0	102	27	7	7	56	1.55
43716118--43716155	17	2.4	16	86	8	51	31	26	28	13	1.93
43718222--43718398	27	6.5	26	83	6	158	25	15	29	28	1.96
43718222--43718377	82	1.9	81	85	3	215	26	16	29	28	1.96
43718218--43718398	82	2.2	81	81	2	211	26	16	28	28	1.97
43719108--43719199	46	2.0	46	93	0	157	36	18	23	20	1.94
43730835--43730861	14	1.9	14	100	0	54	44	0	25	29	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43732305--43732403	38	2.6	37	85	6	135	23	20	23	33	1.97
43734636--43734741	53	2.0	53	94	0	185	30	19	13	36	1.90
43734781--43734968	41	4.6	41	87	2	281	28	28	22	20	1.98
43734781--43734968	81	2.3	82	88	2	281	28	28	22	20	1.98
43736192--43736335	72	2.0	72	98	0	279	21	20	6	51	1.69
43743130--43743279	41	3.7	41	84	3	214	28	27	23	21	1.99
43749903--43749967	27	2.4	27	84	0	85	27	18	16	36	1.93
43749946--43750230	27	10.7	27	78	10	284	32	9	19	38	1.84
43749946--43750203	53	4.8	53	84	4	333	31	10	20	37	1.86
43749946--43750231	80	3.6	80	84	6	357	32	10	19	38	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276