genome.fa.s12.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  140  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45610463--45610535	34	2.1	34	82	5	85	30	20	24	24	1.99
45616682--45616733	6	8.3	6	79	8	59	75	1	3	19	1.06
45616684--45616733	26	1.9	26	88	8	75	76	2	4	18	1.04
45616677--45616731	20	2.8	19	84	10	67	74	3	5	16	1.15
45616843--45616886	23	1.9	23	85	0	61	29	25	18	27	1.98
45623976--45624051	37	2.1	37	84	0	98	31	5	14	48	1.66
45624374--45624417	22	2.0	22	87	12	65	27	2	11	59	1.44
45625881--45625906	9	2.9	9	100	0	52	65	23	0	11	1.25
45634176--45634349	46	3.7	47	80	6	185	30	17	29	22	1.97
45641720--45641890	47	3.7	44	75	14	139	27	18	29	23	1.98
45641717--45641899	94	2.0	93	85	1	249	27	19	29	24	1.98
45641761--45641939	47	3.8	47	79	9	195	27	20	29	21	1.98
45641765--45641937	94	1.8	95	85	8	246	27	20	29	22	1.98
45642994--45643018	13	1.9	13	100	0	50	20	8	56	16	1.65
45651015--45651058	20	2.2	20	91	0	70	56	11	25	6	1.58
45656006--45656047	22	1.9	22	85	0	57	14	16	4	64	1.45
45666453--45666544	28	3.1	28	73	14	85	28	25	20	26	1.99
45666453--45666517	33	2.0	33	90	0	103	26	24	20	29	1.99
45666678--45666749	27	2.7	27	85	6	94	34	22	20	22	1.97
45666800--45666846	23	2.0	23	95	0	85	46	17	10	25	1.79
45666913--45667110	27	7.3	27	81	1	227	23	21	20	34	1.96
45666913--45667110	54	3.7	54	85	2	254	23	21	20	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45669910--45669948	7	5.4	7	90	6	60	15	2	0	82	0.79
45669903--45669948	22	2.2	20	84	7	56	15	4	0	80	0.86
45677070--45677527	40	11.5	40	91	2	656	22	22	27	26	1.99
45690336--45690536	40	5.1	40	87	6	275	23	23	27	24	2.00
45694087--45694216	40	3.3	40	85	3	138	26	26	21	25	1.99
45694115--45694271	79	2.0	80	82	6	194	24	26	23	24	2.00
45694115--45694271	40	4.0	40	81	9	160	24	26	23	24	2.00
45712210--45712317	43	2.5	43	89	0	162	36	23	13	26	1.92
45713749--45713774	13	2.0	13	100	0	52	38	15	0	46	1.46
45714707--45714750	5	8.8	5	85	9	63	0	20	0	79	0.73
45719789--45719968	46	3.9	46	78	13	181	23	28	18	29	1.98
45719748--45719962	94	2.3	94	83	4	256	23	26	19	30	1.98
45719748--45719962	46	4.6	46	75	11	168	23	26	19	30	1.98
45721552--45721626	27	2.8	27	79	4	80	38	20	24	17	1.93
45726612--45726734	40	3.1	40	89	3	178	25	26	22	25	2.00
45726931--45727059	40	3.2	40	91	6	222	27	27	22	23	1.99
45732555--45732652	28	3.5	28	95	1	171	26	12	28	32	1.92
45732555--45732665	28	4.0	27	90	3	116	28	11	26	33	1.91
45738080--45738350	46	5.8	46	72	8	167	22	29	21	26	1.99
45747672--45747749	41	1.9	41	97	0	147	41	19	12	26	1.87
45747898--45747956	23	2.4	25	78	16	70	42	15	0	42	1.46
45748643--45748689	4	12.8	4	78	17	57	0	21	0	78	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45748643--45748707	24	2.6	24	85	4	76	0	18	1	80	0.80
45748647--45748693	15	3.2	15	84	6	60	0	19	0	80	0.70
45748647--45748692	7	6.4	7	92	5	65	0	19	0	80	0.71
45748768--45748865	38	2.7	36	71	20	89	46	3	1	48	1.24
45748818--45748877	29	2.1	28	81	9	68	43	5	0	51	1.23
45755546--45755604	23	2.4	25	75	16	61	40	13	3	42	1.61
45756292--45756375	4	21.0	4	70	18	59	4	21	1	72	1.10
45756288--45756323	16	2.2	17	90	5	56	5	19	0	75	1.00
45756312--45756361	26	2.0	25	84	4	64	4	24	2	70	1.15
45756378--45756436	25	2.3	26	78	18	61	30	6	1	61	1.32
45756453--45756513	29	2.1	28	82	8	70	42	4	0	52	1.23
45761720--45761749	14	2.1	15	93	6	53	63	13	10	13	1.52
45761706--45761936	115	2.0	115	97	0	435	45	16	9	29	1.77
45762223--45762247	13	1.9	13	100	0	50	20	40	24	16	1.91
45772567--45772653	43	2.0	43	100	0	174	33	13	18	34	1.90
45779089--45779407	47	6.8	48	73	17	228	27	18	29	24	1.98
