genome.fa.s12.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  49  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15246532--15246713	10	18.8	10	67	16	80	64	1	2	31	1.15
15246601--15246718	19	6.2	20	67	14	70	65	0	2	31	1.12
15246546--15246715	59	2.9	57	78	10	143	64	1	1	31	1.14
15246641--15246739	29	3.4	30	78	4	103	61	2	3	33	1.23
15246985--15247041	10	5.9	10	79	4	55	38	0	0	61	0.96
15246919--15247004	38	2.3	37	80	8	93	33	3	2	60	1.26
15246986--15247020	9	3.8	9	92	3	52	34	0	0	65	0.93
15246990--15247079	19	4.7	19	76	12	78	36	1	1	61	1.11
15246982--15247084	29	3.6	28	70	16	77	35	1	0	61	1.14
15247585--15247639	15	3.7	15	78	2	58	36	1	0	61	1.06
15249036--15249084	4	12.2	4	100	0	98	24	0	24	51	1.49
15256462--15256497	16	2.2	17	90	5	56	83	2	2	11	0.86
15258577--15258774	52	3.9	52	87	7	309	34	15	22	27	1.94
15258563--15258785	98	2.3	98	99	0	437	34	14	22	27	1.94
15258629--15258784	46	3.3	46	85	10	231	35	14	21	28	1.92
15258748--15258857	37	3.0	37	89	2	170	35	15	23	25	1.94
15261073--15261116	18	2.4	18	88	3	70	81	4	0	13	0.83
15261088--15261164	27	2.8	27	80	7	84	77	3	5	12	1.07
15261079--15261116	6	6.3	6	96	0	67	84	2	0	13	0.73
15261079--15261162	27	3.1	27	77	16	77	77	3	4	14	1.07
15262914--15262974	31	2.0	30	90	3	95	24	3	13	59	1.49
15265376--15265402	14	1.9	14	100	0	54	59	0	3	37	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15269967--15270120	56	2.8	56	86	4	229	31	9	13	46	1.75
15270233--15270282	12	4.2	12	73	21	52	46	2	2	50	1.24
15279971--15280022	15	3.2	15	73	19	50	44	0	1	53	1.11
15280054--15280095	13	2.9	14	80	13	50	47	0	0	52	1.00
15280062--15280137	33	2.3	34	81	4	93	52	0	0	47	1.00
15280062--15280144	34	2.5	34	75	13	84	50	0	0	49	1.00
15280658--15280731	31	2.4	32	84	4	89	25	12	10	51	1.71
15284342--15284797	232	2.0	224	95	3	822	42	6	14	36	1.72
15286793--15287057	45	5.9	45	93	2	426	40	13	23	22	1.90
15291394--15291451	30	1.9	30	82	0	71	41	6	6	44	1.58
15301924--15301977	22	2.6	20	81	16	65	74	0	1	24	0.92
15303753--15303799	24	2.0	24	83	8	60	57	0	42	0	0.98
15308444--15308483	18	2.2	18	86	8	55	67	12	0	20	1.22
15308566--15308628	30	2.1	30	96	0	117	57	12	3	26	1.51
15308658--15308700	22	2.0	22	85	0	59	58	11	11	18	1.63
15310855--15310905	16	3.2	16	78	10	59	39	3	29	27	1.74
15311103--15311128	6	4.3	6	100	0	52	84	0	0	15	0.62
15313290--15313376	25	3.5	25	79	4	79	28	20	28	21	1.98
15323827--15323858	12	2.5	13	90	10	57	37	15	0	46	1.46
15327435--15327502	31	2.3	28	80	10	73	52	5	0	41	1.25
15327796--15327829	3	11.3	3	100	0	68	67	0	0	32	0.91
15328458--15328497	13	3.1	13	85	7	55	22	30	7	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15330811--15330868	25	2.3	25	90	0	89	27	20	31	20	1.98
15333460--15333484	13	1.9	13	100	0	50	8	16	16	60	1.58
15334973--15335150	39	4.6	39	84	6	177	28	29	21	20	1.98
15334973--15335168	78	2.5	78	82	6	220	28	29	21	20	1.98
15335043--15335168	39	3.2	39	96	0	225	27	30	20	21	1.98
15343417--15343468	22	2.4	22	80	6	70	38	15	23	23	1.92
15348216--15348243	14	2.0	14	100	0	56	28	14	0	57	1.38
15348448--15348487	18	2.2	18	86	8	55	20	0	12	67	1.22
15349187--15349247	23	2.7	22	77	7	59	44	0	1	54	1.10
15349457--15349507	16	3.2	16	85	0	75	31	29	0	39	1.57
15357785--15357836	22	2.4	21	81	12	61	23	1	0	75	0.91
15368788--15368897	52	2.1	52	98	0	211	47	7	4	40	1.52
15368798--15368918	52	2.3	52	90	2	181	47	6	5	39	1.53
15376933--15376961	15	1.9	15	100	0	58	31	13	27	27	1.94
15378424--15378529	56	1.9	56	88	0	158	25	22	24	27	2.00
15382814--15382922	54	2.0	53	96	1	200	4	36	15	42	1.68
