genome.fa.s12.2.7.7.80.10.50.1000.129.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  91551117

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   

This is table  129  of  276  ( 33102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41690212--41690260	24	2.0	24	100	0	98	44	0	8	46	1.33
41690405--41690454	21	2.2	23	82	10	59	38	6	16	40	1.73
41690954--41691008	23	2.4	23	84	6	76	25	21	20	32	1.97
41691879--41691947	22	3.1	22	77	8	77	20	23	15	40	1.91
41692826--41692941	60	1.9	59	91	0	178	35	11	11	41	1.76
41698729--41699097	47	7.7	46	76	16	224	27	18	30	22	1.98
41698816--41698920	55	1.9	55	96	0	192	29	17	31	21	1.96
41698766--41698954	101	1.9	103	86	4	276	29	19	30	21	1.97
41698880--41698999	46	2.6	44	85	10	145	25	19	30	25	1.98
41702335--41702364	15	2.0	15	100	0	60	40	20	13	26	1.89
41711144--41711203	27	2.3	27	79	2	68	21	21	20	36	1.95
41720713--41720750	19	2.0	20	85	15	53	39	23	0	36	1.55
41720980--41721150	93	1.8	93	92	0	288	29	28	21	21	1.98
41720975--41721147	46	3.7	46	78	10	199	30	27	20	21	1.98
41721570--41721629	30	2.0	30	86	0	84	33	25	5	36	1.78
41725325--41725613	48	6.0	48	78	1	290	27	18	28	25	1.98
41725326--41725603	96	2.9	96	88	3	407	28	17	28	25	1.98
41726650--41726704	28	1.9	28	85	10	76	18	23	41	16	1.89
41727471--41727521	21	2.4	22	90	3	77	15	29	35	19	1.93
41727486--41727541	21	2.7	21	86	5	69	17	30	33	17	1.94
41731291--41731466	46	3.8	46	78	11	198	21	17	30	30	1.96
41731290--41731458	93	1.8	93	90	2	277	21	17	30	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41746372--41746399	13	2.2	13	100	0	56	32	7	14	46	1.71
41747233--41747309	24	3.2	24	78	9	75	19	31	2	46	1.63
41749511--41749548	15	2.4	16	82	8	51	57	18	5	18	1.58
41752102--41752132	16	1.9	16	100	0	62	38	25	22	12	1.90
41772645--41772781	47	2.9	47	92	0	229	33	9	28	28	1.88
41772879--41773164	47	6.1	47	91	1	396	32	9	31	27	1.88
41773283--41773360	37	2.1	36	85	2	102	24	17	30	26	1.97
41779361--41779597	50	4.8	49	79	2	269	26	18	25	29	1.98
41784597--41784840	50	4.9	49	76	3	206	27	18	25	28	1.98
41787376--41787402	13	2.1	13	100	0	54	14	37	33	14	1.88
41797387--41797446	32	1.9	32	86	3	86	20	13	6	60	1.55
41813565--41813695	40	3.3	40	87	0	181	22	15	24	38	1.92
41814802--41814933	33	4.2	33	75	9	121	29	22	19	28	1.98
41815279--41815420	74	1.9	74	85	1	194	23	22	19	34	1.96
41815252--41815444	27	7.4	27	74	10	168	25	21	18	34	1.96
41819715--41819745	4	7.8	4	100	0	62	25	0	22	51	1.48
41832182--41832248	29	2.3	29	84	0	89	26	29	17	25	1.98
41837627--41837789	40	4.1	40	83	3	193	23	21	27	27	1.99
41837627--41837803	80	2.2	80	85	5	234	24	22	26	26	2.00
41838031--41838072	22	1.9	22	85	9	59	33	9	14	42	1.78
41845546--41845634	29	3.1	29	75	16	94	30	32	10	26	1.89
41845886--41845932	16	3.0	16	81	3	60	6	19	25	48	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41845889--41845927	8	4.9	8	80	0	51	7	20	25	46	1.77
41851305--41851330	13	2.0	13	100	0	52	7	38	38	15	1.76
41852807--41852838	13	2.3	15	89	10	50	40	9	31	18	1.83
41864405--41864518	40	2.8	40	85	0	147	25	16	24	33	1.96
41864499--41864558	28	2.1	28	84	0	75	23	13	33	30	1.93
41873877--41874821	40	23.6	40	96	1	1682	27	27	20	25	1.99
41875952--41876071	56	2.1	56	98	0	231	22	23	9	45	1.81
41880368--41880713	40	8.7	40	91	3	520	26	27	21	25	1.99
41904245--41904342	49	2.0	49	95	0	178	40	20	17	21	1.91
41904387--41904441	20	2.8	20	88	0	83	40	23	18	18	1.91
41906369--41906402	17	2.0	17	94	0	59	55	0	5	38	1.24
41907579--41907661	24	3.5	24	81	0	94	24	10	30	34	1.89
41908305--41908456	39	3.9	39	88	1	205	19	23	28	28	1.98
41912419--41912503	43	2.0	43	84	9	111	23	16	30	29	1.96
41918325--41918373	15	3.1	15	83	11	62	53	18	14	14	1.74
