genome.fa.s12.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  148  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48202144--48202302	27	5.9	27	77	10	155	34	22	23	19	1.96
48202156--48202302	54	2.7	55	83	5	192	34	23	23	18	1.96
48210790--48210901	40	2.8	40	81	5	145	29	28	20	21	1.98
48218732--48218863	40	3.3	40	79	7	144	28	26	21	24	1.99
48226246--48226284	19	2.0	20	85	5	53	33	33	15	17	1.92
48229264--48229309	20	2.3	21	82	14	62	26	17	28	28	1.98
48242586--48242629	22	2.0	22	86	0	61	43	0	4	52	1.22
48251098--48251139	19	2.1	21	91	8	70	38	0	14	47	1.44
48263755--48263815	18	3.2	18	73	13	59	21	34	8	36	1.83
48263757--48263809	18	2.7	21	74	17	67	18	37	3	39	1.69
48273243--48273405	40	4.1	40	79	3	175	14	28	17	39	1.89
48273243--48273498	20	12.8	20	66	11	80	14	28	17	39	1.89
48273243--48273413	80	2.1	80	81	4	193	14	28	17	39	1.89
48273363--48273505	60	2.4	60	85	1	187	15	28	17	38	1.90
48274777--48274802	13	2.0	13	100	0	52	46	0	7	46	1.31
48279963--48280045	5	16.0	5	77	19	82	16	4	1	77	1.01
48279965--48280033	25	2.7	25	88	6	95	15	4	1	78	0.98
48279963--48280023	30	2.0	31	93	3	106	18	3	0	78	0.88
48281262--48281324	30	2.1	30	100	0	126	33	6	23	36	1.80
48283755--48283794	20	2.1	19	85	4	53	45	12	7	35	1.70
48286205--48286357	43	3.6	42	77	11	161	32	27	17	22	1.96
48287366--48287390	13	1.9	13	100	0	50	40	24	4	32	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48291161--48291260	45	2.2	45	94	0	173	35	29	15	21	1.93
48294629--48294672	23	1.9	23	95	0	79	25	27	18	29	1.98
48295251--48295281	15	2.1	15	93	0	53	54	22	3	19	1.58
48295796--48295824	14	2.0	15	93	6	51	51	20	0	27	1.47
48298400--48298445	23	2.0	23	91	0	74	32	19	15	32	1.93
48306308--48306529	45	5.0	44	83	4	234	33	26	16	23	1.95
48306308--48306529	89	2.5	88	82	2	241	33	26	16	23	1.95
48307077--48307107	15	2.1	15	93	0	53	54	25	0	19	1.44
48307621--48307649	14	2.0	15	93	6	51	51	20	0	27	1.47
48308347--48308413	33	2.0	33	97	0	125	41	11	13	32	1.81
48313356--48313380	13	1.9	13	100	0	50	40	24	4	32	1.73
48318428--48318542	54	2.2	53	90	3	178	46	7	5	40	1.55
48319521--48319721	101	2.0	100	99	0	393	33	17	10	37	1.85
48319727--48319805	37	2.1	37	90	0	122	25	31	18	24	1.98
48319923--48320449	47	11.2	47	96	0	946	29	30	8	31	1.87
48331771--48332034	132	2.0	132	98	0	510	40	10	17	31	1.83
48332723--48332910	40	4.7	40	95	0	313	30	20	26	22	1.98
48338564--48338963	200	2.0	200	93	1	678	34	15	25	24	1.95
48338977--48339115	70	2.0	70	97	0	260	19	22	23	35	1.96
48339226--48339349	62	2.0	62	96	0	230	32	14	32	20	1.93
48341292--48341475	40	4.6	41	81	12	208	25	22	27	25	2.00
48341292--48341475	79	2.3	81	82	11	222	25	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48341344--48341508	79	2.1	79	82	8	194	26	21	27	24	1.99
48346090--48346254	47	3.5	47	77	14	205	29	26	19	24	1.98
48346043--48346307	93	2.8	93	95	0	467	28	27	20	23	1.99
48346036--48346304	46	5.8	46	74	14	248	29	27	20	23	1.98
48361965--48362101	69	2.0	69	91	0	220	42	11	12	33	1.79
48365805--48366066	33	7.8	32	69	14	118	31	14	24	29	1.95
48366007--48366084	33	2.4	32	82	6	93	34	16	21	26	1.95
48365803--48366132	101	3.3	101	87	1	450	32	15	24	27	1.95
48381923--48382045	43	2.9	42	69	11	106	24	18	24	32	1.97
48383207--48383277	35	2.0	35	100	0	142	32	11	14	42	1.81
48383210--48383287	35	2.5	30	85	12	95	32	10	14	43	1.78
48391452--48391490	19	2.0	20	85	5	53	28	2	20	48	1.62
48398241--48398383	39	3.7	39	76	3	162	33	5	16	44	1.70
48398238--48398422	78	2.4	78	96	0	334	33	7	16	42	1.75
48398298--48398427	39	3.3	39	75	4	154	33	9	14	42	1.78
48398529--48398681	78	2.0	78	82	2	191	33	4	17	44	1.69
