genome.fa.s12.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  98  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30904113--30904213	50	2.0	50	86	3	141	29	26	12	30	1.93
30916171--30916200	12	2.5	12	100	0	60	6	23	43	26	1.78
30921472--30921533	29	2.1	30	88	8	92	25	3	11	59	1.46
30926442--30926495	27	2.0	27	100	0	108	25	11	11	51	1.70
30927410--30927489	38	2.1	36	80	13	90	61	7	3	27	1.40
30928201--30928254	22	2.5	23	79	11	69	33	1	5	59	1.31
30929207--30929261	21	2.6	21	77	11	67	60	5	1	32	1.30
30930078--30930127	24	2.2	22	82	13	57	66	8	0	26	1.19
30932100--30932381	47	5.8	47	72	18	168	26	18	29	25	1.98
30932206--30932233	11	2.5	11	100	0	56	21	10	35	32	1.88
30938310--30938360	20	2.7	19	82	14	61	37	19	0	43	1.51
30941434--30941648	41	5.1	41	68	12	159	27	19	28	24	1.98
30941370--30941679	84	3.7	84	97	0	566	28	18	27	25	1.98
30941374--30941674	42	7.1	43	67	14	214	28	18	27	25	1.98
30946214--30946365	42	3.6	42	75	7	157	28	25	15	30	1.95
30949030--30949287	23	10.7	23	73	14	189	29	25	20	23	1.99
30949071--30949276	76	2.7	76	85	3	256	29	26	20	23	1.99
30949147--30949287	52	2.9	45	85	13	201	31	26	19	23	1.98
30949171--30949276	52	2.0	52	98	0	203	32	28	16	22	1.96
30949171--30949254	29	3.1	29	70	19	99	33	28	16	21	1.95
30949752--30949808	29	2.0	29	85	0	78	33	22	3	40	1.71
30953621--30953843	46	4.7	47	76	13	185	28	17	29	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30959849--30959890	20	2.1	20	95	0	75	16	45	19	19	1.86
30969521--30969711	55	3.5	54	75	2	132	36	20	24	18	1.95
30969515--30969721	53	3.8	54	76	1	209	36	18	25	19	1.95
30979872--30980104	49	4.7	50	85	3	292	27	18	26	28	1.98
30979977--30980060	28	3.2	28	64	25	74	25	16	28	29	1.97
30979879--30980104	101	2.3	98	88	2	317	26	18	26	28	1.98
30984571--30984889	48	6.6	48	76	8	299	29	18	28	24	1.98
30984568--30984890	96	3.4	95	81	7	345	28	18	28	23	1.98
30984558--30984891	144	2.3	141	84	4	418	28	18	28	24	1.98
30990988--30991250	40	6.6	40	88	3	325	24	20	27	26	1.99
30991027--30991285	80	3.3	80	85	3	256	25	20	27	25	1.99
30998938--30999200	40	6.6	40	88	3	325	24	20	27	26	1.99
30998977--30999235	80	3.3	80	85	3	256	25	20	27	25	1.99
31001726--31001772	18	2.6	18	86	6	60	25	25	10	38	1.88
31003883--31003937	29	2.0	27	86	13	76	34	50	0	14	1.43
31005184--31005275	28	3.2	28	81	7	114	25	32	14	28	1.94
31005489--31005523	16	2.2	16	89	0	52	11	22	17	48	1.79
31011240--31011362	55	2.2	56	86	2	167	26	12	27	33	1.92
31011240--31011362	28	4.4	28	89	2	167	26	12	27	33	1.92
31011267--31011375	28	4.0	27	89	3	94	29	11	24	33	1.91
31016824--31017156	47	7.1	47	96	0	585	31	9	30	28	1.88
31017275--31017353	37	2.1	37	90	0	122	24	18	31	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31019259--31019332	29	2.6	29	89	4	105	25	16	32	25	1.96
31019643--31019838	40	4.9	40	81	5	184	26	22	26	23	2.00
31019643--31019839	80	2.5	81	80	7	206	26	23	26	23	2.00
31020928--31021328	200	2.0	200	99	0	784	32	12	22	32	1.92
31022458--31022557	49	2.0	49	98	0	191	24	19	24	33	1.97
31033220--31033323	29	3.6	29	96	0	181	30	28	13	26	1.94
31048404--31048569	40	4.2	40	88	0	251	28	27	20	24	1.99
31052551--31052642	29	3.2	29	96	0	175	29	31	14	25	1.94
31056311--31056387	19	3.9	19	79	11	84	32	2	16	48	1.61
31068994--31069102	56	2.0	56	90	1	175	22	29	18	30	1.97
31069049--31069205	68	2.4	64	78	9	156	26	29	15	28	1.96
31069413--31069449	18	2.1	18	100	0	74	51	16	0	32	1.45
31073081--31073134	27	2.0	27	85	0	72	38	7	14	38	1.75
31073388--31073612	49	4.5	50	79	2	229	27	17	24	30	1.97
31075841--31075888	16	3.0	16	87	0	69	43	12	25	18	1.85
31076070--31076149	29	2.8	28	85	7	108	23	15	33	27	1.94