15388277--15388328	23	2.3	23	89	0	77	38	1	15	44	1.58
15395464--15395531	16	4.2	16	80	1	73	45	7	20	26	1.77
15395456--15395525	32	2.2	32	92	0	113	44	5	21	28	1.75
15395507--15395600	43	2.1	44	88	7	138	37	4	23	35	1.75
15395696--15395846	58	2.5	61	78	10	166	54	3	0	41	1.24
15395825--15395870	22	2.1	21	88	11	67	65	2	0	32	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15395973--15396007	13	2.8	12	83	8	52	57	0	11	31	1.34
15397478--15397503	13	2.0	13	100	0	52	53	23	23	0	1.46
15406144--15406170	4	6.8	4	100	0	54	51	0	0	48	1.00
15409261--15409306	20	2.2	20	88	3	65	36	2	0	60	1.09
15410819--15410892	26	2.8	26	76	13	73	39	2	1	56	1.22
15410842--15410895	27	2.0	26	85	3	72	40	5	0	53	1.24
15411149--15411202	21	2.6	21	93	0	90	29	33	7	29	1.85
15411202--15411241	21	1.9	21	94	0	71	22	30	2	45	1.66
15417542--15417644	47	2.2	47	92	3	172	35	17	14	32	1.90
15417701--15417738	19	2.0	19	94	0	67	34	13	0	52	1.40
15422954--15422987	17	2.0	17	88	0	50	70	5	23	0	1.09
15422994--15423031	15	2.6	15	91	4	60	63	0	36	0	0.95
15424192--15424235	18	2.4	18	85	7	54	36	9	18	36	1.82
15426210--15426247	20	1.9	20	84	10	51	42	13	23	21	1.88
15428145--15428372	46	5.0	46	86	4	282	38	15	24	21	1.92
15429280--15429314	14	2.4	15	90	4	54	71	2	0	25	1.00
15429310--15429426	30	3.9	29	80	7	119	29	21	3	45	1.68
15430087--15430209	58	2.1	58	82	5	151	28	19	4	47	1.70
15437220--15437321	24	4.3	24	86	2	125	23	19	16	40	1.91
15462998--15463035	21	1.9	20	89	10	60	50	21	2	26	1.62
15467037--15467097	28	2.2	28	88	5	88	32	21	11	34	1.89
15468000--15468089	33	3.1	28	65	26	69	47	0	8	43	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15469427--15469502	33	2.3	33	81	4	82	15	14	7	61	1.54
15473304--15473481	44	4.0	44	100	0	356	38	23	20	18	1.94
15477868--15477906	18	2.3	18	86	8	55	43	12	5	38	1.65
15478063--15478093	15	2.1	15	100	0	62	22	32	6	38	1.80
15481455--15481484	15	2.0	15	93	0	51	23	46	6	23	1.75
15482226--15482264	18	2.3	18	86	8	55	43	12	5	38	1.65
15482421--15482451	15	2.1	15	93	0	53	25	32	3	38	1.72
15488583--15488748	6	26.7	6	76	9	109	60	12	6	21	1.52
15488685--15488762	18	4.3	18	83	0	84	69	8	3	17	1.30
15491537--15491619	23	3.7	22	74	12	80	48	34	1	15	1.53
15491606--15491631	12	2.2	12	100	0	52	57	26	0	15	1.38
15491586--15491653	34	2.0	35	94	2	120	51	32	1	14	1.52
15491539--15491689	80	1.9	80	83	5	198	47	34	3	14	1.61
15491618--15491689	23	3.1	23	82	4	92	47	34	5	12	1.65
15491562--15491677	57	2.0	58	88	1	171	49	33	3	13	1.59
15492737--15492833	25	3.8	26	93	1	153	28	24	21	24	1.99
15492737--15492833	51	1.9	51	89	4	151	28	24	21	24	1.99
15492883--15492957	20	3.8	20	91	6	111	34	18	9	37	1.83
15492883--15492938	11	5.5	11	71	16	57	32	19	10	37	1.86
15492900--15492956	9	5.8	10	76	15	57	35	19	8	36	1.83
15496501--15496552	25	2.1	25	100	0	104	23	17	7	51	1.70
15500937--15501050	50	2.3	50	83	3	140	25	22	19	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15500938--15501054	25	4.7	25	76	12	87	26	22	18	32	1.97
15501203--15501264	31	2.1	30	82	17	76	46	8	16	29	1.75
15503530--15503608	40	2.0	40	87	5	115	26	15	22	35	1.94
15504766--15504810	23	1.9	24	86	4	65	22	22	11	44	1.84
15504887--15505134	55	4.7	54	79	8	235	22	24	17	35	1.95
15510770--15510809	19	2.0	20	90	4	64	15	22	10	52	1.71
15511247--15511317	34	2.2	31	79	15	90	8	28	11	47	1.68
15512544--15512576	17	1.9	17	100	0	66	39	18	18	24	1.92
15536634--15537095	252	1.8	251	87	1	683	39	17	12	30	1.87
15537363--15537414	22	2.3	22	86	3	68	59	5	5	28	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276