45779138--45779355	92	2.3	96	81	10	245	27	18	29	24	1.98
45780567--45780606	21	2.0	21	85	5	55	15	40	25	20	1.90
45786470--45786610	46	3.0	46	91	2	210	29	23	8	39	1.84
45791996--45792028	17	1.9	17	93	0	57	81	12	6	0	0.85
45792993--45793063	28	2.6	27	82	6	88	70	1	1	26	1.04
45795790--45795897	27	4.0	27	75	17	91	63	0	1	33	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45795835--45795921	17	4.9	18	75	9	63	66	2	3	27	1.20
45795848--45795884	16	2.3	16	85	0	56	67	2	5	24	1.25
45795808--45795921	53	2.2	53	82	6	142	66	1	2	28	1.15
45796180--45796241	27	2.3	25	78	13	70	41	1	1	54	1.19
45796176--45796269	46	2.0	46	80	11	104	37	3	2	57	1.27
45796701--45796761	31	2.0	31	96	0	113	44	4	14	36	1.67
45797383--45797423	17	2.4	17	100	0	82	24	31	34	9	1.88
45798512--45798554	12	3.4	12	87	6	50	23	4	0	72	1.04
45801370--45801408	18	2.1	18	85	9	51	66	2	5	25	1.25
45801920--45801979	10	6.3	9	75	17	59	0	1	13	85	0.69
45801967--45802006	21	2.0	20	95	5	71	15	0	5	80	0.88
45801915--45801979	6	10.7	6	88	8	80	0	1	13	84	0.69
45801915--45801979	7	9.4	7	86	9	82	0	1	13	84	0.69
45805368--45805415	17	2.8	18	75	9	55	41	2	2	54	1.24
45806616--45806666	18	2.7	18	88	8	75	50	0	25	23	1.49
45807131--45807184	24	2.2	24	83	6	65	18	5	27	48	1.70
45814876--45815941	40	26.6	40	96	0	1856	25	27	21	24	2.00
45817147--45817225	37	2.1	37	83	4	97	26	27	18	26	1.98
45817344--45818521	49	24.3	49	97	0	2173	30	29	8	32	1.86
45832906--45833062	49	3.2	46	76	12	147	21	28	22	27	1.99
45838983--45839013	16	1.9	16	93	0	53	48	0	0	51	1.00
45839110--45839155	22	2.1	21	84	4	56	43	2	8	45	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45839666--45839705	17	2.2	18	86	8	55	62	0	5	32	1.17
45839896--45839953	18	3.2	18	75	20	50	67	0	0	32	0.91
45863266--45863401	67	2.0	68	81	4	159	40	19	19	21	1.92
45867907--45868019	57	2.0	57	91	3	185	47	6	32	13	1.67
45875623--45875883	3	86.0	3	67	23	88	60	1	3	34	1.22
45875642--45875684	19	2.3	19	92	4	70	65	2	4	27	1.25
45875651--45875874	19	11.9	19	67	23	84	60	1	3	34	1.21
45875671--45875876	13	14.6	14	68	25	82	60	0	2	35	1.18
45875651--45875883	50	4.5	47	67	24	125	61	1	3	34	1.19
45875691--45875869	16	10.8	18	72	22	69	60	1	3	35	1.21
45875635--45875780	76	2.0	73	82	9	179	60	1	4	34	1.24
45877529--45878027	205	2.4	206	86	1	678	29	20	18	31	1.96
45886080--45886129	15	3.5	15	82	15	61	42	10	24	24	1.85
45888402--45888436	15	2.2	16	95	5	63	20	8	25	45	1.79
45890074--45891011	40	23.5	40	98	0	1740	26	27	22	22	1.99
45898582--45898636	19	2.8	19	76	10	58	40	20	5	34	1.75
45898839--45898907	24	2.8	25	86	6	95	31	20	23	24	1.98
45901675--45901711	16	2.3	16	85	0	56	48	21	21	8	1.76
45901922--45902017	29	3.3	29	88	0	147	28	14	27	30	1.95
45906798--45906893	42	2.3	43	81	5	115	28	17	22	31	1.97
45906740--45906892	43	3.6	42	73	11	123	24	17	23	33	1.96
45906823--45906911	43	2.1	42	81	10	101	24	17	24	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45909248--45909286	18	2.1	19	85	4	53	10	28	38	23	1.87
45917322--45917353	14	2.4	13	90	10	55	62	12	6	18	1.50
45934348--45934477	43	3.1	42	79	8	138	26	26	16	30	1.96
45934348--45934477	42	3.1	42	81	6	147	26	26	16	30	1.96
45943634--45943712	39	2.0	39	97	0	149	37	5	17	39	1.72
45948170--45948239	34	2.1	34	100	0	140	32	18	14	34	1.91
45949927--45950043	42	2.7	42	79	7	121	24	21	25	28	1.99
45955580--45955614	5	6.8	5	90	3	52	2	37	0	60	1.12
45965450--45965484	17	2.0	18	88	5	54	14	5	20	60	1.54
45968328--45968373	24	2.0	24	82	4	58	36	13	4	45	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276