31079223--31079252	12	2.5	12	94	0	51	30	36	26	6	1.82
31082371--31082420	25	2.0	25	100	0	100	44	12	8	36	1.71
31092097--31092299	53	3.8	53	75	3	145	38	18	21	21	1.93
31093805--31094021	45	5.0	44	70	9	149	22	14	30	32	1.94
31095198--31095406	47	4.5	46	80	7	183	27	19	30	22	1.98
31100997--31101055	29	2.0	29	100	0	82	28	3	13	54	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31107692--31107730	19	2.1	19	100	0	78	64	10	15	10	1.50
31119799--31120012	46	4.6	45	77	9	191	23	28	18	28	1.98
31119799--31120010	94	2.3	92	84	7	261	24	29	18	27	1.98
31121584--31121636	27	2.0	27	85	7	72	37	3	0	58	1.16
31122582--31122727	23	6.4	22	74	9	105	21	14	22	41	1.89
31122579--31122718	69	2.0	68	80	5	156	20	15	24	40	1.91
31141488--31141553	27	2.5	26	85	7	87	37	22	22	16	1.93
31141488--31141561	27	2.8	27	78	13	82	36	21	24	17	1.95
31141512--31141569	27	2.1	27	84	6	73	36	27	20	15	1.93
31161457--31161496	21	2.0	21	85	5	55	22	27	37	12	1.90
31162569--31162628	30	2.0	30	100	0	120	23	20	10	46	1.80
31162746--31162874	49	2.6	50	83	3	163	28	28	16	26	1.97
31162747--31162966	48	4.6	47	79	10	186	27	30	16	26	1.97
31162795--31163021	48	4.8	44	74	16	149	24	30	17	27	1.97
31166563--31166625	20	3.0	20	74	17	65	9	23	23	42	1.83
31169617--31169985	109	3.4	109	85	2	481	23	18	25	31	1.98
31172321--31172357	19	1.9	19	100	0	74	32	8	16	43	1.77
31175649--31175777	45	2.9	45	90	0	195	36	22	20	20	1.95
31178013--31178199	49	3.8	49	84	1	257	31	27	16	25	1.96
31178029--31178207	99	1.8	99	96	0	331	30	29	16	24	1.96
31179256--31179290	17	2.0	18	88	5	54	11	42	34	11	1.77
31180742--31180799	30	2.0	30	83	10	75	46	22	0	31	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31183702--31183761	30	2.0	30	86	0	84	40	8	25	26	1.84
31185228--31185405	27	6.6	27	83	3	178	29	28	15	26	1.96
31185254--31185404	82	1.9	81	88	4	232	28	27	16	27	1.97
31193289--31193466	27	6.6	27	83	3	178	29	28	15	26	1.96
31193315--31193465	82	1.9	81	88	4	232	28	27	16	27	1.97
31197023--31197104	23	3.6	22	78	15	87	34	18	24	23	1.96
31202997--31203303	40	7.6	40	86	4	400	23	23	27	25	2.00
31203001--31203303	83	3.7	83	92	3	465	23	23	27	25	2.00
31202997--31203278	123	2.3	124	91	4	448	23	23	28	25	1.99
31213748--31213781	13	2.7	13	95	4	61	14	5	17	61	1.52
31215610--31215751	42	3.3	43	77	5	137	30	16	23	28	1.96
31222596--31222674	25	3.3	25	67	22	78	29	31	10	29	1.90
31222574--31222858	47	6.1	47	92	0	435	27	28	10	32	1.90
31222896--31222954	26	2.3	26	96	0	109	40	25	0	33	1.56
31226109--31226419	40	7.8	40	95	2	547	25	32	23	18	1.97
31226577--31226678	51	2.0	51	98	0	195	38	23	1	36	1.66
31227263--31227352	46	2.0	46	95	0	162	47	16	16	18	1.82
31228083--31228412	47	7.0	47	92	0	525	27	29	11	32	1.91
31228103--31228180	25	3.2	25	65	23	67	29	29	10	30	1.90
31228222--31228297	22	3.3	22	65	28	59	25	30	13	31	1.93
31228450--31228508	26	2.3	26	100	0	118	40	27	0	32	1.56
31242592--31242663	5	13.6	5	81	12	74	18	2	1	77	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31244448--31244508	30	2.0	30	83	0	77	40	8	21	29	1.82
31244967--31245224	68	3.9	64	76	11	229	29	16	29	24	1.97
31265722--31265752	16	1.9	16	93	0	53	25	3	25	45	1.69
31280883--31280968	37	2.3	36	84	7	109	41	24	16	17	1.89
31280943--31281020	41	1.9	41	92	2	131	30	19	24	25	1.98
31293111--31293293	79	2.3	81	84	7	232	25	27	22	24	2.00
31293090--31293293	40	5.1	40	81	8	229	25	27	22	24	1.99
31296180--31296357	39	4.6	39	97	0	338	20	21	28	29	1.98
31297679--31297716	13	2.8	13	96	4	67	26	31	0	42	1.56
31299213--31299267	22	2.5	21	82	8	56	43	0	0	56	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276