48398131--48398681	291	1.9	291	95	0	987	33	7	15	43	1.75
48398528--48398707	39	4.6	39	78	2	173	34	5	17	43	1.71
48403000--48403113	27	4.2	26	85	8	138	17	23	21	36	1.94
48403000--48403113	55	2.1	54	86	4	158	17	23	21	36	1.94
48409233--48409358	62	2.0	62	100	0	252	27	15	38	17	1.90
48410461--48410503	16	2.7	16	88	0	59	46	18	23	11	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48410925--48411035	27	4.1	26	79	9	96	18	20	20	39	1.92
48413482--48413590	28	3.9	28	79	7	96	27	13	31	27	1.94
48413477--48413587	56	2.0	57	80	5	127	28	13	30	27	1.94
48416205--48416382	52	3.5	52	82	8	208	28	28	15	28	1.96
48416206--48416382	51	3.5	49	78	9	185	28	28	14	28	1.95
48421999--48422036	17	2.2	17	95	0	67	57	7	15	18	1.62
48425335--48425381	20	2.3	20	85	0	58	48	4	12	34	1.61
48430343--48431061	241	3.0	240	94	0	1228	30	12	25	32	1.92
48435538--48435660	27	4.6	27	77	8	97	24	19	19	36	1.95
48437879--48438056	45	4.0	45	90	2	270	23	21	27	27	1.99
48440000--48440035	18	2.0	18	88	0	54	25	19	19	36	1.95
48442849--48442951	52	2.0	52	98	0	197	30	27	11	31	1.92
48443032--48443108	29	2.7	28	80	6	100	33	25	11	28	1.91
48443327--48443365	16	2.4	16	95	0	69	7	17	20	53	1.68
48446707--48446783	27	2.9	27	90	0	118	24	15	18	41	1.89
48446683--48446800	54	2.2	54	81	4	132	30	15	16	37	1.90
48446706--48446815	54	2.0	54	85	3	150	24	15	18	41	1.89
48446705--48446804	27	3.7	27	81	4	112	26	13	18	43	1.86
48448491--48448516	13	2.0	13	100	0	52	7	15	30	46	1.74
48449227--48449631	39	10.4	39	80	7	457	33	4	19	42	1.71
48449592--48449624	15	2.1	17	88	11	52	30	3	21	45	1.67
48449227--48449609	78	4.9	78	93	1	617	33	3	19	43	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48451300--48451520	85	2.6	85	99	0	433	37	9	26	26	1.86
48453556--48453684	47	2.7	47	85	0	177	31	8	32	27	1.87
48453803--48453881	37	2.1	37	88	0	113	24	17	31	26	1.97
48456250--48456518	46	5.8	45	72	9	211	24	20	26	28	1.99
48456247--48456510	93	2.8	93	95	1	458	24	20	26	28	1.99
48456296--48456464	47	3.6	47	74	7	182	24	20	27	28	1.99
48458615--48458717	37	2.8	37	90	0	170	26	32	18	23	1.97
48458858--48459147	48	6.0	48	92	0	481	31	26	6	36	1.81
48460930--48461088	80	2.0	80	98	0	309	32	23	8	34	1.86
48464959--48465018	30	2.0	30	90	0	93	38	15	16	30	1.89
48467898--48467977	40	2.0	40	97	0	151	38	17	8	35	1.81
48468295--48468334	14	2.6	16	85	14	57	37	15	0	47	1.45
48470066--48470095	15	2.0	15	100	0	60	53	26	0	20	1.46
48473344--48473515	93	1.8	93	92	0	290	29	27	20	22	1.99
48473337--48473512	46	3.8	46	75	12	180	30	27	20	21	1.98
48480094--48480145	17	2.8	18	82	8	61	11	28	42	17	1.84
48480373--48480457	27	3.1	27	74	0	80	37	17	17	27	1.92
48483707--48483855	39	3.8	39	81	3	183	28	6	21	42	1.78
48483734--48483883	78	1.9	78	86	0	210	29	7	20	43	1.78
48486077--48486156	37	2.2	37	78	13	85	18	28	7	45	1.77
48488080--48488247	46	3.6	46	77	9	162	29	19	27	23	1.98
48488119--48488296	94	1.9	94	83	5	234	26	20	29	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48489126--48489157	16	2.0	16	100	0	64	37	31	25	6	1.81
48493221--48493260	20	2.0	20	100	0	80	50	10	30	10	1.69
48497281--48497320	21	2.0	21	90	5	64	10	37	30	22	1.87
48505119--48505157	14	2.8	14	88	0	60	38	17	2	41	1.64
48511836--48511887	24	2.2	24	92	0	86	51	7	3	36	1.49
48514294--48514372	38	2.1	38	97	0	149	29	17	25	27	1.98
48515697--48515846	43	3.5	43	79	8	162	32	24	15	28	1.95
48522938--48522962	12	2.1	12	100	0	50	36	16	8	40	1.77
48523072--48523260	50	3.7	50	82	2	153	24	15	26	32	1.96
48523128--48523353	50	4.5	50	82	5	197	24	15	29	30	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276