41925210--41925376	45	3.7	45	90	0	253	22	15	25	35	1.94
41925210--41925396	45	4.2	45	89	0	248	24	14	24	36	1.93
41927157--41927255	27	3.7	27	80	8	87	43	20	7	29	1.78
41927334--41927423	27	3.3	26	70	14	67	37	20	18	23	1.94
41928239--41928308	25	2.8	24	91	4	104	24	28	24	22	1.99
41928238--41928321	25	3.4	24	83	8	98	27	25	23	23	2.00
41928456--41928547	42	2.2	42	88	0	130	30	13	20	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41937251--41937378	63	2.0	63	98	0	247	39	10	3	46	1.53
41937502--41937539	18	2.1	18	85	9	51	36	5	0	57	1.21
41938874--41938898	3	8.3	3	100	0	50	0	0	64	36	0.94
41940270--41940317	25	1.9	25	100	0	96	39	4	12	43	1.62
41940434--41940459	13	2.0	13	100	0	52	38	23	7	30	1.83
41942661--41942691	16	1.9	16	93	0	53	41	3	0	54	1.16
41942659--41942727	27	2.5	27	73	15	70	42	2	1	53	1.24
41946072--41946097	13	2.0	13	100	0	52	46	7	15	30	1.74
41960182--41960265	42	2.0	42	97	0	159	34	19	11	34	1.88
41966040--41967147	27	40.6	27	84	3	1313	40	18	8	32	1.81
41966040--41967068	108	9.4	108	92	3	1639	40	18	8	32	1.80
41967182--41967402	80	2.7	79	85	3	199	37	18	20	23	1.94
41967194--41967418	107	2.1	108	88	0	344	36	18	20	24	1.95
41967186--41967406	27	8.2	26	86	4	271	36	18	20	23	1.95
41967194--41967433	27	9.0	25	76	15	112	36	17	20	24	1.94
41967194--41967433	54	4.5	51	79	12	182	36	17	20	24	1.94
41967848--41967963	6	18.8	6	73	15	76	19	16	12	51	1.75
41967851--41967915	25	2.6	25	92	0	103	20	20	13	46	1.84
41967848--41967957	31	3.5	31	74	14	100	19	16	12	51	1.75
41967876--41967945	19	3.7	19	75	11	72	18	15	12	52	1.74
41967870--41967963	37	2.5	37	80	0	107	20	15	11	52	1.74
41969937--41970391	54	8.4	54	82	2	466	40	19	8	32	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41970070--41970491	136	3.1	136	86	3	530	39	18	9	32	1.83
41969944--41970491	27	20.3	27	78	4	390	39	18	8	32	1.82
41970292--41970435	55	2.6	54	77	11	159	39	17	9	33	1.82
41970345--41970528	81	2.3	82	80	5	196	37	19	9	33	1.84
41970181--41970530	136	2.6	136	88	1	427	38	18	10	33	1.84
41970520--41970761	27	9.0	27	83	5	249	36	17	19	25	1.94
41970510--41970761	107	2.3	108	86	0	344	37	17	19	25	1.93
41970512--41970758	81	3.1	81	85	4	329	36	17	19	26	1.94
41970512--41970761	54	4.6	54	82	2	288	36	17	19	26	1.94
41971175--41971417	6	39.3	6	70	19	162	18	17	14	48	1.81
41971178--41971260	25	3.3	25	91	0	130	19	18	14	48	1.81
41971266--41971354	25	3.6	25	92	3	144	19	17	15	47	1.83
41971203--41971322	62	1.9	62	91	0	195	19	18	15	47	1.83
41971177--41971391	87	2.5	87	93	1	351	18	18	15	47	1.82
41973500--41973546	20	2.3	20	96	0	85	14	31	31	21	1.94
41975087--41975157	33	2.2	33	100	0	142	29	23	9	36	1.87
41977389--41977551	48	3.5	47	73	9	156	29	27	17	25	1.98
41977394--41977571	90	2.0	89	82	4	214	30	26	16	26	1.97
41979684--41979762	37	2.1	37	88	0	113	25	30	18	25	1.98
41979880--41980220	47	7.2	47	91	2	520	29	31	8	31	1.86
41984127--41984245	27	4.4	27	85	6	161	42	15	13	28	1.85
41984127--41984245	53	2.2	54	83	7	161	42	15	13	28	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41987877--41988052	27	6.6	27	86	1	237	43	18	14	24	1.87
41987877--41988052	80	2.2	81	87	3	248	43	18	14	24	1.87
41990217--41990357	27	5.2	27	78	0	111	24	22	14	38	1.91
41993726--41993869	39	3.7	38	76	12	123	29	18	22	30	1.97
42001405--42001540	39	3.5	39	78	10	161	27	19	23	29	1.98
42016841--42016959	48	2.5	48	91	0	193	31	26	5	36	1.78
42023612--42023644	15	2.1	17	88	11	52	72	3	15	9	1.21
42028830--42029066	23	10.3	23	85	3	239	29	24	21	23	1.99
42028830--42029064	69	3.4	69	83	5	296	29	24	21	23	1.99
42033590--42033813	40	5.6	40	89	6	328	25	27	23	23	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276