genome.fa.s12.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  113  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35846131--35846221	42	2.2	42	87	0	128	50	13	6	29	1.66
35846243--35846282	19	2.2	18	95	4	71	42	15	2	40	1.60
35849971--35850042	36	2.0	36	97	0	135	27	6	8	56	1.54
35850915--35851167	135	1.9	135	90	3	402	36	13	18	30	1.90
35852335--35852439	26	4.0	26	91	0	174	32	6	23	37	1.81
35854041--35854181	27	5.2	27	85	10	182	19	24	21	34	1.97
35854039--35854181	54	2.6	54	91	4	218	18	25	21	34	1.96
35854060--35854199	27	5.2	27	74	22	100	20	25	20	35	1.96
35859111--35859192	26	3.2	26	92	0	137	29	4	26	39	1.77
35860296--35860399	27	3.9	27	86	9	133	19	25	21	34	1.96
35861570--35861636	32	2.1	31	84	13	84	31	11	26	29	1.92
35867617--35867656	12	3.2	12	79	6	53	35	10	32	22	1.87
35867607--35867656	25	2.0	25	100	0	100	36	8	32	24	1.84
35868396--35868437	5	8.6	5	80	15	52	19	0	2	78	0.86
35868396--35868441	15	3.1	15	84	15	60	19	0	4	76	0.96
35870614--35870751	48	2.9	48	87	2	188	27	18	26	27	1.98
35875124--35875168	20	2.4	19	86	13	67	22	4	6	66	1.33
35877251--35877284	18	1.9	18	88	5	52	20	29	35	14	1.93
35882210--35882361	80	1.9	79	86	6	218	23	23	27	26	2.00
35882177--35882325	40	3.7	40	85	5	203	24	20	26	28	1.99
35882177--35882377	40	5.1	40	83	4	133	24	21	26	27	1.99
35889297--35889374	40	2.0	40	89	0	120	38	14	7	39	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35900455--35900501	24	2.0	24	86	0	67	44	14	12	27	1.82
35900965--35901076	34	3.3	34	87	1	136	12	35	21	30	1.90
35904984--35905040	28	2.0	28	96	0	105	22	28	22	26	1.99
35911387--35911440	27	2.3	22	77	22	56	33	9	25	31	1.88
35911393--35911451	27	2.1	28	96	3	111	35	10	22	32	1.87
35914518--35914831	46	6.7	47	78	11	238	28	18	30	22	1.97
35918543--35918586	14	2.9	15	86	6	54	11	15	15	56	1.66
35921718--35921984	46	5.7	47	75	11	219	28	18	29	23	1.98
35925533--35925570	18	2.1	18	100	0	76	21	26	21	31	1.98
35929108--35929133	13	2.0	13	100	0	52	46	7	0	46	1.31
35933301--35933495	50	3.9	50	77	5	187	40	17	10	31	1.84
35933304--35933496	100	1.9	100	85	2	262	40	17	10	31	1.84
35954107--35954179	36	2.0	36	97	0	137	31	17	15	35	1.91
35962134--35962369	85	2.8	84	83	3	292	33	19	14	33	1.92
35967172--35967201	16	1.9	15	93	6	51	30	3	13	53	1.56
35969477--35969536	28	2.2	27	82	8	68	71	3	10	15	1.25
35970206--35970231	7	3.7	7	100	0	52	61	0	11	26	1.30
35970447--35970514	25	2.8	25	90	2	111	27	5	22	44	1.76
35971169--35971285	43	2.7	42	85	10	173	24	19	28	27	1.99
35974355--35974403	16	3.2	15	77	13	55	38	0	10	51	1.36
35977565--35977589	10	2.5	10	100	0	50	16	0	0	84	0.63
35978716--35978746	13	2.4	13	94	0	53	80	0	0	19	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35981097--35981147	25	2.1	24	88	3	75	15	23	17	41	1.88
35982440--35982499	30	2.0	30	83	6	77	38	6	26	28	1.81
35990131--35990521	65	6.0	65	99	0	764	33	13	12	40	1.82
35991656--35991733	13	6.4	11	76	19	66	2	16	0	80	0.82
35991662--35991751	8	10.8	8	68	21	51	4	16	0	78	0.90
35991657--35991733	25	3.2	23	76	21	77	2	16	0	80	0.82
35991656--35991728	27	2.6	28	75	16	78	2	16	0	80	0.82
35991662--35991751	37	2.4	38	80	10	112	4	16	0	78	0.90
35991656--35991733	31	2.5	30	77	20	81	2	16	0	80	0.82
35991670--35991741	25	2.9	24	76	17	76	4	16	0	79	0.89
35994555--35994615	30	2.0	30	93	0	104	21	37	29	11	1.88
35998816--35998868	26	2.0	26	96	0	97	15	28	35	20	1.93
35999351--35999453	40	2.7	38	75	14	120	15	16	34	33	1.90
36009574--36009628	15	3.4	16	73	19	51	50	0	5	43	1.25
36009574--36009641	31	2.1	33	84	10	88	51	0	5	42	1.26
36014325--36014496	88	2.0	88	95	0	308	45	19	5	29	1.72
36016205--36016336	52	2.6	51	82	2	149	25	15	26	33	1.95
36018467--36018630	78	2.1	77	80	7	172	28	26	20	25	1.99
36018505--36018630	39	3.2	39	85	2	164	29	26	18	25	1.98
36020534--36020839	49	6.3	49	92	3	489	29	29	8	33	1.87
36020523--36020839	96	3.3	96	90	4	503	28	29	8	33	1.87
36020523--36020839	145	2.2	143	89	5	485	28	29	8	33	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36022288--36022463	56	3.1	56	99	0	343	22	22	9	45	1.80
36036895--36036951	18	3.2	17	79	18	62	66	3	0	29	1.08
36037703--36037763	27	2.3	25	81	10	68	29	0	4	65	1.13
36037719--36037761	18	2.4	19	80	11	54	27	0	6	65	1.18
36037747--36037780	7	4.9	7	88	0	50	29	2	0	67	1.05
36039866--36039908	21	2.0	21	95	0	77	27	0	37	34	1.57
36039889--36039921	16	2.1	16	94	0	57	33	0	36	30	1.58
36039900--36039994	45	2.1	44	88	1	136	34	5	27	32	1.79
36040156--36040190	18	2.0	17	88	5	52	54	0	0	45	0.99
36040114--36040186	27	2.7	27	76	8	76	52	2	0	45	1.15
36041341--36041375	18	2.0	17	88	5	52	60	0	0	40	0.97
36041416--36041462	17	2.9	16	78	18	53	46	2	6	44	1.40
36041435--36041468	17	2.0	17	94	0	59	50	0	5	44	1.26
36041501--36041695	93	2.1	92	88	4	286	47	4	4	44	1.41
36049659--36049742	42	2.0	42	100	0	168	35	21	21	21	1.96
36050430--36050474	20	2.2	20	88	0	63	35	13	2	48	1.54
36052999--36053057	31	1.9	31	92	0	100	40	18	15	25	1.90
36053001--36053072	31	2.3	31	85	4	92	44	16	13	25	1.85
36053510--36053539	13	2.4	13	94	5	53	30	0	6	63	1.20
36057826--36057908	34	2.5	32	80	14	89	42	16	13	27	1.86
36061973--36062050	40	2.0	40	84	5	104	17	14	30	37	1.90
36069971--36070034	27	2.4	27	89	2	94	39	4	6	50	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36070108--36070186	34	2.4	33	83	10	99	46	6	17	29	1.73
36074394--36074550	78	2.0	78	96	0	287	52	7	14	26	1.66
36074393--36074520	37	3.4	35	67	20	87	52	6	14	27	1.65
36076062--36076200	54	2.5	57	85	10	171	25	18	25	30	1.98
36076780--36076824	23	2.0	23	82	8	56	37	8	13	40	1.76
36077927--36077986	24	2.3	28	75	21	67	58	5	1	35	1.30
36078651--36078706	17	3.2	17	85	10	60	39	1	0	58	1.08
36078655--36078706	19	2.8	19	82	11	63	38	1	0	59	1.08
36087141--36087225	44	1.9	44	97	0	161	37	16	2	43	1.61
36089482--36089538	15	3.9	15	88	2	89	35	0	12	52	1.39
36089922--36090017	21	4.5	21	84	2	111	15	21	27	35	1.94
36089909--36090017	42	2.5	42	82	2	119	17	22	25	34	1.95
36094296--36094332	18	2.1	18	100	0	74	27	5	5	62	1.39
36097767--36097804	17	2.1	19	90	9	62	60	2	0	36	1.11
36108985--36109070	45	1.9	45	85	4	120	44	10	20	24	1.83
36111981--36112118	39	3.5	39	90	0	213	46	20	3	29	1.67
36114873--36114928	26	2.2	26	96	0	103	30	7	25	37	1.82
36116551--36116691	27	5.2	26	84	6	183	17	23	24	35	1.95
36116551--36116691	54	2.6	53	93	2	228	17	23	24	35	1.95
36121954--36122061	26	4.2	26	89	0	171	32	5	24	37	1.78
36123660--36123800	54	2.6	54	90	2	221	17	24	22	36	1.95
36123660--36123800	27	5.2	27	83	6	171	17	24	22	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36132016--36132284	47	5.7	46	74	11	183	20	30	21	27	1.98
36132014--36132284	94	2.9	92	76	9	273	20	29	21	28	1.98
36135943--36136093	42	3.5	43	79	7	146	30	25	17	26	1.98
36139893--36139954	31	2.0	31	96	0	115	35	30	8	25	1.85
36142842--36142967	42	3.0	43	75	9	125	30	24	19	26	1.98
36145874--36146021	43	3.4	43	72	13	126	26	17	25	31	1.97
36153533--36153657	46	2.7	46	83	5	153	27	19	32	20	1.97
36153537--36153708	46	3.7	44	77	7	130	25	18	30	25	1.98
36161233--36161541	46	6.7	46	80	13	325	26	18	30	24	1.98
36163824--36164024	108	1.8	110	84	6	275	34	17	25	